Salamanders are one of the most at-risk taxa in the world due to habitat destruction, pollution, climate change, invasive diseases, and more. This has led to a need for conservation breeding programs that are often associated with zoos and aquaria. Salamanders can be difficult to breed in captivity, though, due to their dependence on specific environmental cues and other unknown factors that stimulate sperm and egg production. To overcome these challenges, assisted reproductive technologies (ART) such as exogenous hormone administration, sperm cryopreservation, and in-vitro fertilization have been developed to increase offspring propagation and maintain genetic diversity. If genetically robust populations of salamander species can be sustainably managed ex situ into the future, then their species can be protected in situ through practices such as reintroductions into native habitats. Given the importance of salamanders to healthy, functioning ecosystems, my doctoral research focused on methods to advance caudate conservation efforts through ART. This dissertation addresses four key areas targeting salamander reproduction for conservation: 1) Novel, non-invasive hormone administration routes; 2) Sperm extender toxicity; 3) Novel sperm cryoprotectants; and 4) Application of ART to target salamander species. The objectives were to: 1) Compare nasal, oral, and intramuscular delivery routes of gonadotropin-releasing hormone on spermic response; 2) Compare sperm extenders at varying osmolalities for maintaining sperm quality over time; 3) Test dimethyl sulfoxide versus dimethylformamide as cryoprotectants to increase frozen-thawed sperm viability, motility, and fertilization capability in the eastern tiger salamander (Ambystoma tigrinum); and 4) Transfer ART protocols developed from the eastern tiger salamander to the eastern hellbender (Cryptobranchus alleganiensis) and spotted salamander (Ambystoma maculatum). This work answers critical questions that should help advance salamander ART research into the future and lead to more sustainably managed caudate populations.

Different cryoprotectant media for cryopreservation of embryos has been tested on model species, i.e. common carp (Cyprinus carpio) and common tench (Tinca tinca). The aim of the study was to obtain such cryoprotectants, which will be acceptable for freezing embryos up to the temperature {--}196 oC. Cryoprotectants of 10 % and 20 % methanol or 10 % and 20 % glycerin have been tested on the tench for 21 minutes of incubation on embryos of four stages, meaning at 11, 17, 23 and 29-hrs after activation of gametes. The results showed that the tench embryos were most resistant either to low temperature and or to the application of cryoprotectants in the stage of 29-hrs post gametes activation. On the other hand lower resistances were obtained in the stage of 11-hrs post gamete activation. Embryos of carp 2, 6, 22, 24 and 42-hrs after gametes activation at temperature 18 and 22 oC have been used for testing of concentration series of cryoprotectant methanol and two solutions marked VS1 and VS2 after previous disruption of egg envelope in enzyme alcalaze solution. Results showed linear decreasing resistance of embryos depending on increasing concentration of cryoprotectant methanol. Hatching success even at highest concentration of solution VS1 and VS2 has not declined below 70 %. Achieved results with solution VS2 have been subsequently used for freezing of carp embryos by special methods in cryobiology {--} vitrification. First results showed up to 4 % success of survival after freezing of embryos at {$-$}196 oC.

1 Abstract: Cryopreservation of cells is a complex process with many useful applications in basic biological research, medicine and agriculture. In this work we deepened the current understanding of the cryopreservation process both at physical and biological level. Results include characteristics of selected cryoprotectants (primarily DMSO, trehalose, antifreeze protein ApAFP752) in liquid phase, during phase transition and in solid phase, as well as their impact on cryopreserved cells states. Specifically, the level of cell viability, state of cell membrane and condition of cell nucleus (nuclear membrane, chromatin condensation, DNA strand breaks) are monitored over several time points after thawing. It is shown that S-phase cells (NHDF and MCF7 lines) suffer massive collapse of replication forks during cryopreservation which makes them much less suitable for cryopreservation than cells in other phases of the cell cycle. Several methods (most importantly Atomic Force Microscopy, Confocal Fluorescence Microscopy and Flow Cytometry) were used to examine the post-thaw state of cryopreserved cells. The acquired insights into cryodamage of cells can lead to optimization of current cryopreservation protocols and to more thorough evaluation of efficacy of future novel cryoprotectants.

La mise en place, l'étalonnage et l'utilisation d'un nouveau banc expérimental basses températures basé sur une technique photothermique appelée photo pyroélectricité (PPE) sont décrits dans ce manuscrit. Les échantillons que nous avons étudiés en utilisant ce nouvel instrument sont le glycérol, le 1,2 propanediol et leurs mélanges binaires avec l'eau. Ce sont des cryoprotecteurs bien connus (CPAs) utilisés dans la cryoconservation, qui est une technique de préservation des cellules et tissus vivants en les refroidissant à des très basses températures. Le but ultime de la cryoconservation est d'éviter ou de maîtriser la formation de glace et d'atteindre un état vitreux ou amorphe. La vitesse de refroidissement, de chauffage et la concentration des CPAs utilisés sont les paramètres clés qui déterminent la formation de la glace. Par conséquent, l'étude des propriétés thermiques, en particulier près de la transition vitreuse (Tg) des solutions binaires des CPAs avec de l'eau est très importante pour comprendre leur comportement lors du refroidissement. La PPE a été utilisée pour étudier l'effusivité et le temps de relaxation ∝ caractéristique de la transition vitreuse. Le Tg et la fragilité (m) ont été déterminés à partir des données de la PPE en utilisant le modèle d'Havriliak Negami. L'état vitreux présente une très grande viscosité, de l'ordre de 10¹² Pa.s au voisinage du Tg. Le Tg et m peuvent être calculés à partir de l'évolution de la viscosité en fonction de la température ou par calorimétrie différentielle à balayage (DSC). Ainsi, des études à l'aide de ces deux techniques ont été menées et les résultats ont été comparés avec les données de la PPE. / The construction, calibration and application of a new low temperature instrument based on a photothermal technique called photo pyroelectricity (PPE) is described in this manuscript. The samples we studied using the new PPE instrument were glycerol, 1,2 propanediol and their binary mixtures with water. These liquids are well known cryoprotectants (CPAs) used in cryopreservation, which is a technique to preserve the living cells and tissues from biological degradation by cooling to sub zero temperatures. The ultimate goal in cryopreservation is to avoid or control the ice formation and attain a glassy or amorphous state.The rate of cooling and heating and the concentration of the CPAs used are the key parameters that determine the ice formation. Therefore, studying the temperature dependent thermal properties especially near their glass transition temperature (Tg) of the binary solutions of CPAs with water at different concentrations are highly important to understand their behavior while cooling. The PPE technique was used to study the effusity and the ∝ relaxation time near the glass transition phenomenon. The Tg and fragility (m) were determined from the PPE data using the Havriliak Negami model. The glassy state has a characteristic property of very high viscosity, of the order of 10¹² Pa.s at Tg. The Tg and m can be calculated from the temperature evolution of viscosity or from Differential Scanning Calorimetry (DSC) measurements. Therefore, viscosity and DSC studies were conducted on the samples and were compared with PPE data.

The subject of the thesis is study of possible applications of isoform of glutamic acid polymer (-PGA). The theoretical part is focused on the properties of this biopolymer and potential applications in various areas. Producers and mechanisms of biosynthesis are also mentioned. In the experimental part, the polymer was firstly characterised by following methods: FT-IR spectroscopy, TGA, DSC and SEC-MALS. Its isoelectric point, antimicrobial activity and solubility in various solvents were also determined. The biopolymer was also precipitated by divalent cations and its interaction with oppositely charged CTAB surfactant was studied. The main experimental study was researching the effect of -PGA on viability of Saccharomyces cerevisiae and Lactobacillus rhamnosus under stress conditions by flow cytometry. The performed stresses included ethanol exposure, high temperature and freezing stress, in which its effects were compared to conventional cryoprotectants. The cells of the mentioned microorganisms were also stressed osmotically and exposed to model gastrointestinal juices - gastric, pancreatic and bile. The protective effects of -PGA on the cells were recorded in ethanol stress on Lactobacillus rhamnosus. Its excellent cryoprotection properties were confirmed and its protective effect of gastric juice exposure on Saccharomyces cerevisiae cells was also observed. At the end of the experimental part, -PGA/alginate beads suitable for encapsulation of probiotic bacteria and -PGA/chitosan nanoparticles for encapsulation of biologically active substances.

"2003". / Thesis (PhD)--Macquarie University, Division of Environmental & Life Sciences, Department of Biological Sciences, 2004. / Bibliography: leaves 136-160. / Introduction: The Antarctic environment; Antarctic inhabitants; Microfungi; Identification of microfungi; Physiological factors affecting Antactic microfungi; Flow cytometry and microfungi; Hydrolytic enzymes of industrial interest; Isolation of genes from microfungi; Aims of this study -- Materials and methods: Fungal strains and cultivation conditions; Molecular identification of fungal isolates; Fungal physiology; Hydrolase activity of secreted proteins; Gene cloning and expression -- Results and discussion: Microfungal identification; Physiological factors affecting Antarctic microfungi; Activity in microfungi when grown on solid media; Characterisation of hemicellulases from selected Antarctic microfungi; Cloning of an Antarctic Penicillium allii lipase gene and its expression in Trichoderma reesei -- Conclusions and future prospects. / The Antarctic occupies that region of the planet that falls below the 60th parallel of South latitude. Although it has been frequented by adventurers, journeyman scientists and tourists for the past 100 years, the Continent has remained virtually unoccupied. The intense cold, the absence of human occupation and the limited range of local higher animal species have combined to create the impression that the Continent is virtually devoid of life. -- Although the microbiota of the Antarctic has attracted some small level of attention in the past, the examination of filamentous microfungi has been largely overlooked and fallen to a small group of dedicated investigators. In this study it will be shown that far from being an insignificant component of the Antarctic network, microfungi represent a potentially large and so far untapped bioresource. -- From just 11 bryophyte samples collected at four sites in the Ross Sea/Dry Valleys region of Southern Antarctica, some 30 microfungal isolates were recovered. Using molecular techniques, the internal transcribed spacer (ITS) region of the nuclear ribosomal DNA (nrDNA) was sequenced to reveal no less than nine unique microfungal species. For only two of these species did the ITS sequence data produce a 100% match with records held on the public databases. This investigation also highlighted the problems inherent in the traditional morphological identification system which are now being perpetuated in the molecular database records. -- A set of seven notionally identified isolates obtained from ornithogenic soil samples gathered in the Windmill Islands in Eastern Antarctica (offshore from the Australian Antarctic Division's Casey Station) were also subjected to molecular identification based on ITS sequence data. Each of the seven isolates was identified as a unique species; six were cosmopolitan in nature and the one remaining bore very little resemblance at the molecular level to any of the recorded species although it was provided with an epithet commonly used in the identification of Antarctic microfungal species. -- To evaluate their potential as a bioresource, samples of Antarctic microfungi were examined to determine if the same physiological factors common to mesophilic species also applied to their Antarctic analogues. It is known that when placed under stress, trehalose can act as a protectant against cold (cryoprotection) and dehydration in mesophilic yeasts and fungi. The level of trehalose produced by the Antarctic isolates and their mesophilic analogues when subjected to stress was compared. A similar comparison was made for the production of glycerol which is well established as a compatible solute providing protection to mesophilic species against osmotic stress. Only in the case of trehalose production by an Antarctic Embellisia was there any indication that either of these two compounds could play a significant role in providing protection to the Antarctic fungi against the rigours of their environment, which leaves open to question what in fact does. -- In the course of investigating the means by which Antarctic microfungi guard against the damage which can ensue when subjected to oxidative stress, flow cytometry was introduced as an investigatory tool. It was established that there is a window of opportunity during which flow cytometry can be used to undertake a detailed analysis of the early stages of fungal growth from germination through hyphal development. -- Of major significance in determining the potential of Antarctic microfungi as a resource is their ability to produce new and novel enzymes and proteins. The microfungal isolates were screened for hydrolytic activity on solid media containing indicative substrates and proved to be a fruitful source of enzymes active over a range of temperatures. A detailed characterisation of two hemicellulases, β-mannanase and xylanase, secreted into a liquid medium by a subset of the Antarctic fungi and a high producing mesophilic reference strain permitted direct comparisons to be made. It was shown that the maximum hemicellulase activity of the Antarctic strains occurred at least 10°C and as much as 30°C lower than that of the reference strain and that mannanase activity for two of the Antarctic isolates exceeded 40% of their maximum at 0°C. These assay results highlight the potential of Antarctic microfungi to yield novel cold-active enzymes. -- As a final measure of the capacity of the Antarctic to yield novel enzymes from its microfungal stock, a lipase gene was selected as a target for isolation and expression in a heterologous fungal host. Using PCR techniques, the gene of interest was isolated from an Antarctic isolate of Penicillium allii, transformed into the mesophilic production host Trichoderma reesei and the active protein successfully produced in the growth medium. The recombinant lipase was assayed and found to exhibit novel characteristics consistent with a cold-adapted enzyme. / Mode of access: World Wide Web. / 186 leaves ill