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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Self-Selection Of Discrete Molecular Architectures In Coordination-Driven Self-Assembly

Bar, Arun Kumar 05 1900 (has links) (PDF)
Self–assembly has long been attracting chemists’ attention because it can yield fascinating supramolecular architectures in a single step. More precisely, metal–ligand coordination–driven self–assembly has stood out as an efficient methodology in this paradigm due to simple design principle and high predictability of the final molecular architectures. Moreover, one can envisage hierarchical nanoscopic molecular architectures with a vast range of size, shape and functionality via this methodology. Two–component self–assembly (involving one type of donor and one type of acceptor) is relatively easy to monitor and a widely used protocol. Whereas, multicomponent self–assembly (involving more than one types of donors/or acceptors) is too complex due to the possibility of formation of several products. The prime advantage of multicomponent self–assembly lies in one–pot construction of topologically complicated multifunctional architectures. Template– induced multicomponent self–assembly of discrete architectures is recently investigated to some extent. But, template–free multicomponent self–assembly of discrete architectures is rare in the literature. Physico–chemical property of a self–assembled product is coded in the functional groups present in its precursor building units. Functional supramolecular architectures have important applications in many potential fields such as chemosensing, drug delivery, supramolecular catalysis, etc. Porphyrin, pyrazole, imidazole, etc. functionalized organic molecules are hydrophilic as well as hydrophobic in nature. Introduction of such functionality in building units can lead to amphiphilic supramolecular complexes. Therefore, such complexes can be employed as hosts for versatile guests, or as molecular reactors for various chemical reactions. In general, counter ions block the cavity of ionic molecular architectures. Thus, when ionic molecular architectures are employed as hosts, they cannot fully provide their cavity towards guest molecules. In contrast, neutral molecular complexes are expected to be better hosts. It is well known that alkenyl/alkynyl heavy metal complexes exhibit efficient chemoluminescence due to facile metal to ligand charge transfer (MLCT). Hence, such complexes can be employed as efficient chemosensors towards the detection of electron deficient molecules such as nitroaromatics which are the chemical signatures of many powerful explosives. In these regards, a considerable effort is being paid recently to design and construct various functional supramolecular architectures. Symmetry and rigidity of building units increase predictability of the final product in self– assembly. In this regard, symmetric; rigid Pd(II)/Pt(II)–based acceptors and polypyridyl donors are explored extensively in metal–ligand coordination–driven self–assembly. In contrast to rigidity, flexibility endows building units to adopt thermodynamically most stable conformer/architecture. Hence, same set of building units can render different conformers/architectures in presence of different templates for the sake of suitable host–guest interactions. Contrary to high symmetry, asymmetry in building units leads to molecular architectures with polar environments. But, due to the possibility of formation of several isomeric products from the self–assembly involving such building units, it is difficult to monitor the reaction and purify the products. Hence, designing appropriate synthetic routes which can lead to formation of single isomeric products possessing flexible/asymmetric building units is a challenge to synthetic chemists. Investigations incorporated in the present thesis are focused to design and construct various 2D/3D discrete supramolecular architectures employing self–assembly of mainly Pd(II)/Pt(II) acceptors with N/O donors. Elemental analyses, IR/NMR/UV–Vis/fluorescence/mass spectroscopy and single crystal X–ray diffraction analysis are among prime techniques employed for characterization of the reported architectures. For a few cases, powder X–ray diffraction (PXRD) analysis and density functional theory (DFT) calculations are also carried out. CHAPTER 1 of the thesis provides a brief general introduction to self–assembly and supramolecular chemistry. It emphasizes on the metal–ligand coordination–driven self–assembly approach towards the construction of a library of 2D/3D supramolecular architectures. CHAPTER 2 describes formation of a series of template–induced and template–free discrete 3D Pd(II) molecular prisms via multicomponent self–assembly. Because of the possibility of formation of several products, multicomponent self–assembly is difficult to monitor. For example, several molecular architectures are expected from a three–component self–assembly involving a 90° acceptor [ca. cis–blocked Pd(II)], a 120° tritopic donor [ca. benzene–1,3,5– tricaboxylate (tma)] and a 180° donor [ca. 4,4'–bipyridine (4,4'–bpy) or pyrazine (pz)]. Interestingly, treatment of cis–(tmen)Pd(NO3)2 [tmen = N,N,N′,N′–tetramethylethylenediamine] with 4,4'–bpy and K3tma in 6 : 3 : 2 molar ratio at room temperature resulted in mainly a nanoscopic molecular trigonal prism [{(tmen)Pd}6(bpy)3(tma)2](NO3)6 (1) with three 4,4'–bpy pillars, two tma caps and six cis–(tmen)Pd connectors (Scheme 1). Scheme 1: Schematic representation of the formation of multicomponent self–assembled molecular trigonal prisms 1, 2 and 3. Surprisingly, the same reaction in presence of benzene–1,3,5–tricaboxylic acid (H3tma) as guest yielded exclusively the guest–encapsulated analogous molecular prism [{(tmen)Pd}6(bpy)3(tma)2(H3tma)2](NO3)6 (2; Scheme 1). It is also presented how variation of steric crowding at connectors (acceptors) influenced final outcomes. Self–assembly of cis– (en)Pd(NO3)2 [en = ethylenediamine] with 4,4'–bpy and K3tma in 6 : 3 : 2 molar ratio at room temperature resulted in a triply interlocked nanoscopic 3D coordination cage [{(en)Pd}6(bpy)3(tma)2]2(NO3)12 (3; Scheme 1). It is also shown that above trend is followed even upon changing the pillar length from 4,4'–bpy to pz. Aromatic –stacking interactions amog tma caps as well as among 4,4'–bpy pillars provided considerable stability to interlocked archirecture 3. Steric crowding due to the methyl groups in cis–(tmen)Pd connectors hindered intercalation and hence led to non–interlocked architecture 1. As expected, similar self–assembly using moderately crowded acceptor cis–(pn)Pd(NO3)2 [pn = 1,2–diaminopropane] with same donors 4,4'–bpy and K3tma resulted in a mixture of analogous triply interlocked and non– interlocked architectures in solution though it was found to be only triply interlocked architecture in solid state. Interestingly, irrespective of the steric crowding of the blocking amines, self– assembly in presence of H3tma as guest preferred exclusive formation of guest–encapsulated prisms of type 2 (Scheme 1). This is due to considerable stabilazation via aromatic –stacking interactions amog tma caps and H3tma guests. Formation of guest–free discrete molecular prisms (such as 1) and triply interlocked coordination cages (such as 3) were confirmed by spectroscopic and single crystal X–ray diffraction analyses. Whereas, formation of guest– encapsulated discrete molecular prisms (such as 2) was established by DOSY, ROESY 2D NMR spectroscpic study in conjunction with energy optimized geometry analysis. CHAPTER 3 reports design and syntheses of a series of porphyrin functionalized nanoscopic 3D molecular open prisms. Self–assembly of a C4 –symmetric tetratopic donor with a 90° ditopic acceptor can, in principle, lead to several architectures such as trigonal; tetragonal; pentagonal; hexagonal; etc. open prisms, closed cube or 1D oligomers. Both of 1,5,10,15–tetrakis(4– 12 pyridyl)porphyrin (L) and 1,5,10,15–tetrakis(3–pyridyl)porphyrin (L) possess pseudo C4 – 1 symmetry. Surprisingly, treatment of Lwith the 90° ditopic acceptor cis–(dppf)Pt(OTf)2 [dppf = diphenylphosphinoferrocene, OTf = trifluoromethanesulphonate] yielded exclusively an 1 unprecedented [6 + 12] self–assembled hexagonal open prism [(dppf)12Pt12L6](OTf)24 (4; Scheme 2). Scheme 2: Schematic representation of formation of [6 + 12] self–assembled molecular hexagonal open prism 4 and its Zn(II) embedded complex 4a. 2 In contrast, [3 + 6] self–assembled trigonal open prisms are adopted upon self–assembly of Lwith Pd(II)–based 90° ditopic acceptors. These complexes show facile incorporation of Zn(II) ions into porphyrin N4 –pockets. Moreover, they incorporate high microporosity in solid state and they are amphiphilic in nature due to porphyrin functionality. One of the trigonal open prisms revealed its considerably high adsorbate–adsorbent affinity towards non–polar gas such as N2 and protic solvent vapors such as water, methanol and ethanol. Formation of hexagonal and trigonal open prisms is fully authenticated by spectroscopic and single crystal X–ray diffraction analyses. CHAPTER 4 describes design and synthesis of a pyrazole functionalized flexible donor (L) and its self–assembly towards the construction of three nanoscopic 3D supramolecular discrete cages 5–7 (Scheme 3). Scheme 3: Schematic representation of formation of [4 + 6] self–assembled molecular double–square 5 and [2 + 3] self–assembled molecular trigonal bipyramids 6–7. 3 Due to flexibility, Lcan adopt different conformations and hence several isomeric architectures 3 are expected upon self–assembly. For example, self–assembly of Lwith a rigid ditopic 90° acceptor can lead to trigonal bipyramid (TBP), double–square, adamantanoid or truncated 3 tetrahedron. Treatment of Lwith cis–(tmen)Pd(NO3)2 yielded a [4 + 6] self–assembled double–3 square [(tmen)6Pd6L4](NO3)12 (5; Scheme 3). Much to our surprise, replacement of cis– (tmen)Pd(NO3)2 with CuCl2 or AgOTf yielded [2 + 3] self–assembled molecular TBP 33 [Cu3Cl6L2] (6) or [Ag3L2](OTf)3 (7), respectively (Scheme 3). CHAPTER 5 presents study of self–assembly involving flexible asymmetric donors and rigid 4 symmetric 90° acceptors. Three ambidentate donors 5–pyrimidinecarboxylate (L), nicotinate–56 N–oxide (L) and isonicotinate–N–oxide (L) were employed in self–assembly with symmetric rigid 90° acceptors cis–(dppf)M(OTf)2 [M = Pd(II)/Pt(II)]. Due to flexibility and different 464 connectivity of these donors L–L, several linkage isomers are expected. Treatment of Lwith cis–(dppf)M(OTf)2 in 1 : 1 molar ratio resulted in exclusive formation of single linkage isomeric 4 [3 + 3] self–assembled symmetric molecular triangles [(dppf)3M3L3](OTf)3 (8: M = Pd and 9: M = Pt), where the donors connected to metal centers in head–to–tailfashion (Scheme 4). Similar 56 reactions of Land Lwith cis–(dppf)M(OTf)2 resulted in self–sorting of [2 + 2] self–assembled molecular rhomboids 10–13 (Scheme 4). Exclusive self–selection of single linkage isomeric architectures 8, 9, 10 and 12 was fully established by spectroscopic as well as single crystal X– ray diffraction analyses. Though we could not obtain suitable X–ray diffraction quality single crystals of 11 and 13, exclusive formation of single isomeric [2 + 2] self–assembled rhomboids 131 was established by multinuclear NMR (H and P) in conjunction with ESI–MS spectroscopic studies. Scheme 4: Schematic representation of formation of complexes 8–13. Part A of the CHAPTER 6 describes how two neutral organometallic mononuclear chelates are formed upon treatment of disodium fumarate (,–unsaturated dicarboxylate) with cis– (dppf)Pd/Pt(OTf)2 at ambient conditions. Reaction of 90acceptors cis–(dppf)Pd/Pt(OTf)2 with fumarate is expected to result in [4 + 4] self–sorted molecular squares/or [2 + 2] self–sorted molecular rhomboids (Scheme 5). To our surprise, the above reactions led to an unusual reduction of C–C double bond followed by concomitant formation of mononuclear chelates [M(dppf)(C4H4O4)] (M = Pd for 14 and Pt for 15) via coordination with one of the carboxylate oxygen atoms and –carbon to metal centers (Scheme 5). Scheme 5: Schematic representation of formation of the complexes 14–15. Part B of the CHAPTER 6 describes design and synthesis of a novel shape selective “clip” 1 shaped bimetallic Pd(II) acceptor Mand its self–assembly with disodium fumarate to construct a neutral tetrametallic Pd(II) supramolecular rectangle 16 (Scheme 6, left). Similarly, a shape selective 180° bimetallic Pd(II) acceptor was also synthesized and employed in self–assembly with several “clip” shaped organic donors to achieve several cationic tetrametallic Pd(II) supramolecular rectangles. Scheme 6: Schematic representation of the formation of neutral Pd4 (left) and Pd2 (right) molecular rectangles. Moreover, synthesis of a neutral bimetallic Pd(II) molecular rectangle 17 via one–pot reaction of trans–(PEt3)2PdCl2 with 1,8–diethynylanthracene (Scheme 6, right) is also presented herein. These –electron rich rectangles exhibit prominent chemoluminescence. Chemosensitivity of these complexes towards the detection of electron deficient nitroaromatics via fluorescence study is also discussed in details in this section. (Pl refer the abstract file for figures).
2

Self-Assembled Coordination Cages for Catalysis and Proton Conduction

Samanta, Dipak January 2014 (has links) (PDF)
Biological systems construct varieties of self-assembled architectures with incredible elegance and precession utilizing proteins as subunits to accomplish widespread functions. Inspired by natural systems, construction of artificial model systems with such sophistication and delicacy has become an intriguing field of research over the last two decades using so-called self-assembly process. Judiciously selected complementary building units encoded with specific chemical and structural information can be self-assembled into pre-programmed abiological architectures in a manner similar to biological self-assembly. In this regard, kinetically labile metal-ligand coordination has become an efficient and powerful protocol for the construction of highly intricate structures with specific topology and functionality due to its simple design principle, high bond enthalpy, and predictable directionality. Two-component self-assembly is very widely used methodology and easy to monitor. Recently, multi-component self-assembly has come up as an alternative and effective pathway to achieve complex architectures connecting more than two components in a single step. However, formation of selective single product from multicomponents is entropically unfavorable. Only a very few 3D architectures have been known, that are obtained from a mixture of ditopic and tri- or tetratopic donors with metal acceptors with or without employing templates. Development of template-free multicomponent architectures is still in its infancy. Strong tendency of Pd(II)/Pt(II) to attain square-planar geometry around the metal center and kinetically labile nature of Pd(II)/Pd(II)-N(pyridine) bonds made them chemists’ favourite to engineer desired supramolecular coordination architectures with structural resemblance to Platonic or Archimedean solids by employing symmetrical pyridyl donors due to their predictable directionality. In case of poly-imidazole donors, free rotation of C-N bond connecting imidazole and phenyl ring allows various dispositions of the donating nitrogen with respect to the aromatic backbone, and therefore, the structural topology of the architectures, made of poly-imidazole ligands becomes much more interesting as compared to symmetrical Platonic or Archimedean solids. The physico-chemical properties of self-assembled coordination cages depend on the structures of the complexes. Presence of large internal cavity surrounded by aromatic core, provides an excellent environment for the encapsulation of varieties of guest molecule or as nano-reactors for different organic transformations. Structural investigation in terms of packing interactions, solvent molecules, intermolecular channels can sometimes determine the property of such self-assembled materials as well. Presence of acidic water as well as H-bonded 3D-networks of water molecules in molecular pockets make them potential material for proton conduction. In addition, metal-ligand coordination offers opportunity to introduce new functionality through pre-synthetic modification of the building constituents to influence the property of the supramolecular systems. Incorporation of unsaturated ethynyl functionality attached to the heavy transition metal is expected to exhibit efficient luminescence due to the facile metal to ligand charge transfer (MLCT). Hence, the final assemblies can be employed as chemosensors for electron-deficient nitroaromatics, which are the chemical signature of many of the commercially available explosives. The present investigation is focused on design and construction of discrete, nanoscopic coordination cages with unusual structural topology employing mainly imidazole-based donors with Pd(II)/Pt(II) acceptors and their applications in catalysis, chemosensing, and proton conduction. CHAPTER 1 of the thesis provides a general introduction to self-assembly focusing on the importance and advantages of metal-ligand directional bonding approach towards the construction of supramolecular architectures with various structural topologies. This chapter also includes a brief review on the applications of such coordination cages in various fields especially as ‘molecular flask’ for the observation of unique chemical phenomena and unusual reactions. Part A of CHAPTER 2 describes the synthesis of a new hollow Pd6 water soluble cage [{(tmen)Pd}6(timb)4](NO3)12 (1) via two-component self-assembly of a triimidazole donor and 90° Pd(II) acceptor [tmen = N,N,N’,N’-tetramethylethylenediamine, timb = 1,3,5-tris(1-imidazolyl)benzene]. The assembly was successfully crystallized with a hydrophilic dianionic benzoquinone derivative (formed in situ by the decomposition of DDQ) as [{(tmen)Pd}6(timb)4](NO3)10()2(H2O)18 (3), and a hydrophobic sterically demanding aromatic aldehyde as [{(tmen)Pd}6(timb)4](NO3)12{()4a}2(H2O)27 (5a) [where 2H2 = 2,3-dichloro-5,6-dihydroxycyclohexa-2,5diene-1,4-dione, 4a = 1-pyrenecarboxaldehyde,  = exohedral and  = endohedral] to confirm the hydrophobic nature of the cavity. Experiments were carried out to show that the hydrophobic confined nanospace of the cage (1) catalyses the Knoevenagel condensation of a series of different aromatic monoaldehydes with active methylene compounds in ‘green’ aqueous medium. The Knoevenagel condensation reaction is basically a dehydration reaction because water is a by-product. So the presence of water should, in principle, promote the backward reaction as per Le Chatelier’s principle. In general, these reactions with organic substrates are not performed in water. However, difficulty has been overcome using hydrophobic cavity of the cage. It has also been established that the cavity of the cage also enhances the rate of Diels-Alder reaction of 9-hydroxymethylanthracene with N-phenylmaleimide/N-cyclohexylmaleimide. Figure 1. Catalytic Knoevenagel condensation and Diels-Alder reaction using hydrophobic cavity of the cage (1) in aqueous medium. Part B of CHAPTER 2 reports unique three-component self-assembly incorporating both tri- and tetra-topic donors. Until now, a very few 3D-architectures have been known that are obtained from self-assembly of ditopic and tri- or tetratopic donors with metal acceptors. Scheme 1. Three-component self-assembly of a Pd7 cage (1) from cis-blocked Pd(II) 90° acceptor (M), tri-imidazole (timb) and tetra-imidazole (tim) donors. Self-assembled multicomponent discrete architecture composed of both tri- and tetra-topic donors is yet to be reported due to difficulty in prediction of the final structure from the mixture of ligands having multiple donor sites. The first example of self-sorted Pd7 molecular boat [{(tmen)Pd}7(timb)2(tim)2](NO3)14(H2O)20 (1) [tmen = N,N,N’,N’-tetramethylethylenediamine, timb = 1,3,5-tris(1-imidazolyl)-benzene, tim = 1,2,4,5-tetrakis(1-imidazolyl)benzene] was synthesized via three-component self-assembly of cis-(tmen)Pd(NO3)2, tetra- (tim) and tri-topic donors (timb) in a 7:2:2 ratio. The cavity of this cage was also utilized as a nanoreactor for catalytic Knoevenagel condensations of a series of aromatic aldehydes with 1,3-dimethylbarbituric acid (e) and Meldrum’s acid (f) in aqueous media. CHAPTER 3 presents the results of an investigation on how simple variation of length and coordination mode of linear donors can self-discriminate into markedly different complex architectures, from Pd8 molecular swing [{(tmen)Pd}8(tim)2(bpy)4](NO3)16 (1) or [{(tmen)Pd}8(tim)2(stt)5](NO3)6 (2) to Pd6 molecular boat [{(tmen)Pd}6(tim)2(bpe/dpe/pin/dpb)2](NO3)12, (3/4/5/6). Also by enhancing denticity [bidentate to tridentate (ptp)] as well as introducing asymmetry, they self-sort into Pd7 molecular tent [{(tmen)Pd}7(tim)2(ptp)2](NO3)14 (7) by employing it in a self-assembly of cis-(tmen)Pd(NO3)2 and tetraimidazole (tim) donor [where tmen = N,N,N’,N’-tetramethylethylenediamine, bpy = 4,4’-bipyridyl, stt = sodium terephthalate, bpe = trans-1,2-bis(4-pyridyl)ethylene, dpe = 1,2-di(pyridin-4-yl)ethane, pin = N-(pyridin-4-yl)isonicotinamide, dpb = 1,4-di(pyridin-4-yl)benzene, ptp = 6'-(pyridin-4-yl)-3,4':2',4''-terpyridine, and tim = 1,2,4,5-tetrakis(1- imidazolyl)benzene]. In these cases, control of the geometrical principles and stereo-electronic preferences of the building units allowed the formation of such intricate architectures. Some of these assemblies represent first examples of such types of structures, and their formation would not be anticipated by taking into account only the geometry of the donor and acceptor building units. In addition to their direct structural confirmation using single crystal X-ray diffraction analysis, propensity of the assemblies (1 and 3) to form inclusion complexes with large guest like C60 in solution was also demonstrated by fluorescence quenching experiment. The high KSV values for both the assemblies 1 (1.0 × 10-5 M-1) and 2 (1.6 × 10-6 M-1) with C60 indicated the propensity of these assemblies to form complexes with C60 in solution. Furthermore, inspection of crystal packing of other five complexes (2 and 4 - 7) revealed the presence of water molecules H-bonded with NO3– (O-H···O=N) and 3D H-bonded networks of water in the intermolecular pockets. Interestingly, the present complexes (2 and 4 - 7) show high conductivity across low-humidity range at ambient temperature and achieve a conductivity of ~10-3 Scm-1 at 75% relative humidity and 296 K. These supra-molecular architectures represent a new generation of discrete materials that display high proton conductivity under ambient conditions with activation energy comparable to that of Nafion. Scheme 2. Exclusive formation of Pd8 molecular swings (1 and 2), Pd6 molecular boats (3-6), and Pd7 molecular tent (7) via self-sorting. CHAPTER 4 presents self-selection by synergistic effect of morphological information and coordination ability of the ligands through specific coordination interactional algorithms within dynamic supramolecular systems involving a tetratopic Pd(II) acceptor and three different pyridine- and imidazole-based donors (La - Lc) [La = 1,3-bis((E)-2-(pyridin-3-yl)vinyl)benzene, Lb = 1,3-di(1H-imidazol-1-yl)benzene, and Lc = tris(4-(1H-imidazol-1-yl)phenyl)amine]. Three different cages, ‘paddle wheel’ cluster Pd2(La)4(NO3)4 (2a), molecular barrel Pd3(Lb)6(NO3)6 (2b) and molecular sphere Pd6(Lc)8(NO3)12 (2c) were first synthesized via two-component self-assembly of a tetratopic Pd(II) acceptor (1) and individual pyridine- and imidazole-based donors (La - Lc). When all the four components were allowed to interact in a complex reaction mixture, only one out of three cages was isolated. The inherent dynamic nature of the kinetically labile coordination bond allows constitutional adaptation through component exchange in the competition experiment involving multiple constituents to self-organize into specific combination and thereby, achieve the thermodynamically most stable assembly. The preferential binding affinity towards a particular partner was also established by transforming a non-preferred cage to a preferred cage by the interaction with the appropriate ligand and thus, this represents the first examples of two-step cage-to-cage transformation through constitutional evolution of Figure 2. Cage-to-cage transformation from non-preferred cage to preferred cage upon treatment with appropriate ligand; and Nyquist plots of the complexes (2b and 2c) under 98% RH condition and ambient temparature. dynamic systems induced by both coordination ability and geometry of the ligand. Moreover, computational study further supported the fact that coordination interaction of imidazole moiety to Pd(II) is enthalpically more preferred compared to pyridine which drives the selection process. In addition, analysis of crystal packing of both the complexes (2b and 2c) indicated the presence of strong H-bonds between NO3- and water molecules; as well as H-bonded 3D-networks of water. Interestingly, both the complexes exhibit promising proton conductivity (10-5 to ca. 10-3 S cm-1) at ambient temperature under relative humidity of ~98% with low activation energy. CHAPTER 5 covers design and synthesis of new organometallic building block 1,3,5-tris(4-trans-Pt(PEt3)2I(ethynyl)phenyl)benzene (1) incorporating Pt-ethynyl functionality and [2 + 3] self-assembly of its nitrate analogue 1,3,5-tris(4-trans-Pt(PEt3)2(ONO2)(ethynyl)phenyl)benzene (2) with “clip” type bidentate donors (L1 – L3) separately afforded three trigonal prismatic architectures (3a – 3c), respectively (Scheme 3), Scheme 3. Schematic presentation of three different donors (L1 – L3) and a new planar tritopic acceptor (2) and their [3 + 2] self-assembly into trigonal prismatic architectures (3a - 3c). [L1 = N1,N3-di(pyridin-3-yl)isophthalamide; L2 = 1,3-bis((E)-2-(pyridin-3-yl)vinyl)benzene; L3 = 1,3-bis(pyridin-3-ylethynyl)benzene]. All these prisms were characterized and their shapes/sizes are predicted through geometry optimization employing molecular mechanics universal force field (MMUFF) simulation. The extended -conjugation including the presence of Pt-ethynyl functionality make them electron rich as well as luminescent in nature. As expected, cages 3b and 3c exhibit fluorescent quenching in solution upon addition of picric acid [PA], which is a common constituent of many explosives. Interestingly, the non-responsive nature of fluorescent intensity towards other electron-deficient nitro-aromatic explosives (NAEs) makes them promising selective sensors for PA with a detection limit deep down to ppb. Complexes 3b – c represent the first examples of molecular metallocages as selective sensors for picric acid. Furthermore, solid-state quenching of fluorescent intensity of the thin film of 3b upon exposure to saturated vapor of picric acid draws special attention for infield application.
3

An Architectural Exploration in Coordination Driven Self-Assembly & Fluorescent Imidazolium Salts as Picric Acid Receptors

Roy, Bijan January 2016 (has links) (PDF)
Nature has always remained a constant source of inspiration for chemists for synthesizing natural products, mimicking enzymatic reactions or to construct molecular architectures resembling biological assemblies. With the rapid growth of ‘Supramolecular Chemistry’ along with the advancement of the synthetic methodologies, molecular systems with brand new complexities have been synthesized, alongside the efficacy of weak, reversible non-covalent interactions have also been extensively explored. A number of such forces including hydrogen bonding, solvophobic effect, dynamic covalent interactions and metal-ligand coordination have been exploited to assemble the molecular building blocks and stitch them together to construct discrete ‘self-assembled’ architectures integrated with desired functionalities. Metal-ligand coordination driven self-assembly certainly evolved as one of the most successful approaches for the construction of discrete supramolecular architectures during last two and half decades. The high directionality and reversible nature of certain metal-ligand bonds allow the pre-designing of sophisticated architectures which can be successfully obtained by ‘error corrections’ via a thermodynamically controlled self-assembly process. Numerous aesthetically elegant two dimensional (2D) and three dimensional (3D) metallosupramolecular architectures have been constructed which have been studied for various potential applications including guest encapsulation, catalysis, sensing, optoelectronics, drug delivery, protection of reactive species etc. Construction of such molecular architectures uses symmetric and rigid building blocks which strictly preserves their geometrical coding and thus finally determines the fate of the self-assembly. Pyridyl-based donors have been extensively used due to their well-behaved coordination with transition metal ions. Interestingly, imidazole based donors remained almost unexplored for such purpose mainly due to the rotational flexibility of imidazole moieties owing to the lack of -electron delocalization with the aromatic backbone, which makes pre-designing an architecture extremely difficult. However, this unpredictability can lead to the formation of unprecedented molecular architectures. Furthermore, the conventional rigid ‘acceptors’ used in the ‘directional bonding approach’ always results in the formation of rigid assemblies, which cannot be utilized for the construction of smart molecular machine based applications. In this context, incorporation of restricted rigidity in the building blocks can be a convenient approach to construct versatile and flexible supramolecular architectures. Although flexible donors are quite common in coordination-driven self-assembly, the use of flexible metal acceptor is scarcely Highly symmetric spherical assemblies of square planer Pd(II) and Pt(II) ions are one of the most extensively studied metallosupramolecular architectures owing to their topological similarity with the spherical virus capsids. Unfortunately, none of the reported molecular spheres are soluble in water which restricts their applications in aqueous media. On the other hand, most of the metallosupramolecular architectures cannot be used for redox based applications as the oxidation state of the associated metal ions must be kept unaltered. Although, assemblies constructed mainly by the ferrocene containing acceptors are shown to be exhibiting redox property, the donor inherited redox active metallosupramolecular systems are extremely rare. Discrete 3D metallosupramolecular cages have been extensively studied as synthetic hosts where the hydrophobic pockets have been utilized as safe shelter for reactive species, for catalyzing chemical transformations, tuning electronic and optical properties of guest molecules, as delivery vehicle for drug molecules etc. However, a major drawback of many such 3D cages is associated with their closed-shell topology, where the large cavities are accessible though relatively much smaller apertures which prevent larger guest molecules to enter inside. So, an interesting finding in this field would be to construct molecular hosts with larger apertures. Picric acid (PA) is a strong organic acid and like many other polynitroaromatic compounds, it is a powerful explosive. In addition, it has large scale industrial application for the synthesis of dyes and pharmaceuticals. However, PA has potential health hazards and it is a water pollutant owing to its high aqueous solubility. Thus, the development of selective receptors which can efficiently interact with PA and detect it at very lower concentration is an appealing field of research. Chapter 1 briefly discusses the history of supramolecular chemistry and the concept of ‘self-assembly’ along with the several synthetic methodologies for the construction of discrete supramolecular architectures. It also includes a brief discussion on the various design approaches to construct 2D and 3D molecular architectures by metal-ligand coordination which is followed by an account on some of the important applications of such metallosupramolecular architectures. At the end, a small introduction on the fluorescence-based detection techniques for PA has also been included. Chapter 2A accounts for the exploration of two linearly substituted benzene bisimidazole donors L1 and L2 for coordination-driven self-assembly. L1 and L2 possesses different ‘natural’ donor angles as the imidazole moieties in L2 are twisted heavily with respect to the phenyl plane due to the steric hindrance exerted by the methyl groups. Interestingly, while the self-assembly of L1 with [cis-(tmeda)Pd(NO3)2] (tmeda = N,N,Nꞌ,Nꞌ-tetramethylethane-1,2-diamine) exclusively formed a [3+3] molecular triangle, the self-assembly of L2 yielded a [4+4] molecular square as the major product with the same acceptor. In addition, similar treatment with the analogous Pt(II) acceptor resulted mixtures of [3+3] and [4+4] assemblies in both cases; however, the [3+3] assembly was the major product in case of L2. These contradictory product distributions in case of L2 with analogous Pd(II) and Pt(II) acceptors could be corroborated by the delicate balance between the entropic and enthalpic contributions. Scheme 1. Self-assembly of L1/L2 with [cis-(tmeda)Pd(NO3)2] and [cis-(tmeda)Pt(NO3)2], respectively. Furthermore, the reactions of L1 and L2 with a 0º bisplatinum acceptor, viz. AntPt yielded the expected [2+2] macrocycles (8 and 9), respectively. However, the interesting observations Scheme 2. Self-assemblies of L1 and L2 with the 0º bisplatinum acceptor AntPt. obtained from the variable temperature NMR studies suggested the existence of a mixture of inter-convertible conformational isomeric structures of 9. Chapter 2B describes the synthesis of a novel semi-rigid bisplatinum acceptor bisPt-NO3 based on benzil backbone for the construction of flexible metallamacrocycles. The benzil group was selected due to its unique rotational flexibility along the benzyl C-C bond which can generate a wide range of bite angles to make it compatible with the variety of donors of diverse shapes and sizes. The acceptor was successfully self-assembled with four different bisimidazole donors (L1-L4) to yield corresponding [2+2] metallamacrocycles (M1-M4) which were characterized by multinuclear NMR and ESI-MS spectrometry; and their structures were elucidated by semi-empirical geometry optimizations. Scheme 3. Self-assembly of [2+2] metallamacrocycles M1-M4 by a semi-rigid bisplatinum acceptor bisPt-NO3. Chapter 3 discusses the synthesis of the very first example of a water soluble molecular sphere MC-1 by the self-assembly of square planar Pd(II) ions with a flexible cationic tritopic donor La(NO3)3 containing 4,4-bispyridyl arms. The structural flexibility of La(NO3)3 makes it capable of binding with metal ions in its syn- or anti-conformations which was also experimentally observed in the structures of the three newly synthesized coordination polymers, viz. Ag-CP, Zn-CP and Cd-CP constructed by using La(NO3)3 as (co)ligand. Finally, the 4:3 self-assembly of [La(NO3)3] and Pd(NO3)2 in aqueous media produced the desired M6L8 type Scheme 4. Self-assembly of the water soluble molecular dice MC-1 from the tricationic tritopic donor La(NO3)3. molecular sphere- MC-1, which contain 36+ overall charges. The compound could be easily solubilized in water after isolation as solid by simple stirring at room temperature. Single crystal X-ray diffraction analysis (SCXRD) revealed the ‘dice’-shaped architecture of MC-1 where the eight faces are occupied by the coordinated Pd2+ ions and the bispyridyl arms and the vertices are occupied by mesityl moieties. MC-1 is stable in aqueous media, however disintegrates in DMSO, as observed by variable temperature NMR experiments. In addition, MC-1 also produced ligand inherited redox signals in cyclic voltammetry experiments. Chapter 4 describes the synthesis of a novel non-symmetric tetraimidazole donor L based on carbazole backbone. The complexity of the donor is associated with the allowed free rotation of the imidazole moieties along with the non-symmetric nature of the carbazole backbone which make L a very unusual donor for coordination-driven self-assembly. The crystal structure of L showed that the presence of the N-Me group caused a greater twisting of the nearby imidazole moieties with respect to the other set of imidazole moieties. The self-assembly of L with [cis-(en)Pd(NO3)2] (en = ethane-1,2-diamine) yielded a mixture of M4L8 and M6L12 type self-assembled products, as evidenced from the ESI-MS spectrometry. However, the DOSY NMR spectra of the product showed a single diffusion coefficient for all the peaks, indicating that both type of assemblies have similar size and hence suggested the formation of a tetrafacial barrel and a cubic architecture. A similar self-assembly of L with [cis-(tmeda)Pd(NO3)2] also produced a water soluble product. ESI-MS spectra in this case only confirmed the formation of a M4L8 assembly- MB-1. SCXRD analysis of the coronene encapsulated complex of MB-1 gave more insights on the sophisticated non-symmetric tetrafacial barrel architecture of MB-1 with large Scheme 5. Construction of the water soluble molecular barrel MB-1 by the self-assembly of a non-symmetric tetraimidazole donor L. rectangular apertures. The centrosymmetric molecule can encapsulate two aromatic guest molecules inside its hydrophobic cavity and was found to be efficiently encapsulating polyaromatic hydrocarbons (PAHs) in aqueous media. In addition, MB-1 has been successfully exploited to carry water insoluble perylene molecule inside HeLa cells for fluorescence imaging purpose without showing significant toxicity. L also formed a water insoluble tetrafacial barrel (MB-2) by self-assembly with [cis-(dppf)Pd(OTf)] (dppf=diphenylphosphino ferrocene) which interestingly has a symmetrical architecture, as evidenced from the SCXRD analysis. The formation of the symmetrical barrel is driven by the steric hindrance between the bulky phenyl groups of the nearby dppf moieties. Chapter 5 reports the study of interactions between picric acid (PA) with a few newly synthesized fluorescent imidazolium salts (S1-S3). The fluorescence titration study of the positively charged receptors with PA showed rapid decrease of the corresponding fluorescence intensities upon gradual addition of PA. The Stern-Volmer plots suggested the involvement of both static and dynamic quenching mechanisms which was further supported by fluorescence lifetime measurements, NMR and UV-Vis spectroscopic analyses. The values of the Stern-Volmer constants (Ksv) reflected strong receptor-PA binding. The quenching efficiency calculations in the presence of several other analytes proved that the receptors are highly selective for PA in both aqueous and non-aqueous media. The mode of interactions in solid state was investigated by the crystal structure analysis of the [S1PA] complex. 1H NMR spectra of the same complex indicated strong interaction between the imidazolium moieties of the receptor Scheme 6. The fluorescent imidazolium salts based receptors S1-S3 and the florescence titration plot for S1 with PA. Inset: the solutions of S1 and (S1+PA) in DMSO under UV light. with PA in solution; however, no significant interaction of PA with the anthracene moieties was observed in solution as we well as in the solid state. Also the quenching efficiencies and the Ksv values were correlated with the positive charge(s) present on the receptors with the help of two newly synthesized mono-positive receptors S4 and S5.

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