Neural tube defects (NTDs) are malformations affecting about 2.6/1000 births worldwide, and 1/1000 in the United States. Their etiology remains unknown, and is likely due to interaction of genetic susceptibility factors with environmental exposure. Of the many environmental agents considered to potentially contribute to NTD risk, arsenic is one that is surrounded in controversy. We have developed a model system utilizing maternal intraperitoneal (I.P.) exposure on E7.5 and E8.5 to As 9.6 mg/kg (as sodium arsenate) in a normal inbred mouse strain, LM/Bc/Fnn, that is sensitive to arsenate-induced exencephaly. We investigated arsenate induced gene expression changes using DNA microarrays of embryonic anterior neural tube tissue, as well as monitoring of metabolic function in conjunction with the administration of select compounds to rescue the normal phenotype. Finally, to address questions concerning the importance of route of administration and potential maternal toxicity, a teratology study was performed using three arsenate doses administered orally. Regarding the gene expression study, we identified several candidate genes and ontology groups that may be responsible for arsenate’s teratogenicity. Genes include: engrailed 1 (En-1), platelet derived growth factor receptor alpha (Pdgfrα) and ephrinA7 (EphA7). Gene ontology groups identified include oxidative phosphorylation, redox response, and regulation of I-kappaB kinase/NF-kappaB cascade. Acute arsenate exposure induced disruption of mitochondrial function and dependent glucose homeostasis: subsequent hyperglycemia was teratogenic. Maternal treatment with insulin or n-acetyl cysteine, an antioxidant and precursor of glutathione synthesis, proved highly successful in rescuing both the normal phenotype, and to differing degree, the maternal hyperglycemia. Maternal oral arsenate administration also resulted in exencephaly, with exposed embryos exhibiting a positive linear trend with arsenate dosage. There were also linear trends in the relationships between arsenate dose and anomalies involving several components of the axial skeleton: the vertebrae and calvarium. There was no evidence of maternal toxicity as shown by lack of differences in maternal body weight gain, liver, and kidney weights. In conclusion, maternal arsenate exposure (regardless of exposure route) was teratogenic in our model, primarily causing NTDs. Responsible mechanisms may involve disruption of redox and glucose homeostasis as well as expression of established NTD candidate genes.

Defects in polyethylene film are often caused by contaminant particles in the polymer melt. In this research, particle properties obtainable from in-line melt monitoring, combined with processing information, are used to predict film defect properties. “Model” particles (solid and hollow glass microspheres, aluminum powder, ceramic microspheres, glass fibers, wood particles, and cross-linked polyethylene) were injected into low-density polyethylene extruder feed. Defects resulted when the polyethylene containing particles was extruded through a film die and stretched by a take-up roller as it cooled to form films 57 to 241mm in thickness. Two off-line analysis methods were further developed and applied to the defects: polarized light imaging and interferometric imaging. Polarized light showed residual stresses in the film caused by the particle as well as properties of the embedded particle. Interferometry enabled measures of the film distortion, notably defect volume. From the images, only three attributes were required for mathematical modeling: particle area, defect area, and defect volume. These attributes yielded two ”primary defect properties”: average defect height and magnification (of particle area). For all spherical particles, empirical correlations of these properties were obtained for each of the two major types of defects that emerged: high average height and low average height defects. Analysis of data for non-spherical particles was limited to showing how, in some cases, their data differed from the spherical particle correlations. To help explain empirical correlations of the primary defect properties with film thickness, a simple model was proposed and found to be supported by the high average height defect data: the “constant defect volume per unit particle area” model. It assumes that the product of average defect height and magnification is a constant for all film thicknesses. A numerical example illustrates how the methodology developed in this work can be used as a starting point for predicting film defect properties in industrial systems. A limitation is that each prediction yields two pairs of primary defect property values, one pair for each defect type. If it is necessary to identify the dominant type, then measurement of a length dimension of sufficient defects in the film is required.

This thesis presents ab-initio quantum mechanical calculations at the density functional theory (DFT) level on defect centers hosted by crystalline systems of geologic importance (i.e. fluorite, quartz, stishovite). The research brings new, complementary data to the current understanding of defect structures in minerals and explores the advantages of a theoretical approach in the field of mineral spectroscopy. This present research presents the first ab-initio calculations of the O23- type defects in crystalline solids. New data on the electronic properties and structural characteristics of O23--Y3+ defect in fluorite-type structures (CaF2 and SrF2) were obtained at the DFT level. These results confirm the stability and the molecular character of the O23--Y3+ center, revealing a spin density that is equally distributed between the two oxygen atoms. Our results report an O-O bond distance of 2.47 Å in CaF2 and 2.57 Å in SrF2. The calculated 17O and 19F hyperfine constants for of the O23--Y3+ center are in good agreement with their corresponding experimental values reported by previous electron paramagnetic resonance (EPR) and electron nuclear double resonance (ENDOR) studies, while discrepancies are notable for the 89Y hyperfine constants and are probably attributable to an inadequate basis set for Y.<p> The present study provides a more complete picture of the coupled Al-M substitution for Si in quartz, while investigating the characteristics and electronic properties of the diamagnetic [AlO4/M+]0 (where M = H, Li, Na and K) defects. The diamagnetic [AlO4/M+(a<)]0 defects with M = H, Li and Na have been shown to be more stable than their [AlO4/M+(a>)]0 structural analogues (where a> and a< denote the location of the charge compensating ion on the long-bond and short-bond side, respectively), correctly predicting the common occurrence of paramagnetic [AlO4/M+(a>)]+ centers. The present study confirms previous suggestions that incorporation of the [AlO4/M+]0 defects results in significant structural relaxations that extend at least to the nearest Si atoms. The [AlO4/K+]0 defects have been investigated for the first time and are shown to be stable in quartz. The results of this study have implications for the uptake of Al in quartz.<p> The present research evaluates the structural models of [AlO4/Li] paramagnetic defects in α-quartz. The results confirm the previous experimental findings and propose an additional paramagnetic defect [AlO4/Li+(csmall)]+, with the unpaired electron located on a short-bonded O atom and the Li compensator just off the edge of the small channel. Accordingly we suggest that three distinct Al-Li paramagnetic defects can be can be found in quartz, two of them having the hole located on a short-bonded O and one trapping the hole on a long-bonded O atom. However the structural similarities with the [AlO4/Li+(a>)]+ defect would require detection and measurement of the 17O hyperfine structure for an unequivocal EPR identification.<p> The present work also reports on first-principles quantum-mechanical calculations on the previously proposed [O23--Al3+] defect in stishovite. Our results show that the unpaired spin is 85% localised on one of the six oxygen atoms at an AlO6 octahedron, while the calculated 27Al hyperfine constants are similar to those determined by EPR experiments. Accordingly we propose the Al center to represent an [AlO6]0 defect, and hole hoping among equivalent oxygen atoms is responsible for its detection only at cryogenic temperatures. Theoretical calculations also show that diamagnetic precursors [AlO6/H+]0, [AlO6/Li+]0 and [AlO6/Na+]0 are stable in stishovite. The calculated OH bond distance and orientation are in excellent agreement with those inferred from FTIR spectra and previous theoretical calculations. The calculated [AlO6/Li+]0 and [AlO6/Na+]0 defects suggest that monovalent cations such as Li+ and Na+ are potentially important in accommodating Al in stishovite in the lower mantle.

Defects in polyethylene film are often caused by contaminant particles in the polymer melt. In this research, particle properties obtainable from in-line melt monitoring, combined with processing information, are used to predict film defect properties. “Model” particles (solid and hollow glass microspheres, aluminum powder, ceramic microspheres, glass fibers, wood particles, and cross-linked polyethylene) were injected into low-density polyethylene extruder feed. Defects resulted when the polyethylene containing particles was extruded through a film die and stretched by a take-up roller as it cooled to form films 57 to 241mm in thickness. Two off-line analysis methods were further developed and applied to the defects: polarized light imaging and interferometric imaging. Polarized light showed residual stresses in the film caused by the particle as well as properties of the embedded particle. Interferometry enabled measures of the film distortion, notably defect volume. From the images, only three attributes were required for mathematical modeling: particle area, defect area, and defect volume. These attributes yielded two ”primary defect properties”: average defect height and magnification (of particle area). For all spherical particles, empirical correlations of these properties were obtained for each of the two major types of defects that emerged: high average height and low average height defects. Analysis of data for non-spherical particles was limited to showing how, in some cases, their data differed from the spherical particle correlations. To help explain empirical correlations of the primary defect properties with film thickness, a simple model was proposed and found to be supported by the high average height defect data: the “constant defect volume per unit particle area” model. It assumes that the product of average defect height and magnification is a constant for all film thicknesses. A numerical example illustrates how the methodology developed in this work can be used as a starting point for predicting film defect properties in industrial systems. A limitation is that each prediction yields two pairs of primary defect property values, one pair for each defect type. If it is necessary to identify the dominant type, then measurement of a length dimension of sufficient defects in the film is required.

This thesis presents the results of a single-crystal electron paramagnetic resonance (EPR) spectroscopic investigation of defect centers in selected borates and borosilicates (i.e., datolite, danburite, and jeremejevite). The research brings new complementary data to the current understanding of defect structures in minerals, which are not only important to Earth Sciences but also directly relevant to environmental applications (e.g., nuclear waste disposal) and materials science. Single-crystal EPR spectra of a gamma-ray-irradiated datolite from Bergen Hill, New Jersey, USA, reveal the presence of a boron-oxygen hole center (BOHC). Spin-Hamiltonian parameters obtained from single-crystal EPR spectra and radiation-dose-dependence experiments allow us to confirm the BOHC center in datolite as the [BO4]0 type, involving hole trapping on the hydroxyl oxygen atom after the removal of the hydrogen atom: via a reaction O3BOH --> O3BO• + H0, where • denotes the unpaired electron. Density functional theory (DFT) calculations support the proposed structural model, and the calculated 11B hyperfine coupling constants are in excellent agreement with the experimental results. Also, isochronal and isothermal annealing experiments provide information about the thermal stability and decay kinetics of the [BO4]0 center in datolite. The confirmation of the [BO4]0 center and its formation from the O3BOH precursor in datolite are compared with other BOHCs in minerals and are discussed with relevance to the implications for not only understanding of BOHCs in alkali borosilicate glasses but also their applications to nuclear waste disposal. A combined study by use of synchrotron X-ray absorption spectroscopy (XAS), single-crystal EPR and pulse electron spin echo envelope modulation (ESEEM) spectroscopy provides compelling evidence for lattice-bound arsenic in danburite from Charcas, San Luis Potosi, Mexico. Arsenic K-edge X-ray absorption near-edge (XANES) spectra show that the dominant oxidation state is +3, and modeling of the extended X-ray absorption fine structure (EXAFS) spectra suggests that As3+ mainly occupies the Si site. Detailed single-crystal EPR spectra, measured before and after gamma-ray irradiation, reveal three arsenic-associated paramagnetic electron centers (I, II and III). Centers I and II are varieties of the [AsO2]2 radicals, formed from electron trapping on a substitutional As3+ ion at the Si site. This model is also supported by the 11B superhyperfine structures determined by ESEEM spectra at 80 K. Center III is the [AsO3]2 radical, originated from electron trapping on a [AsO4]3¬ group after removal of the O4 atom during gamma-ray irradiation. Therefore, arsenic in danburite is present in both the +3 and +5 oxidation states and preferentially occupies the Si site. Single-crystal EPR spectra of jeremejevite from Cape Cross, Namibia, reveal an S = 1/2 hole center characterized by a hyperfine structure arising from interaction with two equivalent 27Al nuclei. Our results suggest that this aluminum-associated oxygen hole center represents hole trapping on a hydroxyl oxygen atom linked to two equivalent octahedral Al3+ ions, after the removal of the proton (i.e., a VIAl−O−−VIAl center). Periodic ab initio UHF and DFT calculations confirmed the experimental 27Al hyperfine coupling constants and directions, supporting the proposed structural model. Also, isochronal annealing experiments provide information about the thermal stability of the VIAl−O−−VIAl center. These data obtained from the VIAl−O−−VIAl center in jeremejevite provide new insights into analogous defects that have been documented in several other minerals.

This thesis presents ab-initio quantum mechanical calculations at the density functional theory (DFT) level on defect centers hosted by crystalline systems of geologic importance (i.e. fluorite, quartz, stishovite). The research brings new, complementary data to the current understanding of defect structures in minerals and explores the advantages of a theoretical approach in the field of mineral spectroscopy. This present research presents the first ab-initio calculations of the O23- type defects in crystalline solids. New data on the electronic properties and structural characteristics of O23--Y3+ defect in fluorite-type structures (CaF2 and SrF2) were obtained at the DFT level. These results confirm the stability and the molecular character of the O23--Y3+ center, revealing a spin density that is equally distributed between the two oxygen atoms. Our results report an O-O bond distance of 2.47 Å in CaF2 and 2.57 Å in SrF2. The calculated 17O and 19F hyperfine constants for of the O23--Y3+ center are in good agreement with their corresponding experimental values reported by previous electron paramagnetic resonance (EPR) and electron nuclear double resonance (ENDOR) studies, while discrepancies are notable for the 89Y hyperfine constants and are probably attributable to an inadequate basis set for Y.<p> The present study provides a more complete picture of the coupled Al-M substitution for Si in quartz, while investigating the characteristics and electronic properties of the diamagnetic [AlO4/M+]0 (where M = H, Li, Na and K) defects. The diamagnetic [AlO4/M+(a<)]0 defects with M = H, Li and Na have been shown to be more stable than their [AlO4/M+(a>)]0 structural analogues (where a> and a< denote the location of the charge compensating ion on the long-bond and short-bond side, respectively), correctly predicting the common occurrence of paramagnetic [AlO4/M+(a>)]+ centers. The present study confirms previous suggestions that incorporation of the [AlO4/M+]0 defects results in significant structural relaxations that extend at least to the nearest Si atoms. The [AlO4/K+]0 defects have been investigated for the first time and are shown to be stable in quartz. The results of this study have implications for the uptake of Al in quartz.<p> The present research evaluates the structural models of [AlO4/Li] paramagnetic defects in α-quartz. The results confirm the previous experimental findings and propose an additional paramagnetic defect [AlO4/Li+(csmall)]+, with the unpaired electron located on a short-bonded O atom and the Li compensator just off the edge of the small channel. Accordingly we suggest that three distinct Al-Li paramagnetic defects can be can be found in quartz, two of them having the hole located on a short-bonded O and one trapping the hole on a long-bonded O atom. However the structural similarities with the [AlO4/Li+(a>)]+ defect would require detection and measurement of the 17O hyperfine structure for an unequivocal EPR identification.<p> The present work also reports on first-principles quantum-mechanical calculations on the previously proposed [O23--Al3+] defect in stishovite. Our results show that the unpaired spin is 85% localised on one of the six oxygen atoms at an AlO6 octahedron, while the calculated 27Al hyperfine constants are similar to those determined by EPR experiments. Accordingly we propose the Al center to represent an [AlO6]0 defect, and hole hoping among equivalent oxygen atoms is responsible for its detection only at cryogenic temperatures. Theoretical calculations also show that diamagnetic precursors [AlO6/H+]0, [AlO6/Li+]0 and [AlO6/Na+]0 are stable in stishovite. The calculated OH bond distance and orientation are in excellent agreement with those inferred from FTIR spectra and previous theoretical calculations. The calculated [AlO6/Li+]0 and [AlO6/Na+]0 defects suggest that monovalent cations such as Li+ and Na+ are potentially important in accommodating Al in stishovite in the lower mantle.

In order to reach the economic scale, reduce unit cost and to enhance the international competitiveness, China Steel Cooperation constructed a subsidiary - Dragon Steel Cooperation, a 5-million-ton integrated steel plant nearby Taichung Harbor. Starting from iron-smelting, steel-making till steel-rolling, each step follows one another. If any of the steps occurs a problem, the whole production will be affected. The quality of the new construction is related to the life cycle of the equipments, the stability of the operation and the quality of the products. Further more, if the new construction is imperfect, there might be plenty of accidents, such as public safety, environment issues, protest from the inhabitants, etc. The influences could be huge. The main quality influences of the new construction work are low bids from the contractors, shoddy work and use inferior material during the construction, lack of control, welding problems, etc. According to the above main factors, we listed 20 secondary factors, e.g. bad financial situation, vicious competition, budget shortfalls, etc., and use analytical hierarchy process to find the relationship between them. In this thesis, there are in total 32 people have been interviewed, 8 of them are first-line supervisors (the up, middle and downstream of the steel plant, from steel-smelting plant, steel-rolling plant, public facility department to civil department.) Meanwhile, 10 senior executives are also interviewed; relevant literatures are used as related inference. Via this analysis, the most important factor of influencing the welding quality of new construction work is ¡§welding problem¡¨ with 0.297 rating point. Analyzing the third layer factors of low bids rating, the highest point is ¡§vicious competition¡¨ with 0.354. In shoddy work and use inferior material factor, ¡§changing subcontractor frequently¡¨ is the highest with 0.491 rating point. In false inspection, the ¡§progressing pressure¡¨ is the highest with 0.378 rating point. In welding problem, the ¡§construct without drawing¡¨ is the highest point with 0.371. In other factors, ¡§defected raw material¡¨ is the highest with 0.275 rating point. If the above problem solved, the welding quality in new construction work will improve tremendously. Keywords: non-destructive testing, quality of construction, new construction work, turnkey contractors, defect.

Neural tube defects (NTDs) are malformations affecting about 2.6/1000 births worldwide, and 1/1000 in the United States. Their etiology remains unknown, and is likely due to interaction of genetic susceptibility factors with environmental exposure. Of the many environmental agents considered to potentially contribute to NTD risk, arsenic is one that is surrounded in controversy. We have developed a model system utilizing maternal intraperitoneal (I.P.) exposure on E7.5 and E8.5 to As 9.6 mg/kg (as sodium arsenate) in a normal inbred mouse strain, LM/Bc/Fnn, that is sensitive to arsenate-induced exencephaly. We investigated arsenate induced gene expression changes using DNA microarrays of embryonic anterior neural tube tissue, as well as monitoring of metabolic function in conjunction with the administration of select compounds to rescue the normal phenotype. Finally, to address questions concerning the importance of route of administration and potential maternal toxicity, a teratology study was performed using three arsenate doses administered orally. Regarding the gene expression study, we identified several candidate genes and ontology groups that may be responsible for arsenate’s teratogenicity. Genes include: engrailed 1 (En-1), platelet derived growth factor receptor alpha (Pdgfrα) and ephrinA7 (EphA7). Gene ontology groups identified include oxidative phosphorylation, redox response, and regulation of I-kappaB kinase/NF-kappaB cascade. Acute arsenate exposure induced disruption of mitochondrial function and dependent glucose homeostasis: subsequent hyperglycemia was teratogenic. Maternal treatment with insulin or n-acetyl cysteine, an antioxidant and precursor of glutathione synthesis, proved highly successful in rescuing both the normal phenotype, and to differing degree, the maternal hyperglycemia. Maternal oral arsenate administration also resulted in exencephaly, with exposed embryos exhibiting a positive linear trend with arsenate dosage. There were also linear trends in the relationships between arsenate dose and anomalies involving several components of the axial skeleton: the vertebrae and calvarium. There was no evidence of maternal toxicity as shown by lack of differences in maternal body weight gain, liver, and kidney weights. In conclusion, maternal arsenate exposure (regardless of exposure route) was teratogenic in our model, primarily causing NTDs. Responsible mechanisms may involve disruption of redox and glucose homeostasis as well as expression of established NTD candidate genes.

Since ancient times, coffee has been a savory drink for most of the world's population. It is the second most widely distributed commodity after crude oil in the world. Hence, there has always been a pressure on the coffee industry to produce more volume of good quality coffee. The coffee industry has not been able to meet this increasing coffee demand due to various reasons, such as low crop yield, high coffee rejection rate etc. Historically, the coffee production industry has had high rejection rates due to inadequate knowledge about the defects that plague coffee and the lack of research to detect and eliminate the defective coffee beans. In this thesis, an attempt has been made to minimize the rejection rate of coffee beans due to a specific defect called "Potato Defect". Potato defect is very prominent in East African countries for reasons not yet known. It is caused by an increase in the concentration of 2-isopropyl -3-methoxypyrazine (IPMP), present in parts per billion concentration in coffee beans. In this thesis, various techniques have been evaluated to detect the increased concentration of IPMP, and then eliminate the 'potato defect' infected coffee beans. As these proposed techniques need to be implemented on an industrial scale, special care has been taken to keep the inspection time of coffee beans as low as possible to minimize its negative impact on the overall coffee production rate. Considering both sensitivity and time, non destructive methods such as ion mobility spectrometry, cavity ring down spectrometry and electronic nose were assessed for their suitability to identify low concentrations of IPMP in the complex matrix of coffee volatiles. Experiments were also conducted by Solid Phase Micro Extraction (SPME), followed by multidimensional gas chromatography with simultaneous olfactory and mass spectrometric detection (GC- MS-O) technology to validate information related to the 'potato defect'. GC-MS-O could detect IPMP present in whole green coffee beans while other researchers only detected IPMP in ground coffee. The findings of this thesis opens the doors for the coffee industry to establish non destructive, sensitive methodology to analyze further coffee aroma.

SKD1 (suppressor of potassium transport growth defect) belongs to the AAA-ATPase family and is one of the class E VPS (vacuolar protein sorting) proteins. The ATPase activity-deficient form of SKD1 leads the perturbation of mechanism transport through endosomes and lysosomes, however, the molecular mechanism behind the action of SKD1 is poorly understood. In this study, it is identified that VPS4_YEAST (Saccharomyces cerevisiae) is the homology protein of mcSKD1 (Mesembryanthemum crystallinum SKD1) employing sequence profile analysis. The full-length mcSKD1 protein possesses MIT, AAA-ATPase, and NACHT domains of VPS4_YEAST. It is investigated that VPS4_YEAST (NACHT domain) interacts to BRO1_YEAST (HEAT repeat), BRO1_YEAST (HEAT repeat) to AIP1_YEAST (WD40 repeat), AIP1_YEAST (WD40 repeat) to ABP1_YEAST (ADF domain), ABP1_YEAST (ADF domain) to ARP2_YEAST (ACTIN domain), respectively, from yeast two-hybrid system via protein-protein interaction. These proteins employ the function of cytoskeleton structural proteins in cells. Hence, mcSKD1 protein may involve the mechanisms of potassium ion uptake and salt tolerance via the function of cytoskeleton structural proteins.