Thesis (M.S.)--University of Missouri-Columbia, 2008. / The entire dissertation/thesis text is included in the research.pdf file; the official abstract appears in the short.pdf file (which also appears in the research.pdf); a non-technical general description, or public abstract, appears in the public.pdf file. "August 2008" Includes bibliographical references.

Thesis(M.S.)--Auburn University, 2007. / Abstract. Vita. Includes bibliographic references.

Thesis (M.S.)--Brigham Young University. Dept. of Statistics, 2007. / Includes bibliographical references (p. 46-49).

Thesis (M.S.)--Miami University, Dept. of Chemistry and Biochemistry, 2008. / Title from first page of PDF document. Non-Latin script record Includes bibliographical references.

Regensburg, Univ., Diss., 2009.

Thesis (Ph. D.)--Ohio State University, 2007. / Title from first page of PDF file. Includes bibliographical references (p. 158-183).

Chapter 1: Introduction and Literature Review; Chapter 2: A retrospective study of anthrax on the Ghaap plateau, Northern Cape Province of South Africa, with special reference to the 2007 - 2008 outbreaks; Chapter 3: Insights gained from sample diagnostics during anthrax outbreaks in the Kruger National Park, South Africa; Chapter 4: Through the lens: a microscopic and molecular evaluation of archival blood smears from the 2010 anthrax outbreaks in Kruger National Park, South Africa; Chapter 5: A distribution snapshot of anthrax in South Africa: multiple locus variable number of tandem repeats analyses of Bacillus anthracis isolates from epizootics spanning 4 decades across southern Africa; Chapter 6: Isolation and Whole Genome Analysis of a Lytic Bacteriophage Infected Bacillus anthracis Isolate from Pafuri, South Africa; Chapter 7: Characterisation of temperate bacteriophages infecting Bacillus cereus sensu stricto group in the anthrax endemic regions of South Africa; Chapter 8: General discussion, conclusions and recommendations. / Thesis (PhD)--University of Pretoria, 2016. / German Research Foundation (DFG) / National Research Foundation (NRF) of South Africa. / Veterinary Tropical Diseases / PhD / Unrestricted

Anthrax, a fatal bacterial infection is caused by Bacillus anthracis, a gram-positive, spore forming, capsulated, rod shaped organism. Centers for Disease Control (CDC) lists anthrax as Category A biological agent due to its severity of impact on human health, high mortality rate, acuteness of the disease and potential for delivery as a biological weapon. The currently available human vaccine in the United States (AVA anthrax vaccine adsorbed) is prepared from Alum adsorbed formalin treated supernatant culture of toxigenic, non-encapsulated strain of Bacillus anthracis with the principle component being protective antigen (PA83). Evaluation of anthrax vaccine given to nearly 400,000 US military personnel by Vaccine Adverse Event Reporting System (VAERS) showed adverse effects such as flu-like symptoms, local pain, large degree of inflammation, edema, malaise, rash, arthralgia, and headache following vaccination. All the adverse reactions are attributed to the composition of vaccine components. These vaccine preparations contain trace contaminants of lethal and edema factors that contribute to the adverse side effects. Also, the current method of vaccine manufacture has limited production capacity.The production of PA83, in plants through chloroplast genetic engineering might eliminate the concerns of adverse side effects and the levels of expression would ensure the availability of vaccine for the human population in an environmentally friendly approach. The primary concern is whether the PA83 purified from transgenic chloroplasts is as immunogenic as the PA83 in the AVA. For this, PA83 has been expressed in transgenic chloroplasts of Nicotiana tabacum var. petit Havana, by inserting the pag (2205 bp) with the N-terminal 6X histidine tag, into the chloroplast genome by homologous recombination. Chloroplast integration of the pag was confirmed by PCR and Southern analysis. The PA83 protein was detected in transgenic chloroplasts by immunoblot analysis using anti-PA83 antibodies. Maximum expression levels of PA83 (14.17% TSP) were observed in mature leaves upon continuous illumination, due to the presence psbA 5'UTR, a light and developmentally regulated translation enhancer sequence. The PA83 has been purified by affinity chromatography using Ni resin columns. Chloroplast derived PA83 was functional in vitro and was able to lyse the mouse macrophages when combined with the lethal factor. The in vitro assays showed that the crude extracts contained up to 20ug/ml of functional PA83.The immunization studies of PA83 on Balb/c mice, revealed highly immunogenic IgG titers. Subcutaneous immunization with purified chloroplast derived PA83 with adjuvant yielded IgG titers up to 1:320,000, similar to that of the group immunized with PA83 derived from Bacillus anthracis. Immunization of groups with PA83 combined with alhydrogel adjuvant showed four - eight times higher immune response than the groups without adjuvant. The higher expression levels of PA83 in transgenic chloroplasts might ensure the availability of anthrax vaccine to the general public and the high immune response observed in the mouse model would enable the replacement of the current AVA with a cleaner and safer vaccine.

L'introduction délibérée dans l'air de microorganismes pathogènes représente une menace. Parmi les armes bactériologiques les plus craintes, on retrouve les spores de Bacillus anthracis. La possibilité de faire face à des souches de B. anthracis, porteuses de résistances aux antibiotiques, est bien réelle. Le but du projet est de développer une méthode rapide de détection des résistances aux antibiotiques pour les spores de Bacillus sp. Cette méthode doit pouvoir être utilisée avec un système de détection permettant une analyse cellule par cellule. Les techniques de FISH (Fluorescent In Situ Hybridization) et de PCR in situ sont appropriées dans cette situation. Présentement, le seul protocole de perméabilisation des spores de Bacillus sp. pour la détection in situ nécessite trois jours. Les objectifs spécifiques de cette thèse étaient de (i) développer un protocole de perméabilisation rapide des spores permettant de faire du FISH et (ii) développer des méthodes in situ afin de détecter des séquences de gènes de résistance aux antibiotiques d'origines plasmidique et chromosomique. Deux approches ont été utilisées pour perméabiliser les spores soit la germination rapide et la perméabilisation directe. Ensuite, les techniques d'amplification enzymatique du signal FISH et de PCR in situ ont été mises au point pour les spores. Des souches simulantes nonpathogènes de B. anthracis, soit B. aetropheus et B. cereus ATCC 14579 ont été utilisées comme modèle pour les expériences. La germination rapide des spores permet une détection par FISH en moins de deux heures comparativement à la perméabilisation directe des spores qui permet une détection en moins d'une heure. Les techniques d'amplification enzymatique du signal FISH et le PCR in situ ont permis la détection du gène de résistance au chloramphénicole présent sur le plasmide à haute copie pC 194. Le PCR in situ a permis la détection du gène de résistance à l'érythromycine porté par le plasmide à faible copie pMTL ainsi que d'une mutation, d'origine chromosomique, responsable de la résistance à la rifampicine. Cette thèse démontre qu'il est possible de détecter, directement dans la spore de Bacillus sp., des gènes de résistance aux antibiotiques, même s'ils sont présents en faible nombre de copies.

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