This thesis considers various roles of circadian clock genes in insect physiology. Application of molecular-biology methods in Pyrrhocoris apterus, non-model insect species, enable us to investigate involvement of circadian clock genes in photoperiod induced physiological responses. We discover involvement of neuroendocrine cells, and a role of Juvenile hormone (JH) signalization in transduction of photoperiodic signalization to peripheral tissues. We found new principles of JH signal diversification in tissue specific manner, and in addition described molecular mechanism of photoperiod induced changes in gut physiology. Comparison of gut and fat body tissue reveals that mechanism observed in the gut is tissue specific, and that circadian clock genes exhibit tissue specific functional pleiotropic effect.

The main topic of this thesis are changes in Circadian rhythms caused by cerebellar disorders. Mice with Lurcher mutation, which have specifically degenerated Purkinje cells layer, were choosen as animal model. Our results show that mutation of the glutamate receptor GluRδ2, which causes gradual degeneration of Purkinje cells, leads to damage of Circadian system. Mice with this mutation have reduced capability to adapt to external conditions in different light modes. They are also showing increased variability in endogenous cycle. The mice are also unable to show anticipatory behavior in time-restricted feeding. Compared to control group, affected mice do not show significant rhythm in levels of protein of Bmal1 gene in suprachiasmatic nuclei, paraventricular nuclei nor in habenula. Phosphorylated kinases ERK1/2 and GSK3ß also had distorted rhythms in suprachiasmatic nuclei. Because Circadian oscillations in locomotor activity are partly preserved, Circadian system is likely not damaged on molecular level. Cerebellar mutation hampers synchronization between suprachiasmatic nuclei of neurons and can also affect processes in the ventromedial hypothalamus regulating food intake. Our findings are the first to suggest functional interactions between cerebellum and Circadian pacemaker in suprachiasmatic...

Já foi demonstrado que o consumo de álcool induz complicações no início do sono e na sua manutenção, mas sua influência na produção de melatonina não é clara. O presente trabalho mostra que ratos machos ingerindo uma solução de etanol 10% apresentam uma curva de produção de melatonina alterada, com menor produção média na noite. Isto pode ser parcialmente explicado por uma redução observada na atividade da enzima TPH e especialmente da AANAT. Também verificamos que a expressão dos genes para ambas enzimas se encontra diminuída. Os resultados mostram um impacto do álcool no início da sinalização da produção de melatonina, com alteração na expressão dos receptores de noradrenalina. Também foi observado que o tratamento modifica o padrão de expressão dos receptores de melatonina MT1 e MT2 no hipocampo, no cerebelo e no núcleo supraquiasmático. Nesta última estrutura também verificamos alterações na expressão dos genes relógio. Estas alterações em conjunto poderiam ocasionar os problemas de memória, aprendizado e sincronização circadiana descritas para pacientes alcoólatras. / It has been demonstrated that alcohol consumption induces complications in sleep onset and maintenance but its influence on melatonin production remains unclear. The present results show that rats receiving 10% ethanol in drinking water for 35 days display an altered melatonin daily profile, with a reduction in the nocturnal mean. This can be partially explained by the reduction in TPH and mainly in AANAT activity. In addition, mRNA expression of both enzymes was also decreased. Upstream in melatonin synthesis pathway, the results showed that noradrenergic signaling is impaired as well. Together, these results state the reasons for the observed melatonin synthesis reduction. Our results also show that alcohol intake causes an alteration in the expression of melatonin receptors MT1 and MT2 in hippocampus, cerebellum and suprachiasmatic nucleus. We have also observed an alteration in the expression of clock genes in the suprachiasmatic nucleus. These alterations are possibly causing problems to the learning, memory process and circadian synchronization.

In this thesis the expression pattern of five circadian clock genes (cwo, pdp 1{$\varepsilon$}, ck 1{$\varepsilon$}, ck 2{$\beta$} and pdh) was studied in the housefly (Musca domestica). The influence of temperature on the expression pattern of these five genes and of two others genes, per and tim, was examined. The locomotor activity of flies exposed to three different temperature conditions was studied.

A evolução da vida na terra foi possível graças ao desenvolvimento de mecanismos temporais precisos capazes de ajustar processos fisiológicos que ocorriam no interior do organismo com os ciclos ambientais, promovendo assim, ganhos na capacidade adaptativa e comportamental desses indivíduos. A retina exerce função de suma importância nesse processo através da percepção da informação fótica que possibilita o ajuste dos ritmos circadianos. Nesse tecido, o glutamato apresenta um importante papel tanto na transmissão da informação fótica direcionada ao processo de formação de imagem quanto nos ajustes dos relógios biológicos. O objetivo desse trabalho foi avaliar como o glutamato, aplicado por períodos diferentes (6 e 12h), é capaz de modular a expressão dos genes de relógio na retina de Gallus gallus. Através de diferentes protocolos que envolveram a administração de glutamato na concentração de 100μM por 6 e 12 horas e em diferentes repetições (1 e 3 pulsos) avaliou-se através de PCR quantitativo a expressão dos genes Clock, Per2 e Bmal1. Os diferentes genes de relógio na retina de Gallus gallus apresentam diferentes respostas frente às trocas de meio e frente ao tratamento com o glutamato. O gene Clock responde com ativação da transcrição para ambos os tratamentos, de forma dependente da repetição dos estímulos. Já para o gene Per2 o tratamento com glutamato impõe uma oscilação de expressão com um ritmo ultradiano, enquanto que as trocas de meio não determinam alterações na transcrição. A expressão do gene Bmal1 não é afetada nem por trocas de meio, nem por glutamato. Novos estudos devem ser fomentados no sentido de se elucidar as vias pelas quais o glutamato leva ao perfil de oscilação observado e qual o mecanismo pelo qual a repetição de trocas de meio atua como sinalizador para o estabelecimento da sincronização celular / The evolution of life on earth was possible thanks to the development of precise temporal mechanisms to adjust physiological processes to environmental cycles, thus promoting gains in the individual adaptive and behavioral ability. The retina plays a very important role of paramount importance in this process through the perception of photic information that allows the adjustment of circadian rhythms. In this tissue, glutamate functions in the transmission of photic information directed to both image formation and biological clock entrainment. The aim of this study was to evaluate how glutamate, applied for different periods (6 and 12h), is able to modulate the expression of the clock genes in the retina of Gallus gallus. Using different protocols involving the administration of 100μM glutamate for 6 and 12 hours and with different repetitions (1 and 3 pulses) the expression of Clock, Per2 and Bmal1 genes was evaluated by quantitative PCR. Clock gene responds with activation of transcription to both treatments depending on the repetition of the stimulus. As for Per2 gene, glutamate treatment imposes an oscillation with an ultradian expression rhythm, whereas medium changes do not affect its transcription. The expression of Bmal1 gene is not affected by either medium changes or glutamate. Further studies should be encouraged in order to elucidate the pathways by which glutamate leads to observed oscillation profile, and which mechanism triggered by the repetition of medium changes acts as signal to establish cell synchronization

O estudo da expressão circadiana de genes de relógio tem sugerido hormônios como potenciais agentes sincronizadores. A regulação da ritmicidade de relógios periféricos é, aparentemente, mais um dentre os diferentes efeitos fisiológicos atribuídos aos glicocorticoides (GCs), que se constituem como candidatos a zeitgeber dado ao fato de que seus níveis circulantes apresentam padrões diários robustos e são uma das principais eferências do relógio central em mamíferos. Entretanto, em outros vertebrados, o papel dessa classe hormonal em relação a este aspecto ainda é pouco explorado e se a regulação é direta ou indireta, quais suas consequências e de que maneira ela ocorre são indagações a serem respondidas. Empregando a técnica do PCR quantitativo, avaliamos o perfil de expressão dos genes da alça negativa do núcleo da maquinaria molecular do relógio, per1b e cry1b, em células ZEM-2S do teleósteo Danio rerio expostas ao regime fotoperiódico 12:12 CE ou mantidas em escuro constante (EE) e mantidas em EE, mas condicionadas a trocas diárias de meio de cultura ou a pulsos diários de dexametasona a 10-7 M (DEXA), agonista sintético de glicocorticoide. Em 12:12 CE, ambos os genes apresentaram variação temporal, com picos de expressão observados na fase clara do ciclo. Em EE, per1b mostrou um perfil oscilatório de amplitude atenuada, enquanto para cry1b, não foi detectada oscilação ao longo das 24 h. Trocas de meio em EE alteraram significativamente o padrão de expressão de per1b e cry1b, no entanto, os pulsos diários de DEXA promoveram uma oscilação temporal muito mais pronunciada para per1b, modulando positiva ou negativamente sua expressão nos diferentes pontos temporais. O emprego do antagonista RU 486 na concentração de 10-5 M aboliu o pico de expressão detectado no ZT 16, porém, na concentração de 10-6 M, a expressão gênica foi aumentada em cerca de 3 vezes comparado ao tratamento apenas com DEXA. O gene cry1b, por sua vez, não se apresentou suscetível aos pulsos diários de DEXA. Estes resultados permitem confirmar as células ZEM-2S como modelo de relógios periféricos em cultura dada a fotossensibilidade intrínseca das mesmas, reafirmando o papel do ciclo CE como principal agente sincronizador. Os glicocorticoides certamente exercem modulação de per1b por meio da via genômica direta, sem, no entanto excluir uma possível ação via receptor de membrana, tendo em vista a atividade agonista de RU 486, podendo se constituir em um dos fatores que regulam o complexo funcionamento da maquinaria molecular do relógio biológico de zebrafish / Studies on the circadian expression of clock genes have suggested hormones as potential synchronizing agents. Regulation of rhythmicity of peripheral clocks is among the various physiological effects of glucocorticoids (GCs), which are candidate to zeitgeber, since their circulating levels present robust daily patterns and are one of the major outputs of the mammalian central pacemaker. However, in other vertebrates, such a feature has yet to be clarified as well as if the hormonal regulation is direct or indirect, what are its mechanisms and consequences. Applying qPCR technique, we evaluated the gene expression profile of per1b and cry1b, negative feedback loop members of the molecular machinery of biological clock, in ZEM-2S cells of the teleost Danio rerio. The cells were exposed to photoperiod regimen of 12:12 LD; kept in constant darkness (DD); kept in DD but subject to medium changes or treated with daily pulses of 10-7 M dexamethasone (10-7 M DEXA), a glucocorticoid synthetic analogue. In 12:12 LD, both genes presented temporal variation, with peaks of expression in the light phase. In DD, per1b showed an oscillatory profile with attenuated amplitude, whereas cry1b did not oscillate throughout 24 h. DEXA-free medium changes in constant DD conditions altered significantly per1b and cry1b expression profiles. Nevertheless, DEXA daily pulses promoted a temporal oscillation much more pronounced for per1b, modulating positively or negatively its expression at different time points, whereas cry1b was not susceptible to the hormone. RU 486 at 10-5 M abolished the peak of expression of per1b previously observed at ZT 16. On the other hand, RU 486 at 10-6 M increased the gene expression around 3-fold in comparison to just DEXA treatment. These results confirm ZEM-2S cells as a model of peripheral clocks in culture due to their intrinsec photosensitivity, emphasizing the light/dark cycle as a major synchronizing agent. The glucocorticoid modulates per1b expression, probably through a direct genomic pathway, without excluding however its possible action through membrane receptors, since RU 486 exerted agonistic activity. Glucocorticoids could, therefore, be one of the factors that regulate the complex molecular machinery of zebrafish biological clock

Os genes relógio são responsáveis pelo ritmo circadiano e homeostase de diversos sistemas biológicos, incluindo o pâncreas endócrino. Nas células β são de grande importância para a regulação do metabolismo e da secreção de insulina (SI), e sua ausência pode levar ao desenvolvimento do diabetes. A NADPH oxidase (NOX) é um complexo enzimático responsável pela produção do ânion superóxido através da redução do oxigênio molecular. Em ilhotas pancreáticas, a NOX participa da regulação do metabolismo da glicose e da SI, através da modulação do estado redox intracelular. O objetivo do nosso estudo foi verificar se a desregulação dos genes relógio mediada pela ausência de Bmal1 seria capaz de modular a NOX e o estado redox nas células β pancreáticas, influenciando assim a SI. Observamos que a ausência de Bmal1 alterou a atividade e expressão da NOX, desregulando o estado redox intracelular. Essas alterações levaram à redução da viabilidade celular e mudanças na resposta à estimulação com glicose, resultando em uma deficiência na principal função da célula β a SI. / Clock genes are responsible for homeostasis and circadian rhythm in various biological systems, including endocrine pancreas. In β -cells, they are important for the regulation of metabolism and insulin secretion (IS), and its absence can lead to development of diabetes. NADPH oxidase (NOX) is an enzymatic complex responsible for production of superoxide anion by reducing molecular oxygen. In pancreatic islets, NOX regulates glucose metabolism and IS through modulation of the intracellular redox state. The aim of our study was to investigate whether dysregulation of clock genes mediated by Bmal1 suppression would be able to modulate NOX activity and redox state in pancreatic β cells, thus influencing the SI. In this work, the lack of Bmal1 altered the activity and expression of NOX, deregulating the intracellular redox state. These changes led to reduced cell viability and changes in cell response after stimulation with glucose, resulting in a deficiency in β cell main function, GSIS.

A glândula pineal de mamíferos não é uma estrutura oscilatória autônoma, exigindo a liberação de noradrenalina (Nor) na fase escura para que a melatonina seja circadianamente produzida. Na cultura padrão de glândula pineal, o órgão não expressa ritmicidade funcional e para mimetizar o padrão fisiológico de liberação de Nor, desenvolvemos a cultura temporizada com Nor. Logo, o objetivo desse trabalho foi investigar a manutenção do ritmo de expressão dos genes relógio pela cultura temporizada, e qual a via noradrenérgica envolvida. Para os estudos in vitro, realizaram-se culturas dos grupos: controle (sem Nor), agudo (cultura padrão) e temporizado (12h com Nor/12h sem Nor). Além disso, à cultura temporizada se adicionou Prasozin e/ou Propranolol. Analisou-se expressão dos genes relógio, atividade da enzima AANAT e conteúdo de melatonina no meio de cultura. No grupo temporizado, observou-se a manutenção da ritmicidade dos genes analisados, diferente do observado nos grupos controle, agudo e temporizado tratado com bloqueadores, além do aumento da atividade enzimática da AANAT e aumento do conteúdo de melatonina. Em suma, a cultura temporizada com Nor se mostra importante para evitar a arritmicidade encontrada na cultura padrão de glândula pineal. / The mammals pineal gland is not an autonomous oscillator, the circadian melatonin synthesis requires the release of norepinephrine (NE) on the dark phase. In standard pineal gland culture, the glands do not express any functional rhythmicity. To mimic the physiological pattern of NE release in the pineal gland culture, we developed a synchronized culture with NE. We aimed to investigate the maintenance of circadian clock genes expression within rat pineal gland under acute and synchronized culture and the noradrenergic pathway involved. In in vitro experiments, culture glands were under: control (without NE), acute (standard culture) and synchronized (12h with NE/12h without NE) conditions. Furthermore, in the synchronized group were added Prasozin and/or Propranolol. We investigated clock genes expression, AANAT activity and melatonin content. The synchronized culture was able to maintain the rhythmic clock genes expression, which didn´t occur in control, acute and synchronized treated with blockers groups, and was able to improve AANAT activity and melatonin synthesis. In conclusion, synchronized culture method showed as a useful approach to avoid disruption of rhythmic variations found in the standard culture.

The hair cycle represents a dynamic process during which a complex mini- organ, the hair follicle, rhythmically regresses and regenerates. The control mechanism that governs the hair cycle ('hair cycle clock') is thought to be an autonomous oscillator system, however, its exact nature is not known. This thesis aims to understand the human hair cycle as a systems biology problem using theoretical and experimental techniques in three distinct study approaches. Using mathematical modelling, a simple two-compartment model of the human hair cycle was developed. The model concentrates on the growth control of matrix keratinocytes, a key cell population responsible for hair growth, and bi-directional communication between these cells and the inductive fibroblasts of the dermal papilla. A bistable switch and feedback inhibition produces key characteristics of human hair cycle dynamics. This study represents the first mathematically formulated theory of the 'hair cycle clock'.A second chronobiological approach was adopted to explore the molecular control of the human hair follicle by a peripheral clock mechanism. The hypothesis was tested that selected circadian clock genes regulate the human hair cycle, namely the clinically crucial follicle transformation from organ growth (anagen) to organ regression (catagen). This revealed that intra- follicular expression of core clock and clock-controlled genes display a circadian rhythm and is hair cycle-dependent. Knock-down of Period1 and Clock promotes anagen maintenance, hair matrix keratinocyte proliferation and stimulates hair follicle pigmentation. This provides the first evidence that peripheral Period1 and Clock gene activity is a component of the human 'hair cycle clock' mechanism. Lastly, an unbiased gene expression profiling approach was adopted to establish important genes and signalling pathways that regulate the human hair cycle. This revealed that similar genes and pathways previously shown to control the murine hair cycle in vivo, such as Sgk3, Msx2 and the BMP pathway, are also differentially regulated during the anagen-catagen transformation of human hair follicles. In summary, by using a three-pronged systems biology approach, the thesis has shed new light on the control of human hair follicle cycling and has generated clinically relevant information: a) The hair cycle model may predict how hair cycle modulatory agents alter human hair growth. b) Period1 and Clock are new therapeutic targets for human hair growth manipulation. c) Gene expression profiling points to additional key players in human hair cycle control with potential for future therapeutic targets.

Many processes in mammalian body exhibit circadian rhythms. These rhythms are driven by an intricate system composed of the central pacemaker, suprachiasmatic nuclei (SCN) in the brain, which entrains the peripheral oscillators in various organs, such as pancreas, liver, colon and lungs. Circadian clocks are autonomously driven in each cell based on molecular circuits involving so called clock genes, such as BMAL, CLOCK, PER and CRY. Age- dependent impairment of physiological functions of mammalian body, such as behaviour and metabolic functions, has been well documented. However, it has not been fully elucidated whether the impairment is linked with worsening of the circadian clock function. The aim of our study was to find out whether i) aging affects basic properties of the circadian clock in SCN and peripheral organs, such as pancreas, colon, liver and lungs, ii) aging- induced changes in glucose homeostasis affect the properties of the circadian clock in the pancreas, and iii) the sensitivity of circadian clock in SCN and peripheral organs to disturbances in environmental lightning conditions is altered during aging. We used groups of adult (9 months) and aged (25 months) animals which were subjected to 3 different light regimes, namely to light/dark regime (LD 12:12), constant light (LL) and...