The implementation of Unmanned Aerial Vehicles (UAVs) and Structure‐from‐Motion (SfM) photogrammetry in assessing forest structures for forest inventory and biomass estimations has shown great promise in reducing costs and labour intensity while providing relative accuracy. Tree Height (TH) and Diameter at Breast Height (DBH) are two major variables in biomass assessment. UAV-based TH estimations depend on reliable Digital Terrain Models (DTMs), while UAV-based DBH estimations depend on reliable dense photogrammetric point cloud. The main aim of this study was to evaluate the performance of multirotor UAV photogrammetric point cloud in estimating homogeneous and heterogeneous forest structures, and their comparison to more accurate LiDAR data obtained from Aerial Laser Scanners (ALS), Terrestrial Laser Scanners (TLS), and more conventional means like manual field measurements. TH was assessed using UAVSfM and LiDAR point cloud derived DTMs, while DBH was assessed by comparing UAVSfM photogrammetric point cloud to LiDAR point cloud, as well as to manual measurements. The results obtained in the study indicated that there was a high correlation between UAVSfM TH and ALSLiDAR TH (R2 = 0.9258) for homogeneous forest structures, while a lower correlation between UAVSfM TH and TLSLiDAR TH (R2 = 0.8614) and UAVSfM TH and ALSLiDAR TH (R2 = 0.8850) was achieved for heterogeneous forest structures. A moderate correlation was obtained between UAVSfM DBH and field measurements (R2 = 0.5955) for homogenous forest structures, as well as between UAVSfM DBH and TLSLiDAR DBH (R2 = 0.5237), but a low correlation between UAVSfM DBH and UAVLiDAR DBH (R2 = 0.1114). This research has demonstrated that UAVSfM can be adequately used as a cheaper alternative in forestry management compared to more highcost and accurate LiDAR, as well as traditional technologies, depending on accuracy requirements.

Terrestrial laser scanning (TLS) has been successfully used for three-dimensional (3D) data capture in forests for almost two decades. Beyond the plot-based data capturing capabilities of TLS, vehicle-based mobile laser scanning (MLS) systems have the clear advantage of fast and precise corridor-like 3D data capture, thus providing a much larger coverage within shorter acquisition time. This paper compares and discusses advantages and disadvantages of multi-temporal MLS data acquisition compared to established TLS data recording schemes. In this pilot study on integrated TLS and MLS data processing in a forest, it could be shown that existing TLS data evaluation routines can be used for MLS data processing. Methods of automatic laser scanner data processing for forest inventory parameter determination and quantitative structure model (QSM) generation were tested in two sample plots using data from both scanning methods and from different seasons. TLS in a multi-scan configuration delivers very high-density 3D point clouds, which form a valuable basis for generating high-quality QSMs. The pilot study shows that MLS is able to provide high-quality data for an equivalent determination of relevant forest inventory parameters compared to TLS. Parameters such as tree position, diameter at breast height (DBH) or tree height can be determined from MLS data with an accuracy similar to the accuracy of the parameter derived from TLS data. Results for instance in DBH determination by cylinder fitting yielded a standard deviation of 1.1 cm for trees in TLS data and 3.7 cm in MLS data. However, the resolution of MLS scans was found insufficient for successful QSM generation. The registration of MLS data in forests furthermore requires additional effort in considering effects caused by poor GNSS signal.

In most breeding programmes breeders use phenotypic data obtained in breeding trials to rank the performance of the parents or progeny on pre-selected performance criteria. Through this ranking the best candidates are identified and selected for breeding or production purposes. Best Linear Unbiased Prediction (BLUP), is an efficient selection method to use, combining information into a single index. Unbalanced or messy data is frequently found in tree breeding trial data. Trial individuals are related and a degree of correlation is expected between individuals over sites, which can lead to collinearity in the data which may lead to instability in certain selection models. A high degree of collinearity may cause problems and adversely affect the prediction of the breeding values in a BLUP selection index. Simulation studies have highlighted that instability is a concern and needs to be investigated in experimental data. The occurrence of instability, relating to collinearity, in BLUP of tree breeding data and possible methods to deal with it were investigated in this study. Case study data from 39 forestry breeding trials (three generations) of Eucalyptus grandis and 20 trials of Pinus patula (two generations) were used. A series of BLUP predictions (rankings) using three selection traits and 10 economic weighting sets were made. Backward and forward prediction models with three different matrix inversion techniques (singular value decomposition, Gaussian elimination - partial and full pivoting) and an adapted ridge regression technique were used in calculating BLUP indices. A Delphi and Clipper version of the same BLUP programme which run with different computational numerical precision were used and compared. Predicted breeding values (forward prediction) were determined in the F1 and F2 E. grandis trials and F1 P. patula trials and realised breeding performance (backward prediction) was determined in the F2 and F3 E. grandis trials and F2 P. patula trials. The accuracy (correlation between the predicted breeding values and realised breeding performance) was estimated in order to assess the efficiency of the predictions and evaluate the different matrix inversion methods. The magnitude of the accuracy (correlations) was found to mostly be of acceptable magnitude when compared to the heritability of the compound weighted trait in the F1F2 E. grandis scenarios. Realised genetic gains were also calculated for each method used. Instability was observed in both E. grandis and P. patula breeding data in the study, and this may cause a significant loss in realised genetic gains. Instability can be identified by examining the matrix calculated from the product of the phenotypic covariance matrix with its inverse, for deviations from the expected identity pattern. Results of this study indicate that it may not always be optimal to use a higher numerical precision programme when there is collinearity in the data and instability in the matrix calculations. In some cases, where there is a large amount of collinearity, the use of a higher precision programme for BLUP calculations can significantly increase or decrease the accuracy of the rankings. The different matrix inversion techniques particularly SVD and adapted ridge regression did not perform much better than the full pivoting technique. The study found that it is beneficial to use the full pivoting Gaussian elimination matrix inversion technique in preference to the partial pivoting Gaussian elimination matrix inversion technique for both high and lower numerical precision programmes. / Thesis (PhD)--University of Pretoria, 2013. / gm2014 / Genetics / unrestricted