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Materials in contact with the biological milieu (biomaterials) spontaneously and nonspecifically adsorb constituent proteins which may lead to unwanted cell adhesion and responses or hinder device performance. These interactions and their related phenomena lead to complications in ~3% of implant surgeries. Thus, resistance to these nonspecific interactions is critical to the performance of many implanted biomaterials and biosensing surfaces. Further, these interactions have widespread importance to industrial materials in contact with biological environments such as food packaging, and agricultural and nautical surfaces. Thin film coatings of antifouling polymers are one of the leading methods for reducing nonspecific interactions. Both polymer composition (chemical composition and molecular weight) and polymer grafting density are the principal determinants of coating performance. For applications requiring specific bioactivity, such as selective ligand-analyte interactions for sensors, the polymer coating must remain antifouling and be amenable to functionalization with capture ligands. Tethered polymer coatings can be made by surface initiated polymerization (“graft-from”) which results in higher density coatings, but complex fabrication limits commercialization and capacity of functionalization with capture ligands. Simpler “graft-to” procedures, where pre synthesized polymers are immobilized to a surface, are more amenable to translation but suffer from inferior antifouling properties due to lower density coatings. New fabrication methods are therefore required to improve both graft-to and graft-from coatings. Herein, the effects of polymer density on material performance are explored and leveraged to produce novel functional surfaces using two classes of polymers, namely amphiphilic and thermoresponsive poly(oligo(ethylene glycol)) methyl ether methacrylate, and zwitterionic, functionalizable poly(carboxybetaine methacrylamide) (pCB), as well as copolymers thereof. Specifically, polymer grafting techniques which exploit grafting density effects on surfaces were developed, leading to surfaces: 1) that are both high-loading and antifouling due to two different grafting densities within bimodal architectures, and (2) with enhanced anti-fouling properties despite being prepared via a “grafting-to” method using shrinkable or expandable substrates. Interestingly, shrinking substrates with antifouling polymers resulted in a novel LSPR biosensor with high translation potential. Chapter 2 describes the pH controlled, one-pot production of two-layer brushes composed of an antifouling dense layer and a high-loading lower density layer where capture ligand immobilization was improved by 6 times compared to a single high density layer. Towards improving fouling and bioactivity of graft-to surfaces, Chapter 3 describes the first demonstration of Graft-then-Shrink where a stretched polystyrene (PS) substrate coated in a thin gold layer modified with thiol-terminated pCB was thermo-shrunk to one sixth in footprint to increase polymer surface coating content for enhanced antifouling properties and the production of micro/nano gold wrinkles to generate a localized surface plasmon resonance (LSPR) active surface. The low-cost sensors can vi detect biomolecular interactions by tracking changes in absorbance in the visible spectrum using ubiquitous plate readers. In Chapter 4, Graft-then-Shrink was extended to elastomeric materials, where thiol terminated polymers were grafted onto solvent swollen silicone via thiol-maleimide click chemistry, producing strongly antifouling materials. Taken together, these developments represent significant advances in the preparation and application of antifouling polymer coatings towards the improvement of antifouling surface properties of medical devices and resulted in the development of a novel, low-cost LSPR sensor without the need for specialized equipment. / Thesis / Doctor of Philosophy (PhD) / When a material, such as a medical implant or sensor, is placed in contact with tissues and biological fluids, biomolecules stick to the exposed surfaces through nonspecific interactions. It is important to minimize nonspecific interactions because they can lead to bacterial infections, inflammation, implant failure and loss of device performance. Coatings to minimize nonspecific interactions therefore remain an active area of research. In this thesis, we explored new methods to create biomolecule and cell repellent coatings of long, chainlike molecules known as polymers grafted onto surfaces. Specific types of polymers, known as antifouling, were particularly effective at reducing these interactions. Although it is important to block nonspecific interactions, many devices require bioactive surfaces through selective interactions. For example, sensors for analysis of blood products require the selective binding of the target ligand with minimal binding of non-target agents. To this end, functionalizable antifouling polymers are often modified with a capture or binding agent corresponding to the target ligand. Polymer coatings which are both antifouling and functionalizable for specific interactions, are called “romantic” because of their selective love of a single interaction. To synthesize these romantic polymer coatings, two main methods have been reported: 1) “grafting-from” where the polymer is grown from the surface, producing a very dense coating, and 2) “grafting-to” where the polymer is synthesized in solution, and then immobilized onto the material surface, which produces coatings of lower density. For antifouling polymer coatings to be as effective as possible, polymers should be tethered densely on the material surface, but to maximize the loading of capture agents, polymer density must be lower to allow for grafting within the layer. Further, the grafting-from method is typically more synthetically challenging hindering commercialization. To improve the selective bioactivity of graft-to and graft-from coatings as well as antifouling properties of graft-to coatings, we present two methods to improve the specific bioactivity of anti-fouling polymer coatings and the first description of Graft-then-Shrink, a method to enhance the antifouling properties of graft-to coatings for medical implants and label-free in vitro sensors. For graft-from coatings, we produced a hierarchical romantic surface that consists of two polymer layers, the lower of which is dense and antifouling, and the upper of which is low-density and can accommodate high-levels of bioactive agents, resulting in a best of both worlds; the density of the layers is controlled by a novel pH controlled polymerization procedure. A method to improve the less labor intensive “grafting-to” strategy was then devised, called “Graft-then-Shrink” where the antifouling polymers are grafted onto a shrinkable material, and then the material is shrunk, leading to an increase in grafted polymer content over grafting-to alone. This method was successfully applied to a heat shrinkable material and an elastomeric silicone material, a common material for medical devices, for improved antifouling properties. Finally, a method for combining the Graft-then-Shrink technique iv with a novel localized surface plasmon resonance (LSPR) biosensor was found, that provides a simple route to access romantic surfaces on high-sensitivity, easy to fabricate LSPR biosensors. Together, these fabrication methods will simplify and expedite the translation of antifouling and romantic surfaces for medical devices and sensors.

Interpenetrating polymer networks (IPN’s) consist of two overlapping cross-linked networks that are not bonded to each other. Hydrogel IPN’s are of application interest due to properties such as mechanical reinforcement, modulated drug release and biodegradation kinetics, dual polymer activities in vivo, and novel nanostructured morphologies. Prior IPN hydrogels reported in the literature either required surgical implantation (disadvantageous for several reasons) or were polymerized in situ (limited to a small subset of biologically safe chemistries). Alternatively, we formed IPN’s using a mixing injector to deliver orthogonally reactive functionalized prepolymer solutions that gel upon contact. Specifically, we use hydrazone chemistry to gel a thermosensitive poly(N-isopropylacrylamide) (PNIPAM) network and kinetically orthogonal thiosuccinimide or disulfide chemistry to cross-link a second network of hydrophilic poly(vinylpyrrolidone) (PVP). The resulting IPN’s preserve the thermoresponsive properties of the PNIPAM constituent but exhibit slower, smaller, and more reversible transitions due to entanglement with the highly hydrophilic PVP network (potentially useful to reduce the problem of burst release in thermoresponsive drug delivery systems). Mechanical reinforcement was evidenced by the increased shear storage modulus of IPN composites relative to the sum of the individual component moduli, particularly so in IPN’s employing the thiosuccinimide-cross-linked PVP. The nanostructure of the IPN hydrogels was further studied using small angle neutron scattering with contrast matching, and was found to combine features characteristic to each single network component (PNIPAM-rich static domains embedded in PVP-rich fractal clusters). However, our results suggest some slight changes to their scattering profiles, indicative of partial mixing or influence of each network structure upon the other. Corroborating investigations with single-molecule super-resolution fluorescence microscopy, operating at a slightly larger length scale, show the formation of separate populations of mixed and individual domains or clusters of each polymer type. These properties suggest such injectable IPN’s for further investigation as prospective biomaterials. / Thesis / Doctor of Philosophy (PhD) / This thesis describes the development of overlapping but unconnected polymer networks formed by mixing of completely injectable polymer precursors. The interlocking pair of networks is based on one component that shrinks upon heating and the other component that offers the potential for biological adhesion. Entanglement between the two components renders them mutually reinforcing and changes the shrinking and reswelling behaviour of the temperature-responsive component. The structure of the composite network is also distinctive from either individual component, forming alternating, unevenly mixed regions richer in one or the other component. The composite’s properties are attractive for a potential bioadhesive drug delivery carrier and, in the future, a possible wound closure biomaterial.

Cardiovascular diseases (CVD) are the leading cause of death around the world, being responsible for 31.8% of all deaths in 2017. The leading cause of CVD is Ischemic heart disease (IHD), which caused 8.1 million deaths in 2013. IHD occurs when coronary arteries in the heart are narrowed or blocked, preventing the flow of oxygen and blood into the cardiac muscle, which could provoke acute myocardial infarction (AMI) and ultimately lead to heart failure and death. Cardiac regenerative therapy aims to repair and refunctionalize damaged heart tissue through the application of (1) intramyocardial cell delivery, (2) epicardial cardiac patch, and (3) acellular biomaterials. These approaches have provided benefit of cell localization and tissue structure respectively. However, to improve cell retention and integration, there is a need for the intramyocardial delivery of functional tissues while preserving anisotropic muscle alignment. Here, we developed a biodegradable z-wire scaffold that supports the scalable gel-free production of an array of functional cardiac tissues in a 384-well plate format. The z-wire scaffold design supports cellular alignment, provides tunable mechanical support, and allows for hallmark tissue contraction. When the scaffold is imparted with magnetic properties, individual tissues can be assembled with macroscopic alignment under magnetic guidance. When used in combination with a customized surgical delivery tool, z-wire tissues can be injected directly into the myocardial wall, with controlled tissue orientation according to the injection path. This modular tissue engineering approach, in combination with the use of smart scaffolds, could expand opportunity in functional tissue delivery. / Thesis / Master of Science in Chemical Engineering (MSChE)

No / Advanced Dental Biomaterials is an invaluable reference for researchers and clinicians within the biomedical industry and academia. The book can be used by both an experienced researcher/clinician learning about other biomaterials or applications that may be applicable to their current research or as a guide for a new entrant into the field who needs to gain an understanding of the primary challenges, opportunities, most relevant biomaterials, and key applications in dentistry.

Gelatin methacrylate (GelMA) is a ubiquitous biocompatible photopolymer used in tissue engineering and regenerative medicine due to its cost-effective synthesis, tunable mechanical properties, and cellular response. Biotechnology applications utilizing GelMA have ranged from developing cell-laden hydrogel networks to cell encapsulation and additive manufacturing (3D printing). However, extrusion based 3D printing is the most common technique used with GelMA. Mask projection microstereolithography (MPµSL or µSL) is an advanced 3D printing technique that can produce geometries with high resolution, high complexity, and feature sizes unlike extrusion based printing. There are few biomaterials available for µSL applications, so 3D printing GelMA using µSL would not only add to the repertoire materials, but also demonstrate the advantages of µSL over other 3D printing techniques. A novel GelMA resin was tested with µSL to create a porous scaffold with a height and print time that has not been displayed in the literature before for a scaffold of this size. The resin consists of GelMA, deionized water, lithium phenyl-2,4,6-trimethylbenzoylphosphinate (LAP, photoinitiator), and 2-Hydroxy-4-methoxybenzophenone-5-sulfonic acid (sulisobenzone, UV blocker) and can be processed at room temperature. Four resins were tested (w/w %) and characterized for µSL printing: 20% GelMA 0.5% UV blocker, 20% GelMA 1.0% UV blocker, 30% GelMA 0.5% UV Blocker, and 30% GelMA 1.0% UV blocker. Swell testing, working curve, photo-rheology, photo-DSC (dynamic scanning calorimetry), 3D printing, and cell culture tests were performed and results showed that 30% GelMA 1.0% UV blocker had the best 3D print fidelity among resin compositions. / Master of Science / Three dimensional (3D) printing is a widely used technology to rapidly produce structures with varying degrees of complexity. 3D printing of biological components is of interest because as the world population increases, there is a lack of donors available to compensate for organ loss and tissue replacement. 3D printing offers a solution to great custom scaffolds and structures that mimic physiological geometry and properties. One printing technique is known as microstereolithography, or µSL, which uses a projector-like system to pattern ultraviolet (UV) light in specific arrangements to generate complex geometries and 3D parts. Gelatin is a material of interest for this technology because gelatin is derived from collagen, which is the most abundant protein found in the body. Gelatin can be modified so that it is reactive with UV light, and can be processed with µSL to generate 3D structures. In this work, gelatin was modified into the form of gelatin methacrylate (GelMA) in order to develop and test resin formulations for use with µSL. Four different resins were tested and characterized and the results indicated that one GelMA resin produced prints with greater fidelity and resolution than other formulations. This resin has been identified for potential applications in tissue engineering and 3D printed organ development.

The inherent design freedom of protein engineering and recombinant protein production enables specific tailoring of protein structure, function, and properties. Two areas of research where protein engineering has allowed for many advances in biomedical materials include the design of novel protein scaffolds for molecular recognition, as well as the use of recombinant proteins for production of next generation biomaterials. The main focus of my dissertation was to develop new biomedical materials using protein engineering. Chapters three and four discuss the engineering of repeat proteins as bio-recognition modules for biomedical sensing and imaging. Chapter three provides an overview of the most recent advances in engineering of repeat proteins in the aforementioned field. Chapter four discusses my contribution to this field. We have designed a de novo repeat protein scaffold based on the consensus sequence of the leucine rich repeat (LRR) domain of the NOD family of cytoplasmic innate immune system receptors. Innate immunity receptors have been described as pattern recognition receptors in that they recognize "global features" of a family of pathogens versus one specific antigen. In mammals, two main protein families of such receptors are: extracellular Toll-like receptors (TLRs) and cytoplasmic Nucletide-binding domain- and Leucine-rich Repeat-containing proteins (NLRs). NLRs are defined by their tripartite domain architecture that contains a C-terminal LRR (Leucine Rich Repeat) domain, the nucleotide-binding oligomerization (NACHT) domain, and the N-terminal effector domain. It is proposed that pathogen sensing in NLRs occurs through ligand binding by the LRR domain. Thus, we hypothesized that LRRs would be suitable for the design of alternative binding scaffolds for use in molecular recognition. The NOD protein family plays a very important role in innate immunity, and consequently serves as a promising scaffold for design of novel recognition motifs. However, engineering of de novo proteins based on the NOD family LRR domain has proven challenging due to problems arising from protein solubility and stability. Consensus sequence design is a protein design tool used to create novel proteins that capture sequence-structure relationships and interactions present in nature in order to create a stable protein scaffold. We implement a consensus sequence design approach to develop proteins based on the LRR domain of NLRs. Using a multiple sequence alignment we analyzed all individual LRRs found in mammalian NLRs. This design resulted in a consensus sequence protein containing two internal repeats and separate N- and C- capping repeats named CLRR2. Using biophysical characterization methods of size exclusion chromatography, circular dichroism, and fluorescence, CLRR2 was found to be a stable, monomeric, and cysteine free scaffold. Additionally, CLRR2, without any affinity maturation, displayed micromolar binding affinity for muramyl dipeptide (MDP), a bacterial cell wall fragment. To our knowledge, this is the first report of direct interaction of a NOD LRR with a physiologically relevant ligand. Furthermore, CLRR2 demonstrated selective recognition to the biologically active stereoisomer of MDP. Results of this study indicate that LRRs are indeed a useful scaffold for development of specific and selective proteins for molecular recognition, creating much potential for future engineering of alternative protein scaffolds for biomedical applications. My second research interest focused on the development of proteins for novel biomaterials. In the past two decades, keratin biomaterials have shown impressive results as scaffolds for tissue engineering, wound healing, and nerve regeneration. In addition to its intrinsic biocompatibility, keratin interacts with specific cell receptors eliciting beneficial biochemical cues, as well as participates in important regulatory functions such as cell migration and proliferation and protein signalling. The aforementioned properties along with keratins' inherent capacity for self-assembly poise it as a promising scaffold for regenerative medicine and tissue engineering applications. However, due to the extraction process used to obtain natural keratin proteins from natural sources, protein damage and formation of by-products that alter network self-assembly and bioactivity often occur as a result of the extensive processing conditions required. Furthermore, natural keratins require exogenous chemistry in order to modify their properties, which greatly limits sequence tunability. Recombinant keratin proteins have the potential to overcome the limitations associated with the use of natural keratins while also maintaining their desired structural and chemical characteristics. Thus, we have used recombinant DNA technology for the production of human hair keratins, keratin 31 (K31) and keratin 81 (K81). The production of recombinant human hair keratins resulted in isolated proteins of the correct sequence and molecular weight determined by sodium dodecyl sulfate polyacrylamide gel electrophoresis and mass spectrometry. Proteins with no unwanted sequence truncations, deletions, or mutations indicate recombinant DNA technology can be used to reliably generate full length keratin proteins. This allows for consistent starting materials with no observable impurities or undesired by-products, which combats a major challenge associated with natural keratins. Additionally, recombinant keratins must maintain the intrinsic propensity for self-assembly found in natural keratins. To test the propensity for self-assembly, we implemented size exclusion chromatography (SEC), dynamic light scattering (DLS), and transmission electron microscopy (TEM) to characterize K31, K81, and an equimolar mixture of K31 and K81. The results of the recombinant protein characterization reveal novel homo-polymerization of K31 and K81, not previously reported, and formation of characteristic keratin fibers for the K31 and K81 mixture. Therefore, recombinant K31 and K81 retain the intrinsic biological activity (i.e. self-assembly) of natural keratin proteins. We have also conducted a comparative study of recombinant and extracted heteropolymer K31/K81. Through solution characterization and TEM analysis it was found that use of the recombinant heteropolymer allows for increased purity of starting material while also maintaining self-assembly properties necessary for functional use in biomaterials design. However, under the processing condition implemented, extracted keratins demonstrated increased efficiency of assembly. Through each study we conclude that recombinant keratin proteins provide a promising solution to overcome the challenges associated with natural protein materials and present an exceptional design platform for generation of new biomaterials for regenerative medicine and tissue engineering. / Ph. D.

Supramolecular, or non-covalent, interactions remain a hallmark of biological systems, dictating biologic activity from the structure of DNA to protein folding and cell-substrate interactions. Harnessing the power of supramolecular interactions commonly experienced in biological systems provides numerous functionalities for modifying synthetic materials. Hydrogen bonding, ionic interactions, and metal-ligand interactions highlight the supramolecular interactions examined in this work. Their broad utility in the fields of nanoparticle formulations, polymer chemistry, and additive manufacturing facilitated the generation of numerous biological materials. Metal-ligand interactions facilitated carbon nanohorn functionalization with quantum dots through the zinc-sulfur interaction. The incorporation of platinum-based chemotherapeutic cisplatin generated a theranostic nanohorn capable of real-time imaging and drug delivery concurrent with photothermal therapies. These nanoparticles remain non-toxic without chemotherapy, providing patient-specific. Furthermore, metal-ligand interactions proved vital to retaining quantum dots on nanoparticle surfaces for up to three days, both limiting their toxicity and enhancing their imaging potential. Controlled release of biologics remain highly sought-after, as they remain widely regarded as next-generation therapeutics for a number of diseases. Geometry-controlled release afforded by additive manufacturing advances next-generation drug delivery solutions. Poly(ether ester) ionomers composed of sulfonated isophthalate and poly(ethylene glycol) provided polymers well suited for low-temperature material extrusion additive manufacturing. Ionic interactions featured in the development of these ionomers and proved vital to their ultimate success to print from filament. Contrary to ionic interactions, hydrogen bonding ureas coupled poly(ethylene glycol) segments and provided superior mechanical properties compared to ionic interactions. Furthermore, the urea bond linking together poly(ethylene glycol) chains proved fully degradable over the course of one month in solution with urease. The strength of these supramolecular interactions demanded further examination in the photopolymerization of monofunctional monomers to create free-standing films. Furthermore, the incorporation of both hydrogen bonding acrylamides and ionic groups provided faster polymerization times and higher moduli films upon light irradiation. Vat photopolymerization additive manufacturing generated 3-dimensional parts from monofunctional monomers. These soluble parts created from additive manufacturing provide future scaffolds for controlled release applications. Controlled release, whether a biologic or chemotherapeutic, remains a vital portion of the biomedical sciences and supramolecular interactions provides the future of materials for these applications. / Ph. D.

Bio-based materials are a viable alternative to synthetic materials for tissue engineering. Although many bio-based materials have been used, Ovalbumin (OA) has not yet been researched to create 3D structures that promote cellular responses. Micro-porous scaffolds are a promising construct for bone tissue regeneration; therefore OA crosslinked with three different concentrations (10%, 15% and 20%) of glutaraldehyde (GA) was used in this research. After fabrication, a porous morphology was observed using SEM. Average pore sizes were found to be comparable to scaffolds previously shown to promote cellular response. A TNBS assay determined percent crosslinking in the scaffolds, however there was no significant difference in percent crosslinking despite differing GA concentrations used. Possible explanations include an excess of GA was used. Using DSC, a glass transition temperature (Tg) was found for control indicating the scaffolds are amorphous. Average dry and wet compressive strengths were also found. As expected, differing GA concentrations had no significant effect on Tg and average compressive strengths due to an excess used. Scaffolds were mechanically tested at 37°C with no significant difference found; therefore these scaffolds can be used in the body. It was shown through cell studies that MC3T3-E1 pre-osteoblast cells significantly increased in number on the 10% and 15% scaffolds, therefore cell proliferation occurred. Because of a positive cellular response, 10% GA scaffolds were used for differentiation studies that showed an increase in osteocalcin at 21 days and alkaline phosphatase levels for scaffolds cultured for 14 days. Overall OA scaffolds have shown to be a promising 3D construct for bone tissue regeneration. / Master of Science