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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Actin Dynamics in Aspergillus nidulans

Quintanilla, Laura 03 October 2013 (has links)
Actin is a major cytoskeletal protein required for the polarized growth of filamentous fungi. Recent studies have characterized the dynamics of actin polymers in growing Neurospora crassa and identified the presence of actin patches, cables and rings. In Aspergillus nidulans actin patch and ring dynamics have been documented using fluorescent proteins tagged to actin. However, fluorescently tagged actin does not reveal the presence of actin cables. Recently, the Lifeact construct has been used to label all three actin structures in fungi. Lifeact is a 17 amino acid peptide derived from the Saccharomyces cerevisiae actin binding protein Abp140p. To better understand actin dynamics in living cells, A. nidulans was transformed with the Lifeact reporter construct. Lifeact expressing strains grew and developed as wild-type. Lifeact labeled actin localized to three different organizational patterns in mature hyphae: a sub-apical collar of endocytic actin patches that was located approximately 2µm from the apex, an apical actin array, and a sub-apical actin web. The apical actin array (AAA – Apical Actin Array) was present in the apices of forty percent of hyphae observed (n=100). The sub-apical actin web (SAW – Sub-apical Actin Web) was present in fifty percent of hyphae observed and was located at an average of 18.46 µm from the apex. It was hypothesized that this network of actin cables was associated with branch and septation site selection or associated with branch and septa formation. An alternative hypothesis was that the SAW acted as a diffusion barrier for nuclei. It was determined that the SAW was neither associated with branch or septa site selection or formation, nor did it act as a barrier for nuclei. It was observed that the AAA can retract and form the SAW. It was hypothesized that this change in actin dynamics could be connected to the faster growth rates reported for mature hyphae. Measurements of individual hyphae containing the AAA or SAW revealed that hyphae with SAWs grow 1.67 times faster than hyphae with AAAs. This data supports the hypothesis that the presence of the SAW is associated with faster rates of growth. An accumulation of circular vesicles was also observed posterior to the SAW and are believed to be woronin bodies. The identity of the circular structures was not confirmed, but the retraction of the AAA to form the SAW may act as a mechanism to transport apically formed woronin bodies to distal regions of the cell. The SAW may also act as a barrier to maintain woronin bodies in sub-apical regions of the hyphae. The Lifeact actin reporter gave clear and defined labeling of filamentous actin in A. nidulans without disturbing natural development. The use of Lifeact allowed for novel insights into actin cable dynamics present in the apical and sub-apical regions of hyphae, branch formation, and septa formation.
2

Actin-perturbing Activity of Treponema denticola Major Outer Sheath Protein (Msp) and Stress Fiber Formation/Stabilization by a Novel Peptide Conjugate Deduced from the Msp Sequence

Amin, Mohsen 23 September 2009 (has links)
The major outer sheath protein (Msp) is the most prominent surface antigen of the periodontal pathogen Treponema denticola. It mediates adhesion to extracellular matrix and dysregulation of cytoskeletal homeostasis of host cells. Disassembly of actin filaments and the coincident subcortical de novo synthesis of actin filaments in fibroblasts upon exposure to Msp were investigated with a barbed-end fluorescent labeling method. The functional impact of actin cytoskeleton disorganization was determined with a scratch wound migration assay in fibroblast monolayers and a videomicroscopy migration assay in neutrophils. Msp pretreatment had a significant inhibitory effect on the migration of the fibroblasts across a collagen substratum and inhibited the neutrophil chemotactic migration towards a chemoattractant. In a study originally aimed to find the biologically active domains of Msp that may perturb actin, short peptides were selected from the deduced and predicted surface exposed regions of Msp and investigated for their role in actin dynamics and cell motility. A novel BSA-conjugated peptide (P34BSA) was found serendipitously to induce stress fiber formation and stability in fibroblasts. This activity was found to be mediated by Rho activation and cofilin phosphorylation, which are important tandem signaling pathways in the regulation of a variety of actin-dependent cellular functions. P34BSA was internalized by the cells. Yet, a mechanistic study using low-temperature treatments and depletion of cholesterol with methyl-β-cyclodextrin (MβCD) revealed that P34BSA most likely induces actin stress fiber formation extracellularly through a Rho-dependent signaling pathway. P34BSA induced Rho activation via binding of guanosine nucleotide exchange factor p114RhoGEF to RhoA, one of many exchange factors that have been shown to play a role in activating Rho signaling. Pretreatment with P34BSA partially protected the fibroblasts against the actin-disrupting effects of cytochalasin D and latrunculin B, and the cells maintained most of their actin filaments. P34BSA treatment caused retardation of fibroblast migration on a collagen substratum. It also inhibited the chemotactic movement of neutrophils towards the chemoattractant fMLP. P34 may represent a novel amino acid sequence of a bacterial virulence protein that, when conjugated to BSA, can be used as a chemical reagent to investigate RhoA signaling pathways in host cells.
3

Actin-perturbing Activity of Treponema denticola Major Outer Sheath Protein (Msp) and Stress Fiber Formation/Stabilization by a Novel Peptide Conjugate Deduced from the Msp Sequence

Amin, Mohsen 23 September 2009 (has links)
The major outer sheath protein (Msp) is the most prominent surface antigen of the periodontal pathogen Treponema denticola. It mediates adhesion to extracellular matrix and dysregulation of cytoskeletal homeostasis of host cells. Disassembly of actin filaments and the coincident subcortical de novo synthesis of actin filaments in fibroblasts upon exposure to Msp were investigated with a barbed-end fluorescent labeling method. The functional impact of actin cytoskeleton disorganization was determined with a scratch wound migration assay in fibroblast monolayers and a videomicroscopy migration assay in neutrophils. Msp pretreatment had a significant inhibitory effect on the migration of the fibroblasts across a collagen substratum and inhibited the neutrophil chemotactic migration towards a chemoattractant. In a study originally aimed to find the biologically active domains of Msp that may perturb actin, short peptides were selected from the deduced and predicted surface exposed regions of Msp and investigated for their role in actin dynamics and cell motility. A novel BSA-conjugated peptide (P34BSA) was found serendipitously to induce stress fiber formation and stability in fibroblasts. This activity was found to be mediated by Rho activation and cofilin phosphorylation, which are important tandem signaling pathways in the regulation of a variety of actin-dependent cellular functions. P34BSA was internalized by the cells. Yet, a mechanistic study using low-temperature treatments and depletion of cholesterol with methyl-β-cyclodextrin (MβCD) revealed that P34BSA most likely induces actin stress fiber formation extracellularly through a Rho-dependent signaling pathway. P34BSA induced Rho activation via binding of guanosine nucleotide exchange factor p114RhoGEF to RhoA, one of many exchange factors that have been shown to play a role in activating Rho signaling. Pretreatment with P34BSA partially protected the fibroblasts against the actin-disrupting effects of cytochalasin D and latrunculin B, and the cells maintained most of their actin filaments. P34BSA treatment caused retardation of fibroblast migration on a collagen substratum. It also inhibited the chemotactic movement of neutrophils towards the chemoattractant fMLP. P34 may represent a novel amino acid sequence of a bacterial virulence protein that, when conjugated to BSA, can be used as a chemical reagent to investigate RhoA signaling pathways in host cells.
4

The Effects of a Cytoskeletal Drug Swinholide A on Actin Filament Dissembly in a Crowded Environment

Um, Tevin 01 January 2020 (has links)
Actin cytoskeleton reorganization plays essential roles in many cellular processes such as cell structure maintenance, cell motility, and force generation. Cytoskeletal drugs are small molecules that act on cytoskeletal components by either stabilizing or destabilizing them. Swinholide A is an actin-binding drug derived from the marine sponge. Swinholide A binds actin dimers as well as severs filaments. The main objective of this project is to determine how Swinholide A modulates actin filament assembly dynamics in the presence of macromolecular crowding. We utilize total internal reflection fluorescence (TIRF) microscopy imaging to directly visualize Swinholide A-mediated actin filament disassembly and severing. Filament disassembly and severing are evaluated by calculating actin filament lengths and length distribution controlled by Swinholide A. This study helps us better understand the fundamental mechanism by which Swinholide A affects actin assembly and disassembly dynamics. Further studies will allow for investigating new methods of treatment for a range of different diseases that have pathogenetically high levels of filamentous actin, such as cystic fibrosis, as well as a drug to combat the explosive expansion of cancers.
5

Calcium Signaling and Ca<sup>2+</sup>/Calmodulin-Dependent Kinase II Activity in Epithelial To Mesenchymal Transition

McNeil, Melissa Ann 01 December 2015 (has links)
Epithelial to mesenchymal transition (EMT) is an important process in embryonic development, tissue repair, inflammation, and cancer. During EMT, epithelial cells disassemble cell-cell adhesions, lose apicobasal polarity, and initiate migratory and invasive processes that allow individual cells to colonize distant sites. It is the means by which non-invasive tumors progress into malignant, metastatic carcinomas. In vitro, EMT occurs in two steps. First, cells spread out, increasing in surface area and pushing the colony borders out. Then cells contract, pulling away from neighboring cells and rupturing cell-cell junctions, resulting in individual highly migratory cells. Recent discoveries indicate that calcium signaling is central in EMT. Both previous data with patch clamping and new calcium imaging data show a series of calcium influxes in cells induced to undergo EMT with hepatocyte growth factor (HGF). It has also been shown that blocking calcium signaling prevents EMT from progressing normally. However, it is not known if calcium alone is sufficient to drive EMT behaviors. By experimentally triggering calcium influxes with an optigenetic cation channel, the behaviors that calcium influxes induce can be determined noninvasively, without use of drugs that may have secondary effects. The results of using the optigenetic set up along with live cell imaging are that cells become more motile and disrupt normal epithelial cell-cell adhesions. This behavior is believed to be due to increased cell contractility downstream of calcium signaling, and is dependent on Ca2+/calmodulin-dependent protein kinase II (CaMKII). When cells are pre-treated with CaMKII inhibitor before HGF addition, they undergo the spreading step of EMT without subsequent cellular contraction and rupture of cell-cell junctions. CaMKII is a protein kinase that is activated by binding Ca2+/calmodulin, and is a known downstream component of calcium signaling. CaMKII is known to affect the actin cytoskeleton by both physically bundling actin filaments to increase their rigidity, and through signaling by activation of myosin light chain kinase (MLCK), which has a role in stress fiber formation. Immunofluorescence did not show colocalization of CaMKII with actin, ruling out regulation through actin bundling. However, CaMKII does appear to have a role in stress fiber formation. EMT induced with HGF treatment results in increased numbers of stress fibers as well as trans-cellular actin network formation, both actin structures decorated with non-muscle myosin II (NMII). CaMKII inhibition not only blocks these actin formations, but it also decreases stress fiber levels below basal unstimulated levels in cells that have not been treated with HGF. This suggests that CaMKII has a role in regulating contractility through cellular actin networks, indicating a mechanism for calcium's role in cellular contractility in EMT.
6

Spatial-temporal actin dynamics during synaptic plasticity of single dendritic spine investigated by two- photon fluorescence correlation spectroscopy

Chen, Jian Hua 24 June 2013 (has links)
No description available.
7

The Role of Substrate Stiffness on the Dynamics of Actin Rich Structures and Cell Behavior

Zeng, Yukai 01 November 2014 (has links)
Cell-substrate interactions influence various cellular processes such as morphology, motility, proliferation and differentiation. Actin dynamics within cells have been shown to be influenced by substrate stiffness, as NIH 3T3 fibroblasts grown on stiffer substrates tend to exhibit more prominent actin stress fiber formation. Circular dorsal ruffles (CDRs) are transient actin-rich ring-like structures within cells, induced by various growth factors, such as the platelet-derived growth factor (PDGF). CDRs grow and shrink in size after cells are stimulated with PDGF, eventually disappearing ten of minutes after stimulation. As substrate stiffness affect actin structures and cell motility, and CDRs are actin structures which have been previously linked to cell motility and macropinocytosis, the role of substrate stiffness on the properties of CDRs in NIH 3T3 fibroblasts and how they proceed to affect cell behavior is investigated. Cells were seeded on Poly-dimethylsiloxane (PDMS) substrates of various stiffnesses and stimulated with PDGF to induce CDR formation. It was found that an increase in substrate stiffness increases the lifetime of CDRs, but did not affect their size. A mathematical model of the signaling pathways involved in CDR formation is developed to provide insight into this lifetime and size dependence, and is linked to substrate stiffness via Rac-Rho antagonism. CDR formation did not affect the motility of cells seeded on 10 kPa stiff substrates, but is shown to increase localized lamellipodia formation in the cell via the diffusion of actin from the CDRs to the lamellipodia. To further probe the influence of cell-substrate interactions on cell behavior and actin dynamics, a two dimensional system which introduces a dynamically changing, reversible and localized substrate stiffness environment is constructed. Cells are seeded on top of thin PDMS nano-membranes, and are capable of feeling through the thin layer, experiencing the stiffness of the polyacrylamide substrates below the nano-membrane. The membranes are carefully re-transplanted on top of other polyacrylamide substrates with differing stiffnesses. This reversible dynamic stiffness system is a novel approach which would help in the investigation of the influence of reversible dynamic stiffness environments on cell morphology, motility, proliferation and differentiation in various cells types.
8

Régulation biochimique et mécanique de l'assemblage de filaments d'actine par la formine / Biochemical and mechanical regulation of actin filaments assembly by formin

Kerleau, Mikaël 20 December 2017 (has links)
Pour la cellule, l’assemblage du cytosquelette d’actine joue un rôle central dans son déplacement, sa division ou sa morphogenèse. Cette réorganisation est orchestrée par des protéines régulatrices et des contraintes mécaniques. Savoir comment les combinaisons de ces actions biochimiques et physiques régulent les différentes architectures d’actine reste un véritable défi.La formine protéine est un régulateur essentiel de l’actine. Ancrée à la membrane, elle assemble les filaments d’actine (nucléation et élongation) présents dans des architectures linéaires et non branchées. La formine est impliquée notamment dans la génération de filopodes, protrusions guidant la locomotion cellulaire.Une propriété remarquable est sa capacité à suivre processivement le bout barbé d’un filament qu’elle allonge, tout en stimulant son élongation en présence de profiline. La régulation de cette processivité de la formine est encore à clarifier. C’est une caractéristique importante, intervenant dans le contrôle de la longueur des filaments, dont les connaissances sont à approfondir.L’étude de cette processivité est facilitée par l’utilisation d’un outil microfluidique novateur pour l’étude de la dynamique de multiples filaments individuels d’actine in vitro. Au sein d’une chambre en PDMS, les filaments sont ancrés à la surface par un seul bout, le reste s’alignant avec le flux. Nous pouvons précisément y changer l’environnement biochimique,tandis que la friction visqueuse sur les filaments permet d’exercer une tension contrôlée sur chacun d’entre eux.Simultanément à l’action de la formine au bout barbé, j’étudie l’effet d’autres protéines ou de la vitesse d’élongation sur sa processivité, en mesurant son taux de détachement. Par ailleurs nous pouvons reproduire l’ancrage membranaire cellulaire en attachant spécifiquement nos formines à la surface. Dans la chambre, par l’intermédiaire du filament qu’elle allonge, nous pouvons alors exercer des forces et en étudier l’effet sur la formine.Premièrement, j’ai étudié l’impact de la protéine de coiffe (CP) sur l’activité de la formine au bout barbé. La liaison de ces deux protéines aubout barbé a jusqu’ici été considérée mutuellement exclusive. Nous avons observé qu’elles peuvent toutefois se retrouver simultanément liées au bout barbé, au sein d’un complexe à courte durée de vie. Ce complexe ternaire est capable de stopper l’activité du bout barbé même si l’affinité d’une protéine est réduite par la présence de l’autre. Nous proposons qu’une compétition entre la protéine de coiffe et la formine régule la dynamique du bout barbé dans des architectures où les longueurs doivent être hautement contrôlées.J’ai ensuite étudié l’influence de divers facteurs sur la processivité. La processivité est très sensible à la présence du sel et à la fraction demarquage fluorescent utilisée dans nos expériences. Nous avons également observé l’effet de la vitesse d’élongation, qui peut être modifiée en changeant la concentration en actine ou en profiline. D’une part, l’actine réduit la processivité, à n’importe quelle concentration de profiline. D’autre part, la concentration en profiline augmente cette processivité,indépendamment du taux d’élongation. Cela suggère qu’une incorporation de monomère diminue la processivité, tandis que la profiline, par sa présence au bout barbé, l’augmente.Enfin, la tension exercée sur les formines abaisse fortement la processivité : quelques piconewtons réduisent la processivité de plusieurs ordres de grandeurs. Cet effet, purement mécanique, prédomine sur les facteurs biochimiques. Ces résultats nous indiquent que les contraintes mécaniques de tension joueraient un rôle prédominant dans le contexte cellulaire. Cette étude nous aide à construire un modèle plus complet de l’élongation processive par les formines.En conclusion, ce projet permet de mieux comprendre le fonctionnement moléculaire de la formine, en particulier le mécanisme de l’élongation processive et de sa régulation / Actin filament assembly plays a pivotal role in cellular processes such as cell motility, morphogenis or division. Elucidating how the actin cytoskeleton is globally controlled remains a complex challenge. We know that it is orchestrated both by actin regulatory proteins and mechanical constraints.The formin protein is an essential actin regulator. Anchored to the cell membrane, it is responsible for the assembly (nucleation and elongation) of actin filaments found in linear and unbranched architectures. It is notably involved in the generation of filopodia protrusions at the leading edge of a motile cell. One important feature is that it processively tracks the barbed end of an actin filament, while stimulating its polymerization in the presence of profilin.Formin processivity and its regulation is not yet completely understood. As an important factor determining the length of the resulting filament, it must be investigated further.A perfect assay to look at formin processivity in vitro is an innovative microfuidics assay coupled to TIRF microscopy, pioneered by the team, to simultaneously track tens of individual filaments. In a designed chamber,filaments are anchored to the surface by one end, and aligned with the solution flow. We can precisely control the biochemical environment of the filaments. Moreover, we can exert and modulate forces on filaments, due to the viscous drag of flowing solutions. By varying chemical conditions during formin action at the barbed end, I investigated how others proteins or the elongation rate can modulate formin processivity, by looking at the detachment rate of formins.Moreover, we can mimic the membrane anchoring in the cell by specifically attaching formins at the surface. In our chamber, through the filament they elongate, we can apply force to formins.In complement to biochemical studies, we then investigate the effect oftension on their processivity.I first investigated the impact of a capping protein on formin action at the barbed end. Their barbed end binding is thought to be mutually exclusive.We measured that the affinity of one protein is reduced by the presence of the other. However we observed they both can bind simultaneously the barbed end, in a transient complex, which block barbed end elongation.Competition of formin and CP would regulate barbed end dynamics in a cell situation where length is tightly controlled.I next studied formin processivity dependence on various parameters. We show that processivity is sensitive to salt and labelling fraction used in our solutions. We also looked at how processivity is affected by the elongation rate, which can either be varied by actin or profilin concentration. On one hand, actin concentration reduces processivity, at any given concentrationsof profilin. On the other hand, raising the concentration of profilin increasesprocessivity, regardless of the elongation rate. This indicates that theincorporation of actin monomers decreases processivity while in contrast,the presence of the profilin at the barbed end increases it.Moreover, tension exerted on formin was observed to largely favor its detachment. In a quantitative matter, the effect of tension prevails over anyothers biochemical factor on processivity : only a few piconewtons decreaseit by several orders of magnitude. This important effect helps us build amore complete model of processive elongation. These results indicate thatmechanical stress is likely to play an important role in a cellular context.In conclusion, this project brings insights into the molecular properties offormin and helps to decipher the mechanism of processive elongation and its regulation.
9

Inhibition of Cell Adhesion and Actin Localization During Migration Upon Protective Antigen Mutant Ligand Binding to the Capillary Morphogenesis Gene 2

Lee, Sai Lun 15 April 2022 (has links)
Capillary Morphogenesis Gene 2 protein (CMG2) is a type 1 transmembrane receptor known as the anthrax toxin receptor 2 (ANTXR2). While it is documented that the cell surface receptor CMG2 mediates anthrax toxin entry into the cell via endocytosis, the physiological role of CMG2 is not well understood. Others have suggested that CMG2 may have a role in mediating ECM homeostasis and angiogenesis. Additionally, both anthrax protective antigen (PA) and a furin protease-resistant mutant, PASSSR, inhibit corneal neovascularization in a mouse model, and interestingly PASSSR has a greater affinity to CMG2 receptor. PASSSRalso has a more potent antiangiogenic effect than wild-type PA. However, a mechanism for PASSSR inhibition of the putative CMG2 role in angiogenesis is not yet elucidated. The experimental results in this thesis provide evidence that CMG2 is the key receptor for regulating adhesion, migration, and actin dynamics in cells, and 200-pM PASSSR inhibits cell adhesion, migration, and actin localization at the cell leading edge. Furthermore, we observed that PASSSR remains bound to CMG2 under acidic conditions similar to the lysosome (pH 4). This observation suggests that the PASSSR-CMG2 complex remains intact following internalization and traffic to lysosomes, different from previous reports for PA, which likely results in CMG2 recycling. Together, these results suggest that following PASSSR treatment, CMG2 traffics to the lysosome for degradation; hence, we predict fewer CMG2 receptors are available at the cell surface to function in their native role in signaling angiogenic processes such as adhesion and chemotaxis towards vascular growth factors.
10

WASH and WAVE Actin Regulators of the Wiskott-Aldrich Syndrome Protein (WASP) Family Are Controlled by Analogous Structurally Related Complexes

Jia, Da, Gomez, Timothy S., Metlagel, Zoltan, Umetani, Junko, Otwinowski, Zbyszek, Rosen, Michael K., Billadeau, Daniel D. 08 June 2010 (has links)
We recently showed that the Wiskott-Aldrich syndrome protein (WASP) family member,WASH, localizes to endosomal subdomains and regulates endocytic vesicle scission in an Arp2/3-dependent manner. Mechanisms regulating WASH activity are unknown. Here we show that WASH functions in cells within a 500 kDa core complex containing Strumpellin, FAM21, KIAA1033 (SWIP), and CCDC53. Although recombinant WASH is constitutively active toward the Arp2/3 complex, the reconstituted core assembly is inhibited, suggesting that it functions in cells to regulate actin dynamics through WASH. FAM21 interacts directly with CAPZ and inhibits its actin-capping activity. Four of the five core components show distant (approximately 15% amino acid sequence identify) but significant structural homology to components of a complex that negatively regulates the WASP family member, WAVE. Moreover, biochemical and electron microscopic analyses show that the WASH and WAVE complexes are structurally similar. Thus, these two distantly related WASP family members are controlled by analogous structurally related mechanisms. Strumpellin is mutated in the human disease hereditary spastic paraplegia, and its link to WASH suggests that misregulation of actin dynamics on endosomes may play a role in this disorder.

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