Synthesis and evaluation of catalytic performances of novel bifunctional 2- aminoDMAP-Thiourea/ Sulfonamide/ Squaramide organocatalysts derived from trans-(R,R)-cyclohexane-1,2-diamine forms the main goal of this thesis. For this purpose, direct selective mono-N-pyridilization of trans-(R,R)-cyclohexane-1,2- diamine via Pd and Cu catalysis is described successfully first. Facile preparation of chiral 2-aminoDMAP core catalaphore led to the development of various 2- aminoDMAP- Thiourea/ Sulfonamides/ Squaramides as bifunctional acid/base organocatalyst libraries (most in two-steps overall) which showed good results in asymmetric conjugate addition of 1,3-dicarbonyls to trans-(&beta / )-nitrostyrene. Enantiomeric excesses (ee) up to 93% were attained.

In asymmetric catalysis, interactions between multiple molecules of catalyst can be important for achieving high catalyst activity and stereoselectivity. In Chapter 1 of this thesis, we introduce catalyst-catalyst interactions in the context of the classic Kagan nonlinear effect (NLE) experiment, and present examples of the strengths and drawbacks of the NLE experiment. For the remainder of the thesis, we explore catalyst-catalyst interactions in the context of two different reactions. First, in Chapter 2, we apply a combination of reaction kinetics and computational chemistry to a reaction that is well known to require the cooperative action of two molecules of catalyst: the (salen)Co(III)-catalyzed hydrolytic kinetic resolution (HKR) of terminal epoxides. In our investigation, we demonstrate that stereoselectivity in the HKR is achieved through catalyst-catalyst interactions and provide a model for how high selectivity and broad substrate scope are achieved in this reaction. In Chapter 3, we focus our attention on the thiourea-catalyzed enantioselective alkylation of alpha-chloroethers with silyl ketene acetal nucleophiles, a reaction that was not known to require the cooperative action of two molecules of catalyst at the outset of our investigation. By using a wide range of physical organic chemistry tools, we established that the resting state of the optimal thiourea catalyst is dimeric under typical reaction conditions, and that two molecules of catalyst work cooperatively to activate the alpha-chloroether electrophile. The implications of this mechanism for catalyst design are discussed. / Chemistry and Chemical Biology

This thesis is focused on two main areas of organic synthesis, palladium-catalyzed functionalization of alkenes and allylic alcohols, as well as development of new allylboration reactions. We have developed a palladium-catalyzed selective allylic trifluoroacetoxylation reaction based on C−H functionalization. Allylic trifluoroacetates were synthesized from functionalized olefins under oxidative conditions. The reactions proceed under mild conditions with a high level of diastereoselectivity. Mechanistic studies of the allylic C−H trifluoroacetoxylation indicate that the reaction proceeds via (η3-allyl)palladium(IV) intermediate. Palladium-catalyzed regio- and stereoselective synthesis of allylboronic acids from allylic alcohols has been demonstrated. Diboronic acid B2(OH)4 was used as the boron source in this process. The reactivity of the allylboronic acids were studied in three types of allylboration reactions: allylboration of ketones, imines and acyl hydrazones. All three processes are conducted under mild conditions without any additives. The reactions proceeded with remarkably high regio- and stereoselectivity. An asymmetric version of the allylboration of ketones was also developed. In this process chiral BINOL derivatives were used as catalysts. The reaction using γ-disubstituted allylboronic acids and various aromatic and aliphatic ketones afforded homoallylic alcohols bearing two adjacent quaternary stereocenters with excellent regio-, diastereo- and enantioselectivity (up to 97:3 er) in high yield. The stereoselectivity in the allylboration reactions could be rationalized on the basis of the Zimmerman-Traxler TS model.

The research in this dissertation examines the chemistry and applications of dendrimers in homogeneous catalysis. We examined interactions between dendrimers and charged probe molecules, prepared dendrimer-encapsulated metal nanoparticles in organic solvents, studied size-selectivity of dendrimer-encapsulted catalysts, and designed molecular rulers as in-situ probes to measure the location of dendrimer-encapsulted metal nanoparticles. The intrinsic proton binding constant and a constant that characterizes the strength of electrostatic interactions among occupied binding sites in poly(amidoamine) (PAMAM) dendrimers have been obtained by studying the effect of solution pH on the protonation of the dendrimers. The significant finding is that these two factors are greatly modulated by the unique and hydrophobic microenvironment in the dendrimer interior. Hydrophilic poly(propylene imine) (PPI) dendrimers were modified with various hydrophobic alkyl chains through an amide linkage and were then used as templates for preparing intradendrimer copper nanoclusters. The main driving force for encapsulating metal-ions was found to be the differences in metal-ion solubility between the solvent and the interior of the dendrimer. Nanometer-sized metal particles are synthesized and encapsulated into the interior of dendrimers by first mixing together the dendrimer and metal ion solution and then reducing the composite chemically, and the resulting dendrimer-encapsulated metal nanoparticles can then be used as catalysts. By controlling the packing density on the dendrimer periphery using either different dendrimer generations or dendrimer surface functionalities, it is possible to control access of substrates to the encapsulated catalytic nanoparticle. Molecular rulers consisting of a large molecular "stopper", a reactive probe and a linker were designed as in-situ probes for determining the average distance between the surface of dendrimer-encapsulated palladium nanoparticles and the periphery of their fourth-generation, hydroxyl-terminated PAMAM dendrimer hosts. By doing so, we avoid having to make assumptions about the nanoparticle size and shape. The results suggest that the surface of the encapsulated nanoparticle is situated 0.7 ± 0.2 nm from the surface of the dendrimer.

The synthesis and characterization of a series of chiral indium complexes bearing a tridentate NNO ligand are reported. The ligand 2-[[[(dimethylamino)cyclohexyl]amino]methyl]- 4,6-bis(tert-butyl) phenol (H₂NNO) was synthesized via a previously published procedure and bound to indium by both a protonolysis and salt metathesis route. A dimethylated indium complex (NNO)InMe₂ (1) was isolated by reaction of InMe₃ with H₂NNO. A one-pot saltmetathesis route was used to produce a unique mixed-bridge dinuclear indium complex [(NNO)InCl] ₂(μ-OEt)(μ-Cl) (3) from a mixture of indium trichloride, potassium ethoxide and the monopotassiated salt of the ligand, KH(NNO). Direct reaction of KH(NNO) and indium trichloride resulted in the formation of (NNO)InCl₂ (4) which was carried forward to 3 by reaction with sodium ethoxide. The complex 3 is active for the ROP of β-butyrolactone ε-caprolactone and lactide and is the first reported indium-based catalyst for lactide or β-butyrolactone ROP. Kinetic studies of 3 for ROP of LA revealed that catalyst was well-behaved, and that the rate was first order with regard to lactide and catalyst. The enthalpy and entropy of activation for the ROP were experimentally determined. Polymer produced by ROP by 3 has narrow molecular weight distribution and a good correlation is seen between the observed moleular weight and monomer loading. A mechanism was proposed for 3 acting as a catalyst for the ROP of lactide; however further experiments are required to confirm this mechanism. Polymer samples isolated from the ROP of rac-lactide by rac-3 show isotactic enrichment. It is postulated that the chiral catalyst 3 is exerting stereocontrol via an enantiomorphic site control mechanism.

In this work we study mixtures of cationic surfactant (CTAB) and sugar based surfactant(s) (octyl beta-D-glucopyranoside (C8G1), dodecyl maltoside (C12G2) and octyl beta-D-xylopyranoside (C8X1)) to understand the non-ideal thermodynamic behavior of the mixtures of cationic and non-ionic surfactants in water and synthesis of imprinted materials. The thermodynamics of micellization, mixing and dilution of these systems are studied using Isothermal Titration Calorimetry (ITC) and the experimental data obtained are modeled with a pseudo-phase separation model with non-ideal mixing described by regular solution theory. It is shown that a model accounting for enthalpy of demicellization and enthalpy of dilution based on McMillan-Mayer model is able to fit ITC data set for CTAB-C8G1 system with varying mole fractions. In addition to measuring non-ideal mixing behavior, mixtures of cationic and saccharide-based surfactants are of interest for the molecular imprinting of oxide materials. Mixtures of CTAB and either C8G1 or C8X1 are utilized to prepare nonporous adsorbent materials which act as selective adsorbents towards the headgroup of the saccharide surfactant. The approach is based on the Stöber silica particle synthesis process in which surfactants are added to soft particles present at the onset of turbidity to imprint their surface. This approach is shown to yield particles displaying selective adsorption for sugars with different number of carbons, but also provide enantioselective adsorption of targeted saccharides. Enantioselectivity of D-glucose, D-xylose and D-maltose is demonstrated by imprinting with C8G1, C8X1 and C12G2, respectively. The imprinting technique provides the first example of selective adsorption based on non-covalent imprinting of silica for sugars. The mixed surfactant are also used to synthesize templated porous materials incorporating titanium which are used for epoxidation catalysis. The porous materials obtained have high surface area, uniform pore sizes in the mesopore range, and provided high selectivity and activity towards epoxidation of styrene. Titanosilicate thin films are also synthesized using cationic and saccharide surfactant mixtures to understand the incorporation of the titanium into the porous material. It is demonstrated that large amounts of isolated, tetracoordinated titanium sites can be incorporated into mesoporous silica-based materials via the complexation of the titanium precursor with a saccharide-based surfactant.

While considerable progress has been made towards understanding the effect that membrane-based layer-by-layer (LbL) immobilizations have on the activity and stability of enzymatic catalysis, detailed work is required in order to fundamentally quantify and optimize the functionalization and operating conditions that define these properties. This work aims to probe deeper into the nature of transport mechanisms by use of pressure-induced, flow-driven enzymatic catalysis of LbL-functionalized hydrophilized poly(vinyldiene) (PVDF)-poly(acrylic acid) (PAA)-poly(allylamine hydrochloride) (PAH)-glucose oxidase (GOx) membranes. These membranes were coupled in a sealed series following cellulose acetate (CA) membranes for the elimination of product accumulation within the feed-side solution during operation. At pH = 6 and T = 21oC, the enzymatic catalysis of LbL-immobilized GOx from Aspergillus niger performed remarkably well in comparison to the homogeneous-phase catalysis within an analogous aqueous solution. On average, the enzymatic turnover was 0.0123 and 0.0076 mmol/(mg-GOx)(min) for the homogeneous-phase catalysis and the LbL-immobilized catalysis, respectively. Multiple consecutive permeations resulted in replicable observed kinetic results with R2 > 0.95. Permeations taking place over the course of a three week trial period resulted in a retention of >90% normalized activity when membranes were removed when not in use and stored at -20oC, whereas the homogenous-phase kinetics dropped below 90% normalized activity in under one day.

For the study of homogeneous catalytic reaction mechanisms, the ideal technique would be capable of identifying and measuring in real time the abundances of all components of the reaction mixture, including reactants, products, byproducts, intermediates, and catalyst resting states. This thesis details the development of methodologies designed to transform electrospray ionization mass spectrometry into just such a tool. Species of interests must be charged otherwise invisible in ESI-MS. Therefore, charge-tagged aryl iodide ([4-I-C6H4CH2PPh3]+[Br]-) and a terminal alkyne ([para-(HCC)C6H4CH2PPh3]+[Br]-) were synthesized as the ESI-active substrates for the homogeneous catalysis study. A method named PSI (pressurized sample infusion) was developed to introduce the air and moisture sensitive reaction mixtures to the ESI-MS. The analytical aspects of the method were investigated and optimized. Applicability of the technique was demonstrated through several organic and organometallic mechanism investigations. The above developments were employed to the detailed study of the copper-free Sonogashira (Heck alkynylation) reaction and the hydrodehalogenation of the charged-tag aryl iodide. Simultaneous monitoring of the charged substrate, products and intermediates in the copper-free Sonogashira reaction by PSI-ESI-MS provided rich information about the kinetic and mechanism of this reaction. Kinetic isotope effect study shows a remarkable inverse kinetic isotope effect which is completely unexpected. Numerical models were constructed to simulate the mechanistic observation and to extract the rate constant of each step in the proposed mechanism cycle. The same methodology (PSI technique) was used to the study of the hydrodehalogenation reaction. Key intermediates were detected under the typical reaction conditions. Kinetic isotope effect study was performed in CH3OD and CD3OD. A primary KIE was observed in both deuterated solvents. A revised mechanism cycle was suggested for this reaction based on KIE results, numerical modelling and other experiments. In the proposed cycle deprotonation of methanol occurs on the palladium metal centre instead of the conventional in solution deprotonation (off metal deprotonation). The mechanism of the ligand substitution of charged-tag of a palladium aryl iodide [Pd(TMEDA)(Ar)(I)]+ (Ar = [C6H4CH2PPh3]+[PF6]-) complex against PPh3 was studied in methanol by PSI-ESI-MS. Results revealed that the pathway proceeds quite differently to what had been assumed by others; there was a very fast displacement of [I]– by PPh3 to form [Pd(TMEDA)(Ar)(PPh3)]2+ , followed by a much slower displacement of TMEDA and recoordination of [I]– to form the product [Pd(PPh3)2ArI]+. We successfully integrated UV/Vis spectroscopy, as a complementary method with ESI-MS to shed light into the systems where ESI-MS only is unable to provide a full assignment to homogenous catalysis. The combination of the two fast and sensitive techniques provides a unique opportunity to study the composition of the organometallic reaction mixtures over time. / Graduate / 0486 / zohrabahmadi@gmail.com

The synthesis and characterization of a series of chiral indium complexes bearing a tridentate NNO ligand are reported. The ligand 2-[[[(dimethylamino)cyclohexyl]amino]methyl]- 4,6-bis(tert-butyl) phenol (H₂NNO) was synthesized via a previously published procedure and bound to indium by both a protonolysis and salt metathesis route. A dimethylated indium complex (NNO)InMe₂ (1) was isolated by reaction of InMe₃ with H₂NNO. A one-pot saltmetathesis route was used to produce a unique mixed-bridge dinuclear indium complex [(NNO)InCl] ₂(μ-OEt)(μ-Cl) (3) from a mixture of indium trichloride, potassium ethoxide and the monopotassiated salt of the ligand, KH(NNO). Direct reaction of KH(NNO) and indium trichloride resulted in the formation of (NNO)InCl₂ (4) which was carried forward to 3 by reaction with sodium ethoxide. The complex 3 is active for the ROP of β-butyrolactone ε-caprolactone and lactide and is the first reported indium-based catalyst for lactide or β-butyrolactone ROP. Kinetic studies of 3 for ROP of LA revealed that catalyst was well-behaved, and that the rate was first order with regard to lactide and catalyst. The enthalpy and entropy of activation for the ROP were experimentally determined. Polymer produced by ROP by 3 has narrow molecular weight distribution and a good correlation is seen between the observed moleular weight and monomer loading. A mechanism was proposed for 3 acting as a catalyst for the ROP of lactide; however further experiments are required to confirm this mechanism. Polymer samples isolated from the ROP of rac-lactide by rac-3 show isotactic enrichment. It is postulated that the chiral catalyst 3 is exerting stereocontrol via an enantiomorphic site control mechanism.

Due to the prevalence of porphyrins and their derivatives in Nature, there is a wide interest in the synthesis, design and exploitation of their properties. Their electron delocalisation, and the ease with which the electronic system can be perturbed and manipulated, have meant that porphyrins have been investigated for applications in many avenues. Conjugated, multiporphyrin oligomers have been studied as light-harvesting system mimics, molecular wires and sensors. It has been predicted that the azo-linkage should enable superior porphyrin-to-porphyrin interaction. Preparation of an azo-linked bis(porphyrin) was approached by reacting protected hydrazines with bromoporphyrins. A series of mono- and bis-substituted porphyrinoids including novel diiminoporphodimethenes was synthesised using palladium-catalysed reactions, and spectroscopic, structural and redox properties of these products were investigated. The manner in which a bis-substituted product evolved from a mono-activated starting material was studied. The synthesis of these products was refined to produce each product selectively. These products display interesting redox properties, and several of them exhibit greatly red-shifted absorption spectra. The palladium-catalysed synthesis of primary and secondary aminoporphyrins, as well as a hydroxyporphyrin, from the reaction of bromoporphyrins with unsubstituted hydrazine was discovered and investigated. The synthesis of these products was optimised to yield each novel porphyrinoid selectively. Some of the electronic and structural properties of these products were studied, and the unique bis(porphyrin)secondary amine exhibited excitonic coupling between the macrocycles. A porphyrin dyad with an azo-linkage was isolated, and its synthesis was optimised, initially using palladium-catalysed homocoupling of aminoporphyrins, and then using copper catalysis. The synthesis of this "azoporphyrin" was optimised to obtain the desired dimers in high yields and the properties of these dimers were studied and contrasted with those of other conjugated porphyrin dimers. The absorption spectra exhibited greatly split Soret bands and intense, red-shifted Q-bands, while cyclic voltammetry showed a decrease in the HOMO-LUMO gap, indicative of extremely efficient porphyrin-porphyrin interaction. Two crystal structures of azoporphyrins were obtained, and the dihedral angle and the distance between the mean planes of the macrocycles were also significantly smaller than those found for the analogous (E)-ethene-linked dimers. A series of novel "head-to-tail" porphyrin dyads was also isolated and characterised, and these exhibited interesting spectral features, including very broad and red-shifted Q-bands and split Soret bands in their absorption spectra.