Glycerol thermal processing (GTP) is studied as a novel biomass pretreatment method in this research with the purposes to facilitate biopolymer fractionation and biomass saccharification. This approach is performed by treating sweet gum particles on polymer processing equipment at high temperatures and short times in the presence of anhydrous glycerol. Nine severity conditions are studied to assess the impact of time and temperature during the processing on biopolymer structure and conversion. The GTP pretreatment results in the disruption of cell wall networks by increasing the removal of side-chain sugars and lignin-carbohydrate linkages based on severity conditions. After pretreatment, 41% of the lignin and 68% of the xylan is recovered in a dry powdered form by subsequent extractions without additional catalysts, leaving a relatively pure cellulose fraction, 84% glucan, as found in chemical pulps. Lignin structural analysis indicated GTP processing resulted in extensive degradation of B-aryl ether bonds through the C-y elimination, followed by abundant phenolic hydroxyl liberation. At the same time, condensation occurred in the GTP lignin, providing relatively high molecular weight, near to that of the enzymatic mild acidolysis lignin. Better thermal stability was observed for this GTP lignin. In addition to lignin, xylan was successfully isolated as another polymer stream after GTP pretreatment. The recovered water insoluble xylan (WIX) was predominant alkali soluble fraction with a maximum purity of 84% and comparable molecular weight to xylan isolated from non-pretreated fibers. Additionally, the narrow molecular weight distribution of recovered WIX, was arisen from the pre-extraction of low molecular weight water-soluble xylan. Additionally, a 20-fold increase of the ultimate enzymatic saccharification for GTP pretreated biomass was observed even with significant amounts of lignin and xylan remaining on the non-extracted fiber. The shear and heat processing caused a disintegrated cell wall structure with formation of biomass debris and release of cellulose fibrils, enhancing surface area and most likely porosity. These structural changes were responsible for the improved biomass digestibility. Additionally, no significant inhibitory compounds for saccharification are produced during GTP processing, even at high temperatures. While lignin extraction did not promote improvement in hydrolysis rates, further xylan extraction greatly increases the initial enzymatic hydrolysis rate and final level of saccharification. The serial of studies fully demonstrate glycerol thermal processing as a novel pretreatment method to enhance biomass saccharification for biofuel production, as well as facilitate biopolymer fractionation. Moreover, the study shows the impact of thermally introduced structural changes to wood biopolymers when heated in anhydrous environments in the presence of hydrogen bonding solvent. / Ph. D.

Thesis (PhD)--Stellenbosch University, 2014. / ENGLISH ABSTRACT: Increased demand of petroleum, declining fossil fuel reserves, geopolitical instability and the environmentally detrimental effects of fossil fuels have stimulated research to search for alternative sources of energy such as plant derived biofuels. The main feedstocks for production of first generation biofuels (bioethanol) are currently sucrose and starch, produced by crops such as sugarcane, sugarbeet, maize, and cassava. The use of food crop carbohydrates to produce biofuels is viewed as competing for limited agronomic resources and jeopardizing food security. Plants are also capable of storing sugars in their cell walls in the form of polysaccharides such as cellulose, hemicelluloses and pectin, however those are usually cross-linked with lignin, making their fermentation problematic, and are consequently referred to as lignocellulosics. Current technologies are not sufficient to degrade these cell wall sugars without large energy inputs, therefore making lignocellulosic biomass commercially unviable as a source of sugars for biofuel production. In the present study genes encoding for enzymes for cellulosic, hemicellulosic and starch-like polysaccharides biosynthesis were heterologously expressed to increase the amount of fermentable sugars in sugarcane. Transgenic lines heterologously expressing CsCesA, encoding a cellulose synthase from the marine invertebrate Ciona savignyi showed significant increases in their total cellulose synthase enzyme activity as well as the total cellulose content in internodal tissues. Elevation in cellulose contents was accompanied by a rise in hemicellulosic glucose content and uronic acid amounts, while total lignin was reduced in internodal tissues. Enzymatic saccharification of untreated lignocellulosic biomass of transgenic sugarcane lines had improved glucose release when exposed to cellulose hydrolyzing enzymes. Calli derived from transgenic sugarcane lines ectopically expressing galactomannan biosynthetic sequences ManS and GMGT from the cluster bean (Cyamopsis tetragonoloba) were observed to be capable of producing a galactomannan polysaccharide. However, after regeneration, transgenic sugarcane plants derived from those calli were unable to produce the polymer although the inserted genes were transcribed at the mRNA level. While the ectopic expression of Deinococcus radiodurans amylosucrase protein in the cytosol had a detrimental effect on the growth of transgenic lines (plants showed stunted growth through the 18 months growth period in greenhouse), contrastingly targeting the amylosucrase protein into the vacuole resulted in 3 months old transgenic lines which were having high maltooligosaccharide and soluble sugar (sucrose, glucose and fructose) levels in leaves. After 18 months growing in the greenhouse, the mature transgenic lines were morphologically similar to the untransformed lines and also contained comparable maltooligosaccharide and soluble sugar and starch amounts. The non-biosynthesis of galactomannan and amylose polysaccharides in the matured transgenic plants may be due to post-transcriptional protein processing and or protein instability, possibly explainable by other epigenetic mechanisms taking place to regulate gene expression in the at least allo-octaploid species of sugarcane under investigation in this study.

Non-edible plant biomass (lignocellulose) is a valuable precursor for liquid biofuels, through the processes of pretreatment and saccharification followed by fermentation into products such as ethanol or butanol. However, it is difficult to gain access to the fermentable sugars in lignocellulose, and this problem is principally associated with limited enzyme accessibility. Hence, biomass pretreatments that destroy native cell wall structure and allows enzyme access are required for effective biomass conversion techniques. This research studied two novel pretreatment methods on two wood species: 1) a deep eutectic solvent (DES) that, under heat, swells lignocellulose and partially solubilizes cell wall materials by causing breakage of lignin-carbohydrate linkages and depolymerization of the biomass components, and 2) a chelator-mediated Fenton reaction (CMF) that chemically modifies the nanostructure of the cell wall through a non-enzymatic cell wall deconstruction. After pretreatment, utilizing analytical techniques such as nuclear magnetic spectroscopy, wide angle x-ray scattering, and gel permeation chromatography, samples were analyzed for chemical and structural changes in the solubilized and residual materials. After single stage DES (choline-chloride-glycerol) and two stage, CMF followed by DES pretreatments, lignin/carbohydrate fractions were recovered, leaving a cellulose-rich fraction with reduced lignin and hemicellulose content as determined by compositional analysis. Lignin and heteropolysaccharide removal by DES was quantified and the aromatic-rich solubilized biopolymer fragments were analyzed as water insoluble high molecular weight fractions and water-ethanol soluble low molecular weight compounds. After pretreatment for the hardwood sample, enzyme digestibility reached a saccharification yield of 78% (a 13-fold increase) for the two stage (DES/CMF) pretreated biomass even with the presence of some lignin and xylan remained on the pretreated fiber; only a 9-fold increase was observed after the other sequence of CMF followed by DES treatment. Single stage CMF treatment or single stage DES pretreatment improved 5-fold glucose yield compared to the untreated sample for the hardwood sample. The enhancement of enzymatic saccharification for softwood was less than that of hardwoods with only 4-fold increase for the sequence CMF followed by DES treatment. The other sequence of treatments reached up to 2.5-fold improvement. A similar result was determined for the single stage CMF treatment while the single stage DES treatment reached only 1.4-fold increase compared to the untreated softwood. Hence, all these pretreatments presented different degrees of biopolymer removal from the cell wall and subsequent digestibility levels; synergistic effects were observed for hardwood particularly in the sequence DES followed by CMF treatment while softwoods remained relatively recalcitrant. Overall, these studies revealed insight into two novel methods to enhance lignocellulosic digestibility of biomass adding to the methodology to deconstruct cell walls for fermentable sugars. / Ph. D. / Wood is a valuable material that can be used to produce liquid biofuels. Wood main components are biopolymers cellulose, hemicellulose and lignin that form a complex structure. Nature has locked up cellulose in a protective assembly that needs to be destroyed to gain access to cellulose, convert it to glucose and then ferment it to bioalcohol. This process is principally associated with limited enzyme accessibility. Therefore, biomass pretreatments that deconstruct native cell wall structure and allow enzyme access are required for effective biomass conversion techniques. This research studied two novel pretreatment methods on two wood species: 1) a deep eutectic solvent called glyceline that, under heat, swells wood and partially solubilizes cell wall materials by causing breakage of bonds and converting it into smaller molecules (monomers and oligomers), and 2) a chelator-mediated Fenton system (CMF) that chemically modifies the structure of the cell wall. Pretreatments were tested individually and in sequence in sweetgum and southern yellow pine. After pretreatments, utilizing analytical techniques, fractions were investigated for chemical and structural changes in the solubilized and residual materials. Treated wood samples were exposed to enzymatic conversion. A maximum 78% of glucose yield was obtained for the glyceline followed by CMF pretreated wood. For yellow pine only a 24% of glucose yield was obtained for the CMF followed by glyceline treatment. All these pretreatments presented different degrees of biopolymer removal from the cell wall and subsequent enzyme conversion levels. Overall, these studies revealed insight into two novel methods to enhance wood conversion adding to the methodology to deconstruct cell walls for fermentable sugars.

Atualmente há grande interesse no desenvolvimento de processos enzimáticos eficientes para a hidrólise da biomassa lignocelulósica. O objetivo deste trabalho foi a otimização da produção por fermentação em estado sólido e a caracterização bioquímica, no extrato bruto, das -glucosidases, -xilosidases e xilanases produzidas por Colletotrichum graminicola e das lacases produzidas por Pycnoporus sanguineus. Também foi avaliado o potencial de aplicação dos extratos obtidos em coquetéis enzimáticos para a sacarificação de resíduos agroindustriais. A otimização das condições de cultivo, empregando a Metodologia de Superfície de Resposta, levou à produção de 159,3 ± 12,7 U g-1, 125,88 ± 6,4 U g-1, 378,1 ± 23,3 U g-1 e 138,6 ± 6,4 U g-1 de -glucosidases, -xilosidases, xilanases e lacases, respectivamente. Os meios de cultivo empregados foram constituídos por farelo de trigo suplementado com resíduos agroindustriais. Todas as enzimas produzidas apresentaram pH e temperatura ótimos de reação de 4,5-5,0 e 65ºC, respectivamente, bem como boa estabilidade térmica e ao pH. O coquetel composto pelos extratos brutos obtidos em condições otimizadas para a produção de xilanases (ECg) e lacases (EPs), em mistura com um extrato bruto de Trichoderma reesei rico em celulases (ETr) foi muito eficiente na sacarificação de palha de cana e papelão, sem pré-tratamento, atingindo rendimentos de 41,4 e 71,1% em glicose, respectivamente. Além disso, este coquetel foi mais eficiente na sacarificação de bagaço de cana explodido e in natura bem como de palha de cana in natura, quando comparado a um coquetel contendo celulases comerciais (Celluclast®) em mistura com ECg e EPs. Visando estudos futuros da ação individual de cada enzima sobre a biomassa, foi purificada uma -glucosidase majoritária de C. graminicola. A enzima mostrou temperatura e pH ótimos de reação de 5,0 e 65ºC, respectivamente, boa estabilidade térmica e ao pH, além da estimulação por xilose, propriedade muito interessante para emprego em coquetéis mistos de celulases e xilanases. Os resultados encontrados sugerem que as enzimas produzidas por C. graminicola e P. sanguineus, assim como os coquetéis enzimáticos avaliados, apresentam características muito interessantes para aplicações biotecnológicas, particularmente em processos de sacarificação da biomassa para obtenção de etanol celulósico. / There is currently a great interest in developing efficient processes for the enzymatic hydrolysis of lignocellulosic biomass. The objective of this study was the optimization of the culture conditions for the production of -glucosidases, xylanases and -xylosidases by Colletotrichum graminicola and laccases by Pycnoporus sanguineus under solid state fermentation, followed by the biochemical characterization of the enzymes in the crude extracts. The potential of application of the extracts to compose enzyme cocktails for the saccharification of agroindustrial residues was also investigated. Optimization of the culture conditions using the Response Surface Methodology led to the production of 159.3 ± 12.7 U g - 1, 125.88 ± 6.4 U g- 1, 378.1 ± 23.3 U g - 1 and 138.6 ± 6.4 U g - 1 of -glucosidases, -xylosidases, xylanases and laccases, respectively. The culture media employed consisted mainly of wheat bran, supplemented with agroindustrial residues. All enzymes produced showed optimum pH and temperature of 4.5-5.0 and 65° C, respectively, as well as good thermal and pH stability. A cocktail composed of the crude extracts obtained under optimized conditions for the production of xylanases (ECg) and laccases (EPs), mixed with a Trichoderma reesei crude extract (ETr), rich in cellulases, was highly efficient for the saccharification of sugarcane trash and cardboard, without pretreatment, reaching yields of 41.4% and 71.1% in glucose, respectively. Moreover, this cocktail was more efficient than a cocktail composed of commercial cellulases (Celluclast ®) in combination with ECg and EPs for the saccharification of raw and steam exploded sugarcane bagasse, as well as raw sugarcane trash. Aiming future studies on the individual action of each enzyme on biomass, a majoritary -glucosidase from C. graminicola was purified. The enzyme showed optima of temperature and pH of 5.0 and 65° C, respectively, good thermal and pH stability, as well as stimulation by xylose, a very interesting property for its application in mixed cellulase-xylanase cocktails. The results suggested that the enzymes produced by C. graminicola and P. sanguineus, as well as the cocktails employed in this study, have good potential for biotechnological applications, particularly in biomass saccharification processes for cellulosic ethanol production.

Atualmente há grande interesse no desenvolvimento de processos enzimáticos eficientes para a hidrólise da biomassa lignocelulósica. O objetivo deste trabalho foi a otimização da produção por fermentação em estado sólido e a caracterização bioquímica, no extrato bruto, das -glucosidases, -xilosidases e xilanases produzidas por Colletotrichum graminicola e das lacases produzidas por Pycnoporus sanguineus. Também foi avaliado o potencial de aplicação dos extratos obtidos em coquetéis enzimáticos para a sacarificação de resíduos agroindustriais. A otimização das condições de cultivo, empregando a Metodologia de Superfície de Resposta, levou à produção de 159,3 ± 12,7 U g-1, 125,88 ± 6,4 U g-1, 378,1 ± 23,3 U g-1 e 138,6 ± 6,4 U g-1 de -glucosidases, -xilosidases, xilanases e lacases, respectivamente. Os meios de cultivo empregados foram constituídos por farelo de trigo suplementado com resíduos agroindustriais. Todas as enzimas produzidas apresentaram pH e temperatura ótimos de reação de 4,5-5,0 e 65ºC, respectivamente, bem como boa estabilidade térmica e ao pH. O coquetel composto pelos extratos brutos obtidos em condições otimizadas para a produção de xilanases (ECg) e lacases (EPs), em mistura com um extrato bruto de Trichoderma reesei rico em celulases (ETr) foi muito eficiente na sacarificação de palha de cana e papelão, sem pré-tratamento, atingindo rendimentos de 41,4 e 71,1% em glicose, respectivamente. Além disso, este coquetel foi mais eficiente na sacarificação de bagaço de cana explodido e in natura bem como de palha de cana in natura, quando comparado a um coquetel contendo celulases comerciais (Celluclast®) em mistura com ECg e EPs. Visando estudos futuros da ação individual de cada enzima sobre a biomassa, foi purificada uma -glucosidase majoritária de C. graminicola. A enzima mostrou temperatura e pH ótimos de reação de 5,0 e 65ºC, respectivamente, boa estabilidade térmica e ao pH, além da estimulação por xilose, propriedade muito interessante para emprego em coquetéis mistos de celulases e xilanases. Os resultados encontrados sugerem que as enzimas produzidas por C. graminicola e P. sanguineus, assim como os coquetéis enzimáticos avaliados, apresentam características muito interessantes para aplicações biotecnológicas, particularmente em processos de sacarificação da biomassa para obtenção de etanol celulósico. / There is currently a great interest in developing efficient processes for the enzymatic hydrolysis of lignocellulosic biomass. The objective of this study was the optimization of the culture conditions for the production of -glucosidases, xylanases and -xylosidases by Colletotrichum graminicola and laccases by Pycnoporus sanguineus under solid state fermentation, followed by the biochemical characterization of the enzymes in the crude extracts. The potential of application of the extracts to compose enzyme cocktails for the saccharification of agroindustrial residues was also investigated. Optimization of the culture conditions using the Response Surface Methodology led to the production of 159.3 ± 12.7 U g - 1, 125.88 ± 6.4 U g- 1, 378.1 ± 23.3 U g - 1 and 138.6 ± 6.4 U g - 1 of -glucosidases, -xylosidases, xylanases and laccases, respectively. The culture media employed consisted mainly of wheat bran, supplemented with agroindustrial residues. All enzymes produced showed optimum pH and temperature of 4.5-5.0 and 65° C, respectively, as well as good thermal and pH stability. A cocktail composed of the crude extracts obtained under optimized conditions for the production of xylanases (ECg) and laccases (EPs), mixed with a Trichoderma reesei crude extract (ETr), rich in cellulases, was highly efficient for the saccharification of sugarcane trash and cardboard, without pretreatment, reaching yields of 41.4% and 71.1% in glucose, respectively. Moreover, this cocktail was more efficient than a cocktail composed of commercial cellulases (Celluclast ®) in combination with ECg and EPs for the saccharification of raw and steam exploded sugarcane bagasse, as well as raw sugarcane trash. Aiming future studies on the individual action of each enzyme on biomass, a majoritary -glucosidase from C. graminicola was purified. The enzyme showed optima of temperature and pH of 5.0 and 65° C, respectively, good thermal and pH stability, as well as stimulation by xylose, a very interesting property for its application in mixed cellulase-xylanase cocktails. The results suggested that the enzymes produced by C. graminicola and P. sanguineus, as well as the cocktails employed in this study, have good potential for biotechnological applications, particularly in biomass saccharification processes for cellulosic ethanol production.