The regulated control of pollutants is essential to maintaining good air quality in urban areas. A major concern is the formation of tropospheric ozone, which can be especially harmful to those with lung conditions and has been linked to the occurrence of asthma. Ozone is formed through reactions of oxidized volatile organic compounds with nitrogen oxides, and the accurate modeling of the process is necessary for smart and effective regulations. Ambient measurements are important to understanding the mechanisms involved in tropospheric chemistry. This dissertation describes the characterization of a novel instrument for the ambient measurement of dinitrogen pentoxide, N2O5, and the results of several field studies. This is an important intermediate in the major nighttime loss pathway of nitrogen oxides. The understanding of this process requires correct modeling formation, as any nitrogen oxides not removed at night will result in increased ozone formation at sunrise. Calibration studies have been performed in order to quantify the loss of reactive species within the instrument, and the sampling flow and N2O5 detection have been well characterized. The results of the laboratory measurements are presented. Results are presented from the SHARP Field Study in Houston, TX in the spring of 2009. N2O5 measurements are compared to measurements of other species, including nitric acid and nitryl chloride, which were performed by other research groups. Mixing ratios exceeding 300 ppt were observed following ozone exceedance days, and a dependence of the concentration on both wind speed and direction was noticed. There was a strong correlation determined between N2O5 with HNO3 and ClNO2 indicating both a fast heterogeneous hydrolysis and N2O5 as the primary source of the species. Observed atmospheric lifetimes for N2O5 were short, ranging from several seconds to several minutes. We have also investigated the presence of N2O5 in College Station, TX. Low mixing ratios peaking at approximately 20 ppt were observed, with longer atmospheric lifetimes of up to several hours. The role of biogenic emissions in the NO3-N2O5 equilibrium is discussed.

Development of effective pollution control strategies for urban areas requires accurate predictive models. The ability of models to correctly characterize the atmospheric chemistry, meteorology, and deposition rely on accurate data measurements, both as input and verification of output. Therefore, the measurement techniques must be sensitive, accurate, and capable of resolving the spatial and temporal variations of key chemical species. The application of a sensitive in situ optical absorption technique, known as cavity ring-down spectroscopy, will be introduced for simultaneously measuring the nitrate radical and dinitrogen pentoxide. The cavity ring-down spectrometer was initially designed and constructed based on the experiments by Steven Brown and Akkihebal Ravishankara at the National Oceanic and Atmospheric Administration. The instrument design has since undergone many revisions before attaining the current instrumentation system. Laboratory observations provide verification of accurate N2O5 and NO3 detection with measurements of the nitrate radical absorption spectrum centered at 662 nm, effective chemical zeroing with nitric oxide, and efficient thermal decomposition of N2O5. Field observations at a local park provided further confirmation of the instruments capability in measuring N2O5 and NO3. However, detection limits were too high to detect ambient NO3. Effective and frequent zeroing can easily improve upon the sensitivity of the instrument. Determination of the source of the polluted air masses detected during these studies was unknown since the typical southerly winds from Houston were not observed. Since deployment in the field, instrumentation modifications and laboratory measurements are underway for preparation of the SOOT campaign in Houston, Texas starting April 15, 2009. Current modifications include automation of the titration with a solenoid valve and an automated filter changer. Wall losses and filter transmission for NO3 and N2O5 will be determined through laboratory measurements in coincidence with and ion-drift chemical ionization mass spectrometer prior to the SOOT project. Potential modifications to improve upon the instrument are suggested for future endeavors.

Investigation of aerosol chemistry and growth under atmospheric conditions in a novel rotating aerosol suspension chamber with cavity ring-down spectroscopy provided key insight into the effect of pollutants and other vapors on the overall atmospheric lifetime of particulate matter. The Atmospheric Cloud Simulation Instrument (ACSI) creates a well-defined and controllable atmosphere of suspended particles, analyte gases, and background gas molecules, which remains stable up to several days. Preliminary studies have shown that monodisperse polystyrene latex (dp = 0.994 µm) and polydisperse ammonium sulfate (CMD dp = 100 nm) particles remain suspended for at least 22 hours while the chamber rotates at 2 RPM. Further investigation into the aerosol dynamics showed the coagulation efficiency of high concentration particle suspensions (>10^6 particles/cm3) depends on particle phase state and composition. The coagulation efficiency decreased with increased humidity in the model atmosphere and with increased ion concentrations in the aerosols. The decrease in efficiency is attributed to repulsive forces from like-charges on the particle surfaces. In addition to humidity, the spectroscopy integrated into the main chamber monitors the real-time response to a perturbation in the model atmosphere, such as the introduction of a gas-phase reactant. Cavity ring-down spectroscopy, performed in situ along the center axis, records mid-infrared spectra (1010 cm-1 to 860 cm-1) to identify gas species evolved from gas-particle heterogeneous chemistry. In accord with previous studies, my results show that a known reaction between monomethyl amine and ammonia occurs readily on suspended ammonium sulfate particles in >50% RH and the extent of the reaction depends on the humidity of the model atmosphere. Acidic ammonium bisulfate aerosols also produced a detectable amount of ammonia upon exposure to monomethyl amine in a model atmosphere with >50% RH. Overall, the new ACSI approach to atmospheric science provides the opportunity to study the influence of interfacial chemistry on particle growth, aging, and re-admission of gas-phase compounds. / Doctor of Philosophy / "Molecules don't have a passport." - Carl Sagan. Gas molecules and particles emitted into the atmosphere in one area can travel thousands of kilometers over the course of hours to days, even weeks for some compounds. The gas-solid interactions that occur over the lifetime of particulate matter are largely unknown. I focused my doctorate on bridging the knowledge gap between traditional environmental monitoring research and highly controlled laboratory experiments. To do so, I designed a new instrument capable of creating stable model atmospheres that more accurately simulate the gas-particle interactions in Earth's atmosphere than previous environmental chambers. The Atmospheric Cloud Simulation Instrument design included a rotating chamber to increase the duration of stable particle suspensions in a laboratory and a multi-pass infrared spectrometer to monitor gas-phase reactions in situ. I explored the effect of humidity and particle composition on particle-particle coagulation and gas-particle reactions. For example, liquid aerosols at humidities higher than 35% RH do no coagulate as fast as a solid particle with the same composition in <35% RH. Similarly, the same liquid aerosols produced more gaseous product during a heterogeneous reaction with a 'pollutant' gas than solid particles. Overall, the ACSI will be an important tool for future experiments exploring individual aspects of complex atmospheric processes.

Un spectromètre utilisant la technique CRDS a été développé entre 2.00 et 2.35 µm afin de réaliser la spectroscopie en absorption de molécules d’intérêt atmosphérique et planétologique avec une très grande sensibilité et à haute résolution spectrale. Cette région du spectre correspond à une fenêtre de transparence de la vapeur d’eau et du dioxyde de carbone. Ces fenêtres sont des zones de très faible absorption utilisées pour le sondage des atmosphères terrestre et vénusienne dans lesquelles la vapeur d’eau et le dioxyde de carbone représentent respectivement les absorbants gazeux principaux dans l’infrarouge.La technique CRDS consiste à injecter des photons dans une cavité optique de haute finesse et à mesurer la durée de vie des photons dans cette cavité. Celle-ci est mesurée en interrompant l’injection des photons dans la cavité optique lors du passage en résonance du laser avec l’un des modes longitudinaux. Cette durée de vie dépend de la réflectivité des miroirs et des pertes intra-cavité comme celles induites par un gaz qui absorbe. Mesurer ces pertes en fonction de la longueur d’onde permet d’obtenir le spectre d’absorption du gaz en question. L’extrême réflectivité des miroirs permet d’atteindre dans une cavité d’un peu plus d’1 m de longueur une sensibilité équivalente à celle qui serait obtenue classiquement avec une cellule d’absorption longue de plusieurs milliers de kilomètres.Trois diodes laser DFB émettant autour de 2.35, 2.26 et 2.21 µm ont été utilisées avec ce spectromètre. Grâce à une rétro-action optique provenant d’une cavité externe, certaines de ces diodes ont pu être affinées, ce qui a permis de mieux injecter la cavité haute finesse et ainsi de réduire le niveau de bruit du spectromètre. Parallèlement grâce à une collaboration avec l’Institut d’Electronique (IES, UMR 5214) à Montpellier et la société Innoptics nous avons pu tester le prototype d’un VECSEL (Vertical-External-Cavity Surface-Emitting-Laser). Ce laser a permis de couvrir une gamme spectrale de 80 cm-1, entre 4300 et 4380 cm-1, équivalente à quatre diodes laser DFB. La sensibilité obtenue en routine avec ce spectromètre, correspondant au coefficient minimum détectable, est typiquement de 1×10-10 cm-1. Le chapitre introductif (Chapitre 1) fait le point sur les différentes techniques permettant d’acquérir des spectres en absorption dans la gamme spectrale étudiée et sur les sensibilités atteintes. A notre connaissance l’instrument développé ici est le plus sensible dans cette région du spectre. Le fonctionnement de ce spectromètre CRDS est détaillé dans le chapitre 2.Pour démontrer les performances obtenues avec notre instrument celui-ci a été utilisé pour enregistrer des transitions quadrupolaires donc de très faible intensité. Ainsi la transition S(3) de la bande 1–0 de HD a été enregistrée pour la première fois et son intensité mesurée (S=2.5×10-27 cm/molecule). La sensibilité obtenue en routine a encore pu être améliorée en réalisant une moyenne d’une centaine de spectres sur une gamme spectrale réduite pour atteindre 1×10-11 cm-1. Grâce à cela nous avons pu mesurer la position et l’intensité de la raie quadrupolaire électrique O(14) de la bande 2–0 de N2 qui est très fortement interdite avec une intensité de 1.5×10-30 cm/molecule. Ces mesures font l’objet du chapitre 3 de cette thèse.Les deux derniers chapitres sont dédiés à la caractérisation de l’absorption du CO2, au centre de la fenêtre de transparence, et à celle de la vapeur d’eau. Dans les deux cas, les transitions permises du monomère et la contribution du continuum ont été étudiées. Ce dernier correspond à une absorption variant lentement avec la longueur d’onde. Les sections efficaces du « self-continuum » de la vapeur d’eau ont notamment été mesurées en plusieurs points de la fenêtre de transparence avec une incertitude beaucoup plus faible que les mesures existantes. Elles représentent un jeu de données décisif pour tester les modèles décrivant ce continuum. / A cavity ring down spectrometer has been developed in the 2.00-2.35 µm spectral range to achieve highly sensitive absorption spectroscopy of molecules of atmospheric and planetologic interest and at high spectral resolution. This spectral region corresponds to a transparency window for water vapor and carbon dioxide. Atmospheric windows, where absorption is weak, are used to sound the Earth’s and Venus’ atmospheres where water vapor and carbon dioxide represent the main gaseous absorbers in the infrared, respectively.The CRDS technique consists of injecting photons inside a high finesse optical cavity and measuring the photon’s life time of this cavity. This life-time depends on the mirror reflectivity and on the intra-cavity losses due to the absorbing gas in the cavity. Measuring these losses versus the wavelength allow obtaining the absorption spectrum of the gas. The extreme reflectivity of the mirrors allows reaching, for a 1-meter long cavity, a sensitivity equivalent to the one obtained classically with absorption cells of several thousands of kilometers.Three DFB laser diodes emitting around 2.35, 2.26, 2.21 µm were used with this spectrometer giving access to the 4249-4257, 4422-4442 and 4516-4534 cm-1 interval, respectively. Thanks to optical feedback from an external cavity, two of these diodes were spectrally narrowed leading to a better injection of the high finesse cavity thus reducing the noise level of the spectrometer. In parallel, we tested a VECSEL (Vertical-external-Cavity, Surface Emitting laser) through a collaboration with the Institu d’Electronique (IES, UMR 5214) in Montpellier and the Innoptics firm. This laser source is able to cover a 80 cm-1 spectral range centered at 4340 cm-1, equivalent to four DFB laser diodes. In routine the achieved sensitivity with this spectrometer, corresponding to the minimum detectable coefficient is typically of 1×10-10 cm-1. The introductive chapter (Chapter 1) makes the point on the different techniques allowing absorption spectra recordings in the studied spectral region and on their sensitivity. The experimental set-up, the characteristics and performances by the CRD spectrometer developed in this work are detailed in Chapter 2. To our knowledge this instrument is the most sensitive in the considered spectral region.In Chapter 3, detection of quadrupolar electric transitions of HD and N2 illustrate the level of sensitivity reached: (i) the S(3) transition in the 1-0 band of HD has been recorded for the first time and its intensity measured (S=2.5×10-27 cm/molecule), (ii) the position and intensity of the highly forbidden O(14) quadrupolar electric transition of the 2-0 band of N2 have also been newly determined.The two last chapters are devoted to the characterization of the CO2 absorption, in the centre of the transparency window, and of the water vapor absorption. In both cases, we not only studied the allowed transitions of the monomer, but also the continuum absorption. This latter correspond to a weak background absorption varying slowly with the wave length. The self-continuum cross-sections of the water vapor continuum were measured in many spectral points through the transparency window with a much better accuracy compared to existing measurements. These CRDS data constitute a valuable data set to validate the reference model (MT_CKD) for the continuum which is implemented in most of the atmospheric radiative transfer codes.

A great deal of attention has been paid to brown carbon aerosol in the troposphere because it can both scatter and absorb solar radiation, thus affecting the Earth’s climate. However, knowledge of the optical and chemical properties of brown carbon aerosol is still limited. In this thesis, we have investigated different aspects of the optical and physicochemical properties of various brown carbon aerosol samples of potential atmospheric importance. First, reactions involving the di-carbonyl species methylglyoxal (MG) have been previously suggested as an important pathway for the production of secondary organic aerosol (SOA) in the atmosphere. Reaction in an aqueous inorganic salt solution, such as ammonium sulfate (AS), leads to the formation of light-absorbing brown carbon (BrC) product. In this thesis work, we employed a variety of experimental approaches to investigate the optical and physicochemical properties of BrC aerosol generated from this AS-MG reaction (BrC (AS/MG)). Optical properties of the dried BrC (AS/MG) aerosol particles were studied by Fourier transform infrared (FTIR) extinction spectroscopy in the mid-infrared region, cavity ring-down spectroscopy (CRDS) at 403 nm in the visible, and by measuring the light scattering phase function and polarization profiles at two different visible wavelengths, 532 and 402 nm. In addition, we used UV−vis spectroscopy to measure the mass absorption coefficient (MAC) of the solution-phase reaction products. The different optical properties were measured as a function of reaction time for a period of up to 22 days. The UV-vis absorption spectra showed a clear increase in measured MAC in the visible and near UV as the solution aged. However, analysis of the light scattering data showed no significant differences between AS and BrC aerosol in the derived refractive indices at either 532 or 402 nm, even for the longest reaction times. The FTIR extinction spectra was modeled in a Mie theory simulation to derive the complex refractive index in the mid-IR range (7000-800 cm−1); the results showed no significant changes in either the real or the imaginary parts of the refractive indices for BrC (AS/MG) aerosol particles when compared to unreacted AS aerosol. From the CRDS extinction data, the optical constants for BrC (AS/MG) particles at 403 nm were also determined through a Mie theory based analysis. The retrieved real index of refraction at 403 nm is n = 1.551 ± 0.005, with an imaginary index value of k = 0.000 ± 0.002; these values do not appear to change significantly with aging time over the course of 22 days and are not markedly different from the AS aerosol values. The small imaginary index value suggests that BrC (AS/MG) aerosol formed from this pathway may not significantly contribute to warming. In addition, CRDS measurements of the BrC (AS/MG) aerosol extinction at 403 nm as a function of particle size show a significant deviation from Mie theory simulations for particles with diameters of ≳500 nm, probably as a result of non-spherical particle shape effects. We also employed atomic force microscopy (AFM)-based IR spectroscopy to investigate the morphology and chemical composition of single SOA particles. AFM analysis of the particle morphology shows that a significant fraction of BrC (AS/MG) particles with diameters of ≳500 nm are non-spherical in shape, consistent with our observed breakdown in the applicability of Mie theory for larger particles. In addition to these measurements, we have characterized additional physicochemical properties of the BrC (AS/MG) aerosol particles including hygroscopic growth using a tandem-differential mobility analyzer. Compared to AS, BrC aerosol particles are found to have lower deliquescence relative humidity (DRH), efflorescence relative humidity (ERH), and hygroscopic growth at the same relative humidity values. Second, we investigated the optical properties of the water soluble products of limonene BrC generated from ozonolysis of d-limonene with further aging by AS. Optical constants for the dried limonene BrC aerosol product were measured at 403 nm by CRDS over the course of 9 days of aging. While the fresh limonene BrC aerosol showed a significant non-zero absorption index, the aged samples showed absorption index values consistent with zero. This result was somewhat unexpected because UV-vis absorption spectra of the bulk reaction solution showed a continued increase in absorption as the solution aged. One possible explanation for this result is that there could be an increase in the fraction of volatile chromophores as the solution ages, that are then removed in the aerosol drying process. Third, we investigated optical properties and chemical compositions of several humic substance (HS) reference samples including humic acid (HA) and fulvic acid (FA) standards by CRDS, UV-vis spectroscopy, elemental analysis, and 13C NMR spectroscopy. Measurements of the optical properties of HS is important in atmospheric science, because it is thought that HS samples have similar optical properties to organic materials, such as HUmic-Like Substances (HULIS), that exist in clouds, fogs, rainwater, and atmospheric aerosol. The humic acid aerosol samples generally showed higher absorption index values than the fulvic acid aerosol samples. We also found a correlation between the absorption index and chemical composition, with the value for k generally increasing with both increasing carbon-to-oxygen atomic ratio and sample aromaticity. In addition, we compared our measured optical constants for the HS aerosol samples with results from previous studies of field collected HULIS. The absorption index values for the fulvic acid aerosol samples give a better match than the humic acid samples when compared to the results from the field collected samples. Overall, these studies provide new details of the optical and physicochemical properties of a class of brown carbon organic aerosol which may have important implications for atmospheric chemistry and climate.

Fiber loop ring down (FLRD) spectroscopy is a sensitive spectroscopic technique that is based on absorption and it is convenient for trace chemical detection. Different FLRD systems are being improved in order to increase their sensitivity. In FLRD spectroscopy, detection of a sample is done by measuring of a leaking light at each trip within an optical cavity. Intensity of leaking light has an exponential decay where it is reduced by absorption of sample and scattering of light. In this project, two FLRD set-ups at 1535 nm and 808 nm were designed. In both set-ups, optical fiber and optical fiber couplers are used to form a cavity. At 1535 nm, a FLRD set-up is constructed by utilizing a pulsed laser and used for characterization of thin films, various pure liquids and fluorescein solutions. Two different sensor regions are designed with free space collimators and ferrules for the measurement of thin films and liquids, respectively. The future endeavor of the set-up is improvement for reliability and reproducibility of the system. For visible and NIR regions, a fiber coupled laser with four colors as 642 nm, 785 nm, 808 nm and 852 nm laser is used to design of a FLRD set-up. 808 nm laser is selected to build a prototype of the FLRD system. The construction of a closed loop FLRD set-up is completed and the system is characterized. Ultimate aim in our project is to be able to do trace detection at visible and NIR regions where the chemical sensitivity is higher.

The real-time detection of trace species is key to a wide range of applications such as on-line chemical process analysis, medical diagnostics, identification of environmentally toxic species and atmospheric pollutant sensing. There is a growing demand for suitable techniques that are not only sensitive, but also simple to operate, fast and versatile. Most currently available techniques, such as spectrophotometry, are neither sensitive enough nor fast enough for kinetic studies, whilst other techniques are too complex to be operated by the non-specialist. This thesis presents two techniques that have been developed for and applied to liquid-phase analysis, with supercontinuum (SC) radiation used for liquid-phase absorption for the first time. Firstly, supercontinuum cavity enhanced absorption spectroscopy (SC-CEAS) was used for the kinetic measurement of chemical species in the liquid phase using a linear optical cavity. This technique is simple to implement, robust and achieves a sensitivity of 9.1 × 10−7 cm−1 Hz−1/2 at a wavelength of 550nm for dye species dissolved in water. SC-CEAS is not calibration-free and for this purpose a second technique, a time-resolved variant called broadband cavity ring-down spectroscopy (BB-CRDS), was successfully developed. Use of a novel single-photon avalanche diode (SPAD) array enabled the simultaneous detection of ring-down events at multiple spectral positions for BB-CRDS measurements. The performance of both techniques is demonstrated through a number of applications that included the monitoring of an oscillating (Belousov-Zhabotinsky) reaction, detection of commercially important photoluminescent metal complexes (europium(III)) at trace level concentration, and the analysis of biomedical species (whole and lysed blood) and proteins (amyloids). Absorption spectra covering the entire visible wavelength range can be acquired in fractions of a second using sample volumes measuring only 1.0mL. Most alternative devices capable of achieving similar sensitivity have, up until now, been restricted to single wavelength measurements. This has limited speed and number of species that can be measured at once. The work presented here exemplifies the potential of these techniques as analytical tools for research scientists, healthcare practitioners and process engineers alike.

Aerosols contribute the largest uncertainty to estimates of radiative forcing of the Earth’s atmosphere, which are thought to exert a net negative radiative forcing, offsetting a potentially significant but poorly constrained fraction of the positive radiative forcing associated with greenhouse gases. Aerosols perturb the Earth’s radiative balance directly by absorbing and scattering radiation and indirectly by acting as cloud condensation nuclei, altering cloud albedo and potentially cloud lifetime. One of the major factors governing the uncertainty in estimates of aerosol direct radiative forcing is the poorly constrained aerosol single scattering albedo, which is the ratio of the aerosol scattering to extinction. In this thesis, I describe a new instrument for the measurement of aerosol optical properties using photoacoustic and cavity ring-down spectroscopy. Characterisation is performed by assessing the instrument minimum sensitivity and accuracy as well as verifying the accuracy of its calibration procedure. The instrument and calibration accuracies are assessed by comparing modelled to measured optical properties of well-characterised laboratory-generated aerosol. I then examine biases in traditional, filter-based absorption measurements by comparing to photoacoustic spectrometer absorption measurements for a range of aerosol sources at multiple wavelengths. Filter-based measurements consistently overestimate absorption although the bias magnitude is strongly source-dependent. Biases are consistently lowest when an advanced correction scheme is applied, irrespective of wavelength or aerosol source. Lastly, I assess the sensitivity of the direct radiative effect of biomass burning aerosols to aerosol and cloud optical properties over the Southeast Atlantic Ocean using a combination of offline radiative transfer modelling, satellite observations and global climate model simulations. Although the direct radiative effect depends on aerosol and cloud optical properties in a non-linear way, it appears to be only weakly dependent on sub-grid variability.

Les spectres d'échantillons naturel et enrichi en 13C du dioxyde de carbone ont été enregistrés entre 5851 et 7045 cm-1 par CW-Cavity Ring Down Spectroscopy à très haute sensibilité. Environ 8000 transitions appartenant à huit isotopologues de CO2 (12C16O2, 13C16O2, 16O12C18O, 16O12C17O, 16O13C18O, 16O13C17O and 12C18O2) ont été mesurées avec une précision estimée de 1 × 10-3 cm-1. Les paramètres spectroscopiques ont été obtenus pour un total de 238 bandes, la plupart nouvellement observées. Un certain nombre de résonances ont été observées et identifiées. Les données expérimentales disponibles dans la littérature et celles obtenues au cours de cette thèse ont été utilisées pour améliorer les paramètres du modèle effectif qui reproduit les positions avec un accord proche de leurs incertitudes expérimentales. Les intensités de 2039 et 952 raies ont été mesurées pour 13C16O2 et 12C16O2. Dans le cas de 12C16O2 la plupart des intensités mesurées appartiennent aux bandes perpendiculaires et "interdites". Ces données expérimentales, combinées à des données publiées, ont été utilisées pour améliorer les paramètres du moment dipolaire effectif de ces deux isotopologues. L'ensemble de ces paramètres reproduit les intensités mesurées aux incertitudes expérimentales près. Quatre cas de résonance interpolyade ont été observés pour la première fois dans le cas de CO2. Cette thèse apporte une contribution importante aux bases de données spectroscopiques du dioxyde de carbone : CDSD et HITRAN. Les résultats obtenus ont été intégrés dans la base de données HITRAN qui fait référence pour la physique de l'atmosphère.

Les propriétés électroniques et d'autoassemblage de deux composés organiques, le DHTAP et le bis-pyrène, ont été étudiées par microscopie à effet tunnel (STM), sous ultra-vide et à basse température. Les propriétés optiques ont été étudiées par spectroscopie en cavité résonnante (CRD), également sous ultravide.La croissance du DHTAP a été étudiée sur différents métaux nobles. La croissance du bis-pyrène a été étudiée sur Au(111). Dans chaque cas, les conditions de température idéales pour la formation d’une première couche organisée ont été déterminées. Différents modèles sont proposés pour les structures observées en première couche. La formation de la seconde couche moléculaire à également été étudiée.L'évolution des propriétés optiques, étudié par CRD, du bis-pyrène déposé sur du verre borosilicate combinée aux informations obtenues par STM ont permit d’associer ces modifications aux interactions des moments dipolaires de transition des molécules de la première et de la seconde couche et on également permit de déterminer le mode de croissance.Finalement, la possibilité d’induire des modifications chimique de la molécule de DHTAP, intégrée dans une couche auto-assemblée, en utilisant le courant tunnel du STM a été observé. Il s’avère que la molécule de DHTAP intégrée en première couche peut subir une double déshydrogénation pour conduire à la formation d’un composé identifié comme étant le 5,7,12,14-tetraazapentacene (TAP). En seconde couche, la formation de deux radicaux, en plus du TAP, a été observé. La molécule de TAP présente un certain intérêt du fait qu’elle n’est pas synthétisable pas les méthodes conventionnelle de chimie organique. / Electronic and self-assembling properties of two organic compound, the DHTAP and the bis-pyrene, have been studied by the means of low temperature scanning tunnelling microscopy (STM) under ultrahigh vacuum conditions. Optical properties have been studied by cavity ring-down (CRD) spectroscopy, also under ultrahigh vacuum conditions.The growth of DHTAP has been studied on different metallic substrate. The growth of bis-pyrene has been studied on Au(111). In each case, the optimal temperature conditions for the formation of a well-ordered first monolayer have been determined. The formation of second monolayers has also been studied. The evolution of the optical properties, studied by CRD, of bis-pyrene deposited on borosilicate glass combined with information obtained from STM allow us to identify these modifications as interactions between transition dipole moments of molecules in the first and in the second layer, and also determine the growth mode.Finally, the possibility to induce chemical modification of DHTAP molecules embedded in an ordered monolayer using the tunnelling current of the STM has been studied. It appears that the molecule embedded in the first ML can be doubly dehydrogenated which leads to the formation of a compound identified as 5,7,12,14-tetraazapentacene (TAP). In the second layer, the formation of two radicals in addition to the TAP has been observed. The TAP molecule is interesting because of that it cannot be synthesized using common organic chemical methods.