With the increased application of large eddy simulations and hybrid Reynolds-averaged Navier-Stokes techniques, the generation of realistic turbulence at inflow boundaries is crucial for the accuracy of numerical results. In this dissertation research, two novel turbulence inflow generation methods are derived and validated. The first method, the Triple Hill's Vortex Synthetic Eddy Method, is a new type of synthetic eddy method, where the fundamental eddy is constructed through a superposition of three orthogonal Hill's vortices. The amplitudes of the three vortices that form the fundamental eddy are calculated from known Reynolds stress profiles through a transformation from the physical reference frame to the principal-axis reference frame. In this way, divergenceree anisotropic turbulent velocity fields are obtained that can reproduce a given Reynolds stress tensor. The model was tested on isotropic turbulence decay, turbulent channel flow, and a spatially developing turbulent mixing layer. The Triple Hill's Vortex Synthetic Eddy Method exhibited a quicker recovery of the desired turbulent flow conditions when compared with other current synthetic turbulence methods. The second method is the Control Forced Concurrent Precursor Method which combines an existing concurrent precursor method and a mean flow forcing method with a new extension of the controlled forcing method. Turbulent inflow boundary conditions are imposed through a region of body forces added as source terms to the momentum equations of the main simulation which transfer flow variables from the precursor simulation. Controlled forcing planes imposed in the precursor simulation, allow for specific Reynolds stress tensors and mean velocities to be imposed. A unique feature of the approach is that the proposed fluctuating flow controlled forcing method can be applied to multiple fluctuating velocity components and couple their calculation to amplify the existing fluctuations present in the precursor flow field so that prescribed anisotropic Reynolds stress tensors can be reproduced. The new method was tested on high and low Reynolds number turbulent boundary layer flows, where the proposed fluctuating flow controlled forcing method greatly accelerated the development of the turbulent boundary layers when compared with cases without controlled forcing and with only the original controlled forcing.

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<p>Forest ecosystems are a significant component of the global carbon (C) cycle. Afforestation is considered a cost-effective and ecologically viable means to sequester atmospheric carbon. However, afforestation requires intensive management practices, including thinning, to maintain and enhance the carbon sequestration capability of the forest. This study examines thinning effects on forest carbon dynamics using eddy covariance (EC) methods. In January 2012, a 74-year-old white pine (<em>Pinus strobus</em>) plantation located in southern Ontario was selectively thinned. Approximately 30% of trees, equating to 2308 m³ of wood (sawlogs and pulpwood), were removed to improve light, water and nutrient availability for remaining trees. Fluxes of energy, water, carbon dioxide (CO₂) as well as meteorological variables were measured throughout the year following thinning and compared to data from the previous 9 years to evaluate effects of thinning on forest carbon dynamics. Mean annual net ecosystem productivity (NEP), gross ecosystem productivity (GEP) and ecosystem respiration (RE) from the 9 years prior to thinning were 290, 1413 and 1118g C m^-2<strong>,</strong> respectively. Post-thinning NEP, GEP and RE were 154, 1509 and 1350 g C m<strong>^-</strong>²<strong> </strong>year^-1, respectively. Post-thinning NEP was significantly less than pre-thinning at the annual time scale due to higher RE, however post-thinning fluxes were still within the range of interannual variability. At this site, approximately 20% of interannual variability in NEP, GEP and RE was explained by environmental conditions. Effects of extreme weather events, particularly heat and drought stress, were demonstrated to negatively impact NEP. Biotic responses to environmental drivers explained the remaining 80% of interannual variability in fluxes. Thinning did not significantly impact these responses. Further, results suggest that thinning may improve tolerance to drought stress by improving water availability for remaining trees. Therefore, thinning has the potential to effectively reduce resource competition and stimulate growth and carbon sequestration in temperate coniferous forests.</p> / Master of Science (MSc)

<p>Northern boreal peatlands represent a globally significant carbon pool that are at risk of drying through land-use change and projected future climate change. The current ecohydrological conceptualization of peatland response to persistent water table (WT) drawdown is largely based on short-term manipulation experiments, but where the long-term response may be mediated by vegetation and microtopography dynamics. The objective of this thesis is to examine the changes to peatland evapotranspiration, soil physical properties, and moisture stress in response to a long-term WT manipulation. The energy balance, hydrology, vegetation, and soil properties were examined at three adjacent peatland sites in the southern sub-boreal region which were subjected to WT manipulations on the order of ±10 cm at two treatment sites (WET, and DRY) compared to the reference site (INT) as a result of berm construction in the 1950s.</p> <p>Sites with an increasing depth to WT were found to have greater microtopographic variation and proportion of the surface covered by raised hummocks. While total abundance of the major plant functional groups was altered, species composition and dominant species of vascular and non-vascular species within microforms was unaltered. Changes in vegetation and microtopography lead to differences in albedo, surface roughness, and surface moisture variability. However, total ET was only significantly different at the WET site. Transpiration losses accounted for the majority of ET, where LAI best explained differences in total ET between sites. Surface moisture availability did not appear to be limiting on moss evaporation, where lab results showed similar moisture retention capacity between microforms and sites, and where low surface bulk density was shown to be a strong controlling factor. Modelling results further suggested that, despite dry surface conditions, surface moisture availability for evaporation was often not limited based on several different parameterizations of peat hydraulic structure with depth.</p> / Doctor of Philosophy (PhD)

Global warming and extreme weather events have impacted the ability of Earth’s forest ecosystems to sequester atmospheric carbon dioxide. The full effects of these events on forest productivity, vulnerability, and the carbon cycle have not yet been fully assessed. One potentially fruitful approach is to explore past climate and forest growth patterns through tree ring records. These records may be used to explore how past environmental events may have impacted tree growth and provide insight into the functioning of forest ecosystems in the future. The stable isotope ratios (e.g. 13C to 12C) of tree ring material also provide additional information about tree growth trajectories and environmental stressors that may not be recognized in radial growth. In this study, tree ring and stable isotope records were measured and constructed to explore the dynamics of growth over the lifespan of plantation pine stands in southern Ontario. Tree ring growth records were used to determine the effects of climate and other environmental changes on radial growth. These records were constructed from two white pine (Pinus strobus L.) plantations established in 1939 (TP39) and 1974 (TP74) and one red pine plantation established in 1931 (TP31). Air temperature, precipitation, and drought indices were analyzed at monthly combinations to determine controls on growth. Temperature was consistently negatively correlated to growth, while precipitation and Palmer Drought Severity Index (PDSI) were consistently positively correlated to growth. The effectiveness of each climate variable to control ring growth differed between sites which may be related to stand age, stand density, and management factors. In both white pine plantations, inter-annual eddy-flux quantifications of gross ecosystem productivity (GEP) was found to be significantly related to tree ring growth over the overlapping period from 2003 to 2017. These relationships enabled an inter-annual estimate of GEP to be constructed for both growth chronologies over the period 1942 to 2017 for TP39 and 1981 to 2017 for TP74). Additionally, growth rings from three specimens in two different-age (14- and 77-year old) white pine plantation forests were analyzed for stable carbon isotope ratios to identify both short- and long-term variations in the physiological response to changing environmental conditions. Variations in δ13C time series from whole wood samples provided a potential record of intrinsic water use efficiency (iWUE) for these three trees. These iWUE records were compared to climate records and inter-annual eddy-flux quantifications of GEP and evapotranspiration (ET). Long-term iWUE was found to increase by 50 μmol mol–1 yr–1, with nearly all of the increase occurring as the tree shifted into active homeostasis of stomatal control in the late 1960s. Changes in time series of internal and external concentration of CO2 (ratio) also displayed a significant shift from first increasing and then decreasing trend. In the three wood samples, air temperature, ET, and GEP were found to be significantly, but inconsistently related to iWUE. The work of this thesis shows that tree ring properties are strongly related to key environmental variables such as temperature and drought stress in pine plantation forests in southern Ontario, Canada. Results also suggest that dendrochronology and isotope tracers are useful tools to be used to evaluate historical environmental impacts on growth in these different-age plantation stands. The background knowledge of climate drivers acting on tree ring growth and ring isotopic compositions over the forests’ history may be used to make informed management decisions to promote tree productivity in a changing climate in Eastern North America. / Thesis / Doctor of Philosophy (PhD) / The full effect of water availability and environmental factors on forest productivity, vulnerability, and the carbon cycle has not been fully assessed. Tree ring chronologies offer one approach to explore past climate and forest growth patterns. These records may be used to identify past environmental events may have impacted tree growth and provide insight into the functioning of forest ecosystems in the future. Additionally, stable carbon isotope ratios (δ13C, or 13C to 12C) of tree ring material provide information about tree intrinsic water use efficiency (iWUE) which is not captured in radial width measurements. Lastly, inter-annual eddy-flux quantifications record stand-level dynamics of ecosystem productivity. In this study, tree ring, stable isotopes, and eddy-flux records were measured and constructed to explore the dynamics of growth over the lifespan of plantation pine stands in southern Ontario. In all three techniques, records were constructed from three white pine (Pinus strobus L.) plantations established in 1939 (TP39), 1974 (TP74) and 2002 (TP02). Air temperature, precipitation, and drought indices were analyzed at monthly resolution to determine controls on water use and productivity. Temperature was consistently negatively correlated to growth, while precipitation and PDSI were consistently positively correlated to growth. Variations in the δ13C time series from whole wood samples also provided a record of iWUE. Long-term iWUE was found to increase by 50 μmol mol–1 yr–1, with nearly all of the increase occurring as the tree shifted into active homeostasis of stomatal control in the late 1960s. In all three white pine plantations, inter-annual eddy-flux quantifications ecosystem productivity were found to be significantly related to tree ring growth over the overlapping period from 2003 to 2017. These relationships enabled an inter-annual estimate of tree ring-inferred fluxes to be constructed for all three growth chronologies. These results suggest that dendrochronology and isotope tracers are useful tools to be used to evaluate historical environmental impacts on growth in these different-age plantation stands. The interrelationships of tree ring growth, ring isotopic compositions, and eddy-flux quantifications found here serve as useful background knowledge on which to base additional studies of forest climate change impacts.