This thesis describes the mRNA expression patterns of the Bone Morphogenetic Proteins (BMPs), downstream members of the BMP signal pathway, BMP antagonists and candidate target genes in the developing inner ear of wild type zebrafish. The crista Bmp expression pattern is conserved between four vertebrate species. However, unlike in chick, mouse and Xenopus laevis none of the hmps examined are macula markers in zebrafish. This thesis identifies sources of Bmp signalling (the cristae, the endolymphatic duct (ED) and the semicircular canals (SCC)) and possible sites of Bmp action (the cristae, posterior macula, SCC and the mesenchyme around the ED). It also provides the first description of the early stages of ED development, a structure only recently described at later stages in the zebrafish (8dpf), and two mRNA markers of this structure (bmp4 and dachA). In analysis of zebrafish mutants with defective cristae, the presence of cristae correlated with the expression of the hmps and msxc, a putative Bmp target. This suggests the Bmps are required to form cristae and express msxc. Gain and loss of function studies have also supported a role for the Bmps in the development of the posterior macula and SCc. Ectopic hBMP4 protein was applied to the otic vesicle via protein-coated beads. This inhibited the development of the posterior macula and SCC. However, these hBMP4 beads were not sufficient to induce the expression of ectopic msxc, generate ectopic cristae or rescue crista development in mutants. Beads coated in a BMP antagonist did not affect the development of endogenous cristae or the expression of endogenous msxc. Rescued swirl (bmp2b) mutant adult zebrafish exhibit a balance defect. Early stages of inner ear development in rescued embryos were found to progress normally up until 7dpf. However, it is not clear when the rescuing mRNA or protein degrades, and work done by others in the lab has shown that Bmp2b is required at later stages to form adult SCc. The ectopic hBMP4 experiments suggest that moderating levels of Bmp signalling may be required for normal development of the SCC at early stages.

The cell possesses a number of vital mechanisms to respond to different stressors. Mitochondria are dynamic organelles which undergo constant changes in length, transport and inner membrane structure and curvature. Invaginations of this inner membrane, cristae, have been known to respond to the energetic state of mitochondria, but the regulation of these changes as well as the consequences thereof remain undetermined. We find that Optic Atrophy 1 (OPA1), a protein involved in inner membrane fusion and cristae maintenance during cell death, can respond to the energetic state of mitochondria and the cell. Moreover, OPA1-dependent changes in cristae structure are required for resistance to starvation induced cell death, proper functioning of the electron transport chain, for growth in galactose media and for maintenance of ATP synthase assembly. Interestingly, we demonstrate that select members of the mitochondrial solute carriers (SLC25A) interact with OPA1 and affect the response of OPA1 to substrate levels. Taken together, we propose an SLC25A-dependent role for OPA1 in sensing energy substrate availability and responding to alter cristae, bioenergetics and cellular survival. We also identified KIAA0664 as a novel OPA1-interacting protein, describe its subcellular localization and investigate its role in mitochondrial fusion and in mitochondrial localization. Finally, since both known carriers of mitochondrial glutathione were demonstrated to interact with OPA1, we investigated the role of OPA1 in cellular glutathione redox. OPA1 depleted cells demonstrated both increased total cellular glutathione and a shift in redox to its reduced form. The role of OPA1 in glutathione levels and redox ratios required GTPase activity, but surprisingly not fusion. Since glutathione is a master regulator of reactive oxygen species detoxification, these findings may shed light on the role of OPA1 in ROS-induced cell death pathways.

No description available.

OPA1 regulates cristae structure and mitochondrial DNA (mtDNA) maintenance. Recently, our lab identified ATAD3A and SLC25 proteins as OPA1 interactors. After validating these interactions by co-immunoprecipitation, the role of these proteins in OPA1 function was examined. Previously, ATAD3A was implicated in mtDNA maintenance. However, no change in mtDNA content or nucleoid number was observed in my studies following long-term and short-term ATAD3A knockdown suggesting that OPA1 maintains mtDNA independently of ATAD3A. Previous data from our lab demonstrates that OPA1 oligomerization and cristae structure is altered by nutrients. SLC25 proteins transport nutrients into mitochondria. Therefore, OPA1 oligomerization and cristae structure was analyzed following SLC25 protein inhibition and knockdown. Decreased OPA1 oligomerization and cristae remodeling was observed following SLC25 protein inhibition and OGC knockdown. In addition these changes correlate with decreased ATP synthase monomers and oligomers suggesting that cristae remodeling may affect metabolism. Overall, these studies enhance our understanding of OPA1 function.

OPA1 regulates cristae structure and mitochondrial DNA (mtDNA) maintenance. Recently, our lab identified ATAD3A and SLC25 proteins as OPA1 interactors. After validating these interactions by co-immunoprecipitation, the role of these proteins in OPA1 function was examined. Previously, ATAD3A was implicated in mtDNA maintenance. However, no change in mtDNA content or nucleoid number was observed in my studies following long-term and short-term ATAD3A knockdown suggesting that OPA1 maintains mtDNA independently of ATAD3A. Previous data from our lab demonstrates that OPA1 oligomerization and cristae structure is altered by nutrients. SLC25 proteins transport nutrients into mitochondria. Therefore, OPA1 oligomerization and cristae structure was analyzed following SLC25 protein inhibition and knockdown. Decreased OPA1 oligomerization and cristae remodeling was observed following SLC25 protein inhibition and OGC knockdown. In addition these changes correlate with decreased ATP synthase monomers and oligomers suggesting that cristae remodeling may affect metabolism. Overall, these studies enhance our understanding of OPA1 function.

No description available.

Mitochondrial structure and function are inextricably linked ("structure-function"), with decrements in structure-function evident across diseases. Barriers to new therapies include a complete understanding of the underlying molecular culprits, as well as effective mitochondria-targeted therapies that mitigate injury. In these works, we investigate the role of cristae-shaping factors like cardiolipin in health and disease. In a series of studies, we tested the effects of the cell-permeable tetrapeptides, elamipretide and a postulated peptide, (arginine-tyrosine-lysine-phenylalanine; "RYKF"), on the recovery of mitochondrial structure-function after injury. Elamipretide is a clinical-stage compound currently under investigation for genetic and age-related mitochondrial diseases, yet the mechanism of action is not completely understood. We used a combination of physiological models, mitochondrial imaging, and biomimetic membrane studies to test the hypothesis that elamipretide and RYKF-cardiolipin interactions improved mitochondrial structure-function. Post-ischemic treatment with elamipretide sustained mitochondrial function across electron transport chain complexes. Endogenous RYKF expression similarly improved mitochondrial respiration after peroxide and hypoxia nutrient deprivation injuries. Using two parallel electron microscopy paradigms, we show elamipretide and RYKF treatment led to maintenance of mitochondrial ultrastructure and notably, improved cristae interconnectedness. Finally, we utilized a novel biomimetic membrane system to model the pathological mitochondrial membrane and found that elamipretide and RYKF both improved biophysical pressure-area relationships through a mechanism that appears to involve aggregating cardiolipin. Our data indicate that targeting pathophysiological mitochondrial membranes with cationic, lipophilic peptides can improve bioenergetics by sustaining cristae networks and support interdependent relationships between mitochondrial structure and function. / Doctor of Philosophy / Mitochondria, the powerhouses of the cell, form energy networks that produce over 90% of the body’s energy. Mitochondrial dysfunction is implicated across diseases, yet no FDA-approved treatments exist that improve mitochondrial energy production. In this study, we tested the effects of elamipretide, a peptide that localizes to mitochondria. Although elamipretide is currently in clinical trials for several diseases characterized by energetic deficiencies, its mechanism of action is not fully understood. Since mitochondrial structure and function are directly linked, we modeled heart attacks in cultured cells and rat hearts to test the hypothesis that elamipretide and a postulated analog, RYKF, glue damaged mitochondrial membranes back together to preserve structure and function during disease. In hearts subjected to a heart attack, elamipretide significantly protected mitochondrial energy production. Similarly, RYKF protected mitochondrial function in muscle cells exposed to peroxide stress. In damaged hearts imaged with electron microscopy, elamipretide and RYKF treatment significantly improved mitochondrial structure and notably, improved the interconnectedness of mitochondrial energy networks. Furthermore, elamipretide and RYKF improved the integrity of diseased mitochondrial membranes. Together, these data support our hypothesis that elamipretide and RYKF act as mitochondrial adhesion molecules to protect mitochondrial structure and sustain energy production during disease.

Menschliche Mitochondrien enthalten etwa 1500 bis 2000 Proteine. Die meisten dieser Proteine werden im Zellkern kodiert und im Zytoplasma synthetisiert, und müssen daher über eine spezielle Maschinerie in die Mitochondrien transportiert werden. Obwohl mittlerweile viele Details über die Wirkungsweise dieser Proteinschleusen bekannt sind, wurden einige wichtige Aspekte des Proteinimports noch nicht ausreichend untersucht. Zum einen ist nicht bekannt, ob die einzelnen Importkomplexe einen Einfluss auf die mitochondrienvermittelte Apoptose haben. Weiterhin ist offen, welche genaue Rolle der Mitochondrienimport in der Pathogenese von Neisseria gonorrhoeae spielt. Außerdem ist unklar, ob Faktoren des Importapparates für die Aufrechterhaltung der mitochondrialen Morphologie notwendig sind. Um diese Fragestellungen zu untersuchen, wurden im Rahmen der vorliegenden Arbeit permanente Zelllinien hergestellt, in denen die Expression einzelner am Mitochondrienimport beteiligter Proteine mittels RNA-Interferenz (RNAi) inhibiert werden kann. Mithilfe dieser Zelllinien wurde getestet, ob die proapoptotischen Proteine Bax und Bak die Importmaschinerie benötigen, um in die äußere Mitochondrienmembran zu gelangen. Die Präsenz der beiden proapoptotischen Proteine in Mitochondrien während der Apoptose ist sehr entscheidend, da Bax und Bak in den Mitochondrien oligomerisieren und damit weitere Schritte der Apoptose einleiten. Im Widerspruch zu früheren Publikationen konnte hier gezeigt werden, dass die Translokation von Bax und Bak in die äußere Mitochondrienmembran unabhängig von Proteinimportfaktoren erfolgt. Der zweite Teil dieser Arbeit beschäftigt sich mit dem Einfluss mitochondrialer Importproteine auf die Pathogenese von Neisseria gonorrhoeae. Das Neisserienprotein PorB transloziert während der Infektion in die Mitochondrien der Wirtszelle und induziert Apoptose. Aufgrund der strukturellen Ähnlichkeit von PorB zu bestimmten Proteinen der äußeren Mitochondrienmembran wurde bisher angenommen, dass PorB diesen endogenen Proteinen auf ihrem Importweg in die äußere Mitochondrienmembran folgt. Überraschenderweise wurde im Rahmen dieser Arbeit entdeckt, dass PorB nicht von allen Komplexen der Importmaschinerie in den Mitochondrien erkannt wird. Infolgedessen transloziert es in die innere Mitochondrienmembran und wirkt dadurch toxisch auf die Wirtszelle. In einem weiteren Projekt wurde untersucht, welche Rolle die Proteinimportkomplexe der äußeren mitochondrialen Membran in der Aufrechterhaltung der Mitochondrienmorphologie spielen. Unter Verwendung der beschriebenen Zelllinien wurde entdeckt, dass in Abwesenheit des SAM (sorting and assembly) Importkomplexes die Struktur der inneren Mitochondrienmembran derangiert ist. Es wurden zudem Hinweise darauf gefunden, dass die Ursache für diesen Befund in einer Unterbrechung von Kontaktstellen zwischen den beiden Mitochondrienmembranen liegen könnte, für deren Aufrechterhaltung möglicherweise der SAM-Komplex verantwortlich ist. Die in dieser Arbeit vorgestellten Ergebnisse erlauben neue Einblicke in verschiedene Aspekte des Proteinimports in Mitochondrien. Zudem wurde mit der Entwicklung der stabilen Zelllinien ein neues Model geschaffen, anhand dessen in Zukunft weitere Detail des mitochondrialen Proteinimports erforscht werden können. / Human mitochondria comprise about 1500 to 2000 proteins. While only 13 proteins are encoded by the mitochondrial DNA the vast majority of mitochondrial proteins is encoded in the nucleus, synthesized in the cytosol, and translocated into mitochondria by a special protein import machinery. Although many details are now known about its function several important aspects of protein import in mitochondria were not unraveled yet. To begin with, the influence of the different mitochondrial import complexes on apoptosis is not known. Further, the exact role of the protein import machineries in mitochondria in the pathogenesis of Neisseria gonorrhoeae has not been clarified yet. Moreover, the question whether factors involved in protein import are required for the maintenance of the mitochondrial morphology is still unsolved. In order to address these open issues, permanent cell lines were generated within the frame of the present thesis in which the expression of single proteins implicated in mitochondrial import can be inhibited via RNA interference (RNAi). Using these cell lines, it was investigated whether the proapoptotic proteins Bax and Bak require the import machinery in order to gain access to the outer mitochondrial membrane. The presence of both proapoptotic proteins in mitochondria is essential during apoptosis as Bax and Bak oligomerize in the outer mitochondrial membrane leading to the execution of apoptosis. In contrast to earlier publications, results presented here prove that the translocation of Bax and Bak into the outer mitochondrial membrane occurs independent of its import machineries. The second part of this thesis explores the influence of mitochondrial import proteins on the pathogenesis of Neisseria gonorrhoeae. The neisserial protein PorB translocates into the mitochondria of host cells during infection and induces apoptosis. Because of structural similarities of PorB to a certain class of proteins in the outer mitochondrial membrane, it was assumed that PorB would follow the import pathway of these endogenous proteins into the outer mitochondrial membrane. Surprisingly, it was found within the present study that PorB is not recognized by all complexes implicated in this import pathway. As a consequence, it translocates into the inner mitochondrial membrane to exert its toxic effect on the host cell. In a further project, the role of import complexes of the outer mitochondrial membrane in the maintenance of the mitochondrial morphology was investigated. Using the described cell lines, it was found that in the absence of the SAM (sorting and assembly) import device, the structure of the inner mitochondrial membrane was disrupted. Further, evidence was found that the reason for this phenotype could be an interruption of contact sites between the two mitochondrial membranes, whose preservation possibly requires the SAM complex. The results presented here allow new insights into different aspects of mitochondrial protein import. Further, with the development of the stable cell lines a new model was generated that will allow future investigations on details about mitochondrial protein import.

Les mitochondries sont des organelles de quelques micromètres qui proviendraient de l'incorporation d'une alpha-protéobactérie dans le cytoplasme des cellules eucaryotes par endosymbiose. Dans les cellules eucaryotes, la mitochondrie joue un rôle central dans la production d'ATP, mais aussi dans la mort cellulaire programmée par apoptose ainsi que dans la biosynthèse de nombreuses molécules. Les mitochondries sont très polymorphes, leurs taille, forme et organisation varient considérablement selon le type cellulaire ou l'état physiologique ou pathologique de la cellule. Depuis une vingtaine d'année, l'étude des mécanismes qui contrôlent la morphogenèse, la dynamique de fission et de fusion mitochondriale et leurs rôles physiologiques est devenue un domaine majeur dans la recherche sur la mitochondrie. De plus, avec les progrès de la vidéo-microscopie, il est devenu possible de filmer des mitochondries dans le cytoplasme de cellules vivantes. Durant ma thèse, j'ai participé à la caractérisation de la fonction du gène Pantagruelian Mitochondria I (PMI), un nouveau déterminant de la morphologie des mitochondries que nous avons découvert chez la drosophile. PMI est une protéine de la membrane interne qui, en intervenant dans l'organisation de cette membrane, est indispensable à la formation de mitochondries de forme tubulaire. J'ai également contribué au développement d'outils et de méthodologies permettant la visualisation et l'étude de la dynamique mitochondriale dans des embryons de drosophiles vivants. / Mitochondria are organelles which are a few micrometers long and are originated from the incorporation of an alpha-proteobacteria in the cytoplasm of eukaryotic cells through endosymbiosis. In eukaryotic cells, mitochondria play a central role in ATP production as well as in programmed cell death and in the biosynthesis of many molecules. Mitochondria are highly polymorphic in size and form. Their organization also varies considerably according to the cell type or physiological or pathological state of the cell. In the last two decades, the study of the mechanisms controlling morphogenesis, dynamic of mitochondrial fission and fusion and their physiological roles has become a major research field of mitochondria. In addition, the progress in video-microscopy enable to record mitochondrial dynamics in the cytoplasm of living cells. I participated in the research on the characterization of gene function called Pantagruelian Mitochondria I (PMI), a novel determinant of the mitochondrial morphology that we discovered in Drosophila. PMI, a protein of the inner membrane, is involved in its membrane organization and essential to form tubular mitochondria. I also contributed to the development of experimental tools and protocols to visualize and study the mitochondrial dynamics in living Drosophila embryos. Interestingly, a stereotyped process of mitochondrial remodeling during Drosophila embryogenesis has been found and it raised a question about its role in developmental processes through my work.

Mitochondria exist in a dynamic network regulated by the opposing processes of mitochondrial fusion and fission. Regulation of mitochondrial morphology is critical for metabolism, quality control and cell survival, among other cellular processes. Large GTPases are responsible for shaping the mitochondrial network. Mitofusins 1 and 2 and Opa1 regulate outer and inner mitochondrial membrane fusion, respectively. Conversely, Drp1 is recruited to mitochondria to carry out fission. Although many proteins have been implicated in these processes, there are still many unknowns. We sought to identify novel regulators of mitochondrial morphology and conducted a genome-wide RNAi screen to identify candidate genes. We identified Reactive Oxygen species Modulator 1 (ROMO1) as a novel regulator of mitochondrial fusion and cristae integrity. In the absence of ROMO1, the mitochondrial network fragments and cristae are lost. These defects lead to impaired mitochondrial respiration and sensitization to cytochrome c release and downstream apoptosis. ROMO1 is regulated by mitochondrial REDOX at 4 cysteine residues that couple REDOX signaling to mitochondrial morphology. We have characterized ROMO1 as an interactor with the MINOS complex, required for cristae junction maintenance, and the inner mitochondrial membrane fusion GTPase OPA1. Through these interactions ROMO1 couples cristae junction security to mitochondrial fusion.