No description available.

Le système de correction des mésappariements (MMR) des eucaryotes est responsable de la correction des erreurs de réplication de l'ADN et intervient dans la recombinaison méiotique. AtPMS1, un gène du MMR chez Arabidopsis thaliana, est impliqué dans la correction des mésappariements, mais son rôle méiotique n’a pas encore été déterminé. Nous avons caractérisé deux lignées mutantes pour le gène AtPMS1. Une lignée présente une morphologie florale aberrante qui est probablement indépendante de l’inactivation d’AtPMS1 mais serait plutôt attribuable à un phénomène de cosuppression. La seconde lignée présente plusieurs phénotypes vraisemblablement causés par l'inactivation d’AtPMS1 : une baisse de fécondité de 65 à 80 %, une ségrégation biaisée de l'allèle mutant et des anomalies cytogénétiques chez 16 % des microsporocytes (fragmentation et ségrégation anormale des chromosomes). Le biais de ségrégation n’a encore jamais été observé chez les autres eucaryotes et semble particulier aux homologues de MutL chez A. thaliana ou chez les plantes. / The eukaryotic DNA mismatch repair system (MMR) is responsible for the repair of replication errors, and plays a role in genetic recombination. AtPMS1, a MMR gene from Arabidopsis thaliana, has already been shown to play a role in DNA repair but its involvement in meiosis has yet to be examined. We characterised two lines of insertional mutants at AtPMS1. A first mutant line has abnormal flowers, which is probably a phenotype unrelated to the loss of AtPMS1 activity but rather caused by cosuppression. The second mutant line shows many phenotypes, likely linked to AtPMS1 inactivation: a 65 to 80% reduction in seed production, an abnormal segregation of the mutant allele and cytogenetic abnormalities in 16% of the microsporocytes (chromosome fragmentation and missegregation). The observed bias in segregation as not been observed in other eukaryotes, and seems to be a particularity of MutL homologues in Arabidopsis or plants as a whole.

Lead (Pb) is one of the most commonly occurring, highly persistent and widely distributed heavy metal contaminants in the environment. It has a tendency to bioaccumulate in animals and plants, and potentially, it is able to enter the human food chain where it poses a hazard to public health. Generally, conventional remediation technologies applied to decontaminate heavy metals from groundwater and soils are very costly. Hence, phytoremediation has emerged as an ecologically friendly and economically attractive technology that uses green plants to clean up heavy metal contaminated sites. However, a lack of knowledge of the biological processes associated with plant responses to Pb (e.g. Pb uptake, accumulation, translocation, and tolerance) has been a bottleneck for the application of Pb phytoremediation in the field. A model genetic system of higher plants, Arabidopsis thaliana, was selected to further examine the physiological, biochemical and molecular events occuring in plants under Pb stress. The overall aim of this project was to obtain a better understanding of plant responses to Pb contaminants in the early developmental stages of A. thaliana seedlings. This research encompassed the physiological responses of A. thaliana seedlings to Pb exposure, monitoring their antioxidative defence systems, and investigating the participation of annexin 1 in the response to Pb-mediated oxidative stress. This research also assessed the protective effect of nitric oxide on Pb-induced toxicity of A. thaliana seedlings and it isolated a putative Pb tolerant mutant from an EMS-mutagenized M2 population. A multiexperimental approach was adopted to achieve these objectives. A. thaliana seedlings were grown on modified Huang & Cunningham (1996) nutrient solution containing 0.8% (w/v) agar, with and without Pb(NO3)2, under controlled conditions. A. thaliana seedlings were insensitive to Pb during seed germination. In treatments with up to 200 μM Pb(NO₃)₂, morphological changes and inhibition of root growth were observed in the 7-d-old seedlings. A tolerance index revealed that Pb(NO₃)₂ concentration of 75 μM and higher brought about more than 50% root growth inhibition. Pb was predominantly retained in the roots. Analysis using a graphite furnace atomic absorption spectroscopy indicated that the level of Pb accumulation in A. thaliana roots was greatly dependent on the Pb(NO₃)₂ concentrations, but only a small fraction of the accumulated Pb was translocated to the shoots (18 - 43%). Transmission electron microscopy analysis showed that Pb was mainly immobilized in the cell walls and intercellular spaces. This was interpreted as a mechanism that minimizes the entry of Pb into cells and interference with cellular functions. Pb that gained entry into the cytoplasm was sequestered into the vacuoles. The toxicity of Pb in the cytosol of A. thaliana seedlings was studied by measuring the H₂O₂ and lipid hydroperoxide levels using a microplate reader. When the Pb(NO₃)₂ concentration in the growth medium was 100 μM, the 7-d-old seedlings contained 2.2-fold higher H₂O₂ and 9.6-fold higher lipid hydroperoxide than the control without Pb(NO₃)₂. This was followed by an up-regulation of the activity of antioxidative enzymes, including superoxide dismutase (SOD), catalase (CAT), glutathione reductase (GR), glutathione peroxidase (GPX), and general peroxidase (POD) by 2.1-, 3.2-, 2.3-, 1.8- and 4.6-fold, respectively, compared with the control. Pb toxicity is known to trigger oxidative stress, but A. thaliana seedlings appeared to be capable of activating cell rescue, defending themselves against harmful oxidative stress and also acclimating to Pb. Data from physiological and biochemical analysis indicate that a combination of avoidance and tolerance mechanisms exists in Pb-treated A. thaliana seedlings to maintain the essential cellular metabolism for survival. Real-time reverse-transcription polymerase chain reaction was used to show the involvement of AnnAt1 in the response of 7-d-old A. thaliana seedlings to a high threshold concentration of Pb. When the seedlings were treated with 100 μM Pb(NO₃)₂, AnnAt1 message levels were up-regulated by 2.12-fold. Pb-mediated oxidative stress may be a component of AnnAt1 gene expression. AnnAt1 potentially could be invoked to reduce the toxic effects of Pb stress by acting as ROS and/or Ca²⁺ signals, as a membrane protector, in detoxification of excessive ROS, or in sequestration of Pb. Pb stress symptoms were less evident in seedlings pre-treated with 1 mM sodium nitroprusside (SNP), a nitric oxide (NO) donor. The present study found that exogenous NO did not alter Pb transport into the plants or efflux pumping of Pb at the plasma membrane. However, NO conferred protection to 7-d-old A. thaliana seedlings primarily by acting as an antioxidant or a signal for actions to scavenge excessive ROS level. The application of exogenous NO before subjecting to 100 μM Pb(NO₃)₂ decreased H₂O₂ back to its original level, and reduced 50% lipid hydroperoxide in the Pb-treated seedlings. As a result, the antioxidative enzyme activities in Pb-exposed seedlings pre-treated with SNP were 23 - 45% lower than those without SNP pre-treatment. Less antioxidative enzyme activities were probably needed to counteract the reduced amount of Pb-induced ROS in A. thaliana seedlings. A post-germination procedure involving prolonged exposure to 150 μM Pb(NO₃)₂ was developed to screen an EMS-mutagenized M2 population of A. thaliana. Potential Pb tolerant mutants were selected based on the ability to grow with their roots penetrating into the medium and maintain purple-green leaves without wilting. A minority of the survivors appeared to go into a resting stage and they seemed to have altered transporters that prevented Pb from entering the cells. Only one putative Pb mutant (M3-1) was recovered from the rescue and set seeds. The M₄ generation of this putative Pb mutant was re-screened for phenotypic confirmation and to determine the regulation of AnnAt1. The 7-d-old putative Pb mutant seemed to display enhanced root and shoot growth in the presence of 150 μM Pb(NO₃)₂ compared to the wild-type seedlings. The transcript level of AnnAt1 in this putative Pb tolerant mutant increased by 2.19-fold when exposed to 150 μM Pb(NO₃)₂.

No description available.

No description available.

Mitochondria are ubiquitous eukaryotic organelles which carry out a range of essential functions, most notably the production of ATP through the process of oxidative phosphorylation. While the main biochemical function of mitochondria was established over 50 years ago, the processes which control mitochondrial morphology are, at present, poorly understood. The thesis aims to add to our knowledge of the factors that control mitochondrial morphology and dynamics in the model plant species, Arabidopsis thaliana. The phenotypic characteristics of two novel mitochondrial morphology mutants, motley mitochondria I (mmtl) and network mitochondria (nmt), were examined and quantified. mmtl has an increased heterogeneity of mitochondrial plan area relative to wild-type, which is matched by a similar chloroplast phenotype. nmt exhibits a reticular mitochondrial morphology, similar to the mitochondria found in yeast and animals. Genetic mapping of the two mutant loci has established that mmtl resides on a short region of chromosome 11w, hile nmt was mapped to a small area of chromosome V. This thesis describes the identification and functional analysis of two novel orthologs of yeast and animal mitochondrial division genes. Using TDNA reverse genetics, it is shown that disruption of the dynamin-like DRP3A or BIGYIN (an Arabidopsis orthologue of yeast FISI) led to an increase in mitochondrial plan area, which is coupled with a decrease in the number of physically discrete mitochondria per cell. Finally, the morphology and behaviour of Arabiclopsis mitochondria is investigated upon the induction of cell death. Abiotic stress treatments that induce cell death led to fast and irreversible changes in mitochondrial morphology. The role of these changes, as possible early indicators of cell death, are discussed.

published_or_final_version / Biological Sciences / Doctoral / Doctor of Philosophy

Arabidopsis thaliana Acyl-CoA-Binding Protein 3, one of six acyl-CoA-binding proteins, is unique by the C-terminal location of its acyl-CoA-binding (ACB) domain. It promotes autophagy (ATG)-mediated leaf senescence and confers resistance to Pseudomonas syringae pv. tomato DC3000. To understand the regulation of ACBP3, a 1.7 kb 5’-flanking region of ACBP3 and its deletion derivatives were characterized using β-glucuronidase (GUS) reporter gene fusions. A 374 bp minimal fragment (-151/+223) could drive GUS expression while a 1698 bp fragment (-1475/+223) conferred maximal activity. Further, histochemical GUS staining analysis on transgenic Arabidopsis harboring the largest (1698 bp) ACBP3pro::GUS fusion displayed ubiquitous expression in floral organs and vascular bundles of leaves and stems, consistent with previous results that extracellularly localized ACBP3 functions in plant defense. A 160 bp region (-434/-274) induced GUS expression in extended darkness and conferred down-regulation in extended light. Electrophoretic mobility shift assay (EMSA) and DNase I footprinting assay showed that the DNA binding with one finger box (Dof-box, -341/-338) interacted specifically with leaf nuclear proteins from dark-treated Arabidopsis while GT-1 (-406/-401) binds both dark- and light-treated Arabidopsis, suggesting that Dof and GT-1 motifs are required to mediate circadian regulation of ACBP3. Moreover, GUS staining and fluorometric measurements revealed that a 109 bp region (-543/-434) was responsive to phytohormones and pathogens. Within this 109 bp region, an S-box of AT-rich sequence (-516/-512) was identified to bind nuclear proteins from pathogen-infected Arabidopsis leaves, providing the basis for pathogen-inducible regulation of ACBP3 expression. Hence, three cis-responsive elements (Dof, GT-1 and S-box) in the 5’-flanking region of ACBP3 were demonstrated to participate in the regulation of ACBP3. The regulation of ACBP3 by circadian control is not surprising given that defense genes are now known to be circadian-regulated; infection being anticipated at dawn coinciding with pathogen activity in spore dispersal during the light period. / published_or_final_version / Biological Sciences / Doctoral / Doctor of Philosophy

In transgenic research the precise control of transgene expression is crucial in order to obtain transformed organisms with expected desirable traits. A broad range of transgenic plants use the constitutive cauliflower mosaic virus (CaMV) 35S promoter to drive expression of selectable marker genes. Due to its strong enhancer function, this promoter can disturb the specificity of nearby eukaryotic promoters. When inserted immediately downstream of the 35S promoter in transformation vectors, special DNA sequences called insulators can prevent the influence of the CaMV35S promoter/enhancer on adjacent tissue-specific promoters for the transgene. Insulators occur naturally in organisms such as yeasts and animals but few insulators have been found in plants. Therefore, the goal of this study is to identify DNA sequences with insulator activity in Arabidopsis thaliana. A random oligonucleotide library was designed as an initial step to obtain potential insulators capable of blocking enhancer-promoter interactions in transgenic plants. Fragments from this library with insulator activity were identified and re-cloned into pB31, in order to confirm their activity. To date, one insulator sequence (CLO I-3) has been identified as likely possessing enhancer-blocking activity. Also, two other oligonucleotide sequences (CLO II-10 and CLO III-78) may possess insulator activity but more sampling is needed to confirm their activity. Further studies are needed to validate the function of plant insulator(s) and characterize their associated proteins.

Currently research has focused on insulators from non-plant species such as the fruit fly, Drosophila melanogaster. The accumulated data suggests that many different insulator sequences exist in D. melanogaster, each one containing its own different primary binding protein, while sharing similar secondary binding proteins. Together, they produce chromatin loops separating enhancers and promoters into distinct domains preventing cross-talk between them. Is this the case in plants? To approach this question, we have investigated enhancer-blocking insulators in the model plant Arabidopsis thaliana using two unrelated approaches. Firstly, we have developed an assay for the direct selection of insulators in Arabidopsis thaliana using a random oligonucleotide library. This assay helped us to define four novel insulator sequences named InI-3, InII-12, InIII-50, and InIII-78. Secondly, we have used genetic analyses to characterize potential insulator sequences originally from three non-plant species: UASrpg from the fungus Ashbya gossypii, BEAD1c from human T-cell receptors, and gypsy from D. melanogaster, that have been reported to function in A. thaliana. Our findings suggest that non-plant insulators and their protein binding sites function in plants and support the model of multiple, functional, different insulator sequences as was found in D. melanogaster. They also argue for the conservation of insulator mechanisms across species.