Thesis (Ph. D.)--University of Chicago, Committee on Evolutionary Biology, June 2001. / Includes bibliographical references. Also available on the Internet.

We present results studying the distribution and properties of the diffuse dust in the Milky Way Galaxy using large optical surveys—specifically, the Sloan Digital Sky Survey (SDSS) and the Panoramic Survey Telescope and Rapid Response System 1 (Pan-STARRS1). This work has resulted in accurate measurements of dust reddening in regions of low extinction over large regions of sky. We present maps of reddening from dust covering the footprint of the SDSS, which covers one quarter of the sky. We present preliminary maps of dust covering the Pan-STARRS1 footprint, which covers three-quarters of the sky, including most of the plane of our Galaxy. We use these maps of dust to decisively exclude some simple parameterizations of dust extinction (Cardelli et al., 1989) in favor of others (Fitzpatrick, 1999). We show that the extinction predicted by the widely-used far-infrared dust map of Schlegel et al. (1998) is overestimated by 18%, and recalibrate that map using our extinction measurements. We further map variation in the properties of the dust, as indicated by variation in the amount of extinction relative to the amout of far-infrared dust extinction, and by variation in the ratio of dust extinction at different frequencies. We confirm these results by measuring reddening using two independent techniques and data sets, the SDSS photometry and spectroscopy. We further present the photometric calibration of the Pan-STARRS1 data—a necessary step to studying the dust with that ongoing survey. We achieve photometric precision unprecedented in a large optical survey, accurate to better than 1%. We additionally show the suitability of the calibrated photometry for studying the distribution of dust. Finally, we present preliminary three-dimensional maps of the dust in the Galaxy using our calibrated data from Pan-STARRS1. These maps will provide by far the most extensive information yet achieved about the three-dimensional distribution of extinction in the Galaxy. / Physics

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Phylogenetic diversity (PD) is a measure of species biodiversity quantified by how much of an evolutionary tree is spanned by a subset of species. In this thesis, we study optimization problems that aim to find species sets with maximum PD in different scenarios, and examine random extinction models under various assumptions to predict the PD of species that will still be present in the future. Optimizing PD with Dependencies is a combinatorial optimization problem in which species form an ecological network. Here, we are interested in selecting species sets of a given size that are ecologically viable and that maximize PD. The NP-hardness of this problem is proved and it is established which special cases of the problem are computationally easy and which are computationally hard. It is also shown that it is NP-complete to decide whether the feasible solution obtained by the greedy algorithm is optimal. We formulate the optimization problem as an integer linear program and find exact solutions to the largest food web currently in the empirical literature. In addition, we give a generalization of PD that can be used for example when we do not know the true evolutionary history. Based on this measure, an optimization problem is formulated. We discuss the complexity and the approximability properties of this problem. In the generalized field of bullets model (g-FOB), species are assumed to become extinct with possibly different probabilities, and extinction events are independent. We show that under this model the distribution of future phylogenetic diversity converges to a normal distribution as the number of species grows. When extinction probabilities are influenced by some binary character on the tree, the state-based field of bullets model (s-FOB) represents a more realistic picture. We compare the expected loss of PD under this model to that under the associated g-FOB model and find that the former is always greater than or equal to the latter. It is natural to further generalize the s-FOB model to allow more than one binary character to affect the extinction probabilities. The expected future PD obtained for the resulting trait-dependent field of bullets model (t-FOB) is compared to that for the associated g-FOB model and our previous result is generalized.

By performing a comparative analysis and using phylogenetic relationships of the Cervidaefamily this study aimed to address whether or not sexual selection may play a role in the extinctionof species by making species more vulnerable to extinction. The role of sexual selection in makingspecies more vulnerable to extinction is largely unexplored, and several factors such as ecologicaland life history traits may increase the risk of extinction.In all species of the family Cervidae (Gilbert et al. 2006, Geist 1998,Groves and Grubb2011,Meijaardand Groves2004,Price et al. 2005, Goss 1983) sexually selected characters plays amain role in determining species status and thus potentially their probability of extinction. In thisstudy the intensity of sexual selection (measured as sexual size dimorphism, antler size and matingsystem) and the rate of extinction (IUCN classification and anthropogenic effect) were counted asfactors to determine the role of sexual selection intensity in both species-rich and species-poorclades.By using the programme MESQUITE and phylogenetic trees, the results show an associationbetween species with larger body size and dimorphism, living in open habitats and having largerantler size expanded to more than three tines; such species are mostly non-territorial and formharems during the rutting season. The small species are territorial, live in closed habitats, aremonomorphic and have small antler size limited to two tines or less. Moreover species that aremore subjected to habitat degradation and anthropogenic effects tend to become smaller in size.Extinction risk for the species-rich clades with small sized, territorial and small antler sizedspecies is lower than for those consisting of species with larger antler size, larger body size, livingin open habitats and using harems as mating system.To sum up, the intensity of sexual selection in larger species in deer family put them in risk ofextinction; but on the other site, small species are more adapted to the environment by choosingdifferent strategy in mating system, and reducing antler and body size thus diminishing theextinction risk.

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The theory of “punctuated equilibrium” suggests that species evolve rapidly during or immediately upon speciation, “punctuating” long periods of little or no morphological evolution. Here I confirm that body size differences within clades of birds and mammals are best explained using a model of punctuated evolution. This allows me to suggest that rates of speciation and extinction are responsible for why there are more small mammals than large, as large mammals likely speciate and go extinct at a higher rate than small mammals, and hence undergo cladogenetic change more often. Likewise, mammals appear to evolve at a higher rate than birds, because mammals, as a whole, speciate and go extinct at a higher rate than birds. Furthermore I show that mass extinctions and competition, i.e. forms of natural selection, do not seem to explain differences in body size between species on a macroevolutionary scale. Taken together, these findings not only contradict the idea that apparently different rates of evolution are due to differential selection intensities, and emphasize the importance of the speciation process in evolution, but raise the intriguing question as to what limits evolution in established species. Here I suggest that phenotypic traits, dependent on one another for development and/or function may constrain evolution by exerting stabilizing selection from within the organism, as opposed to external environmental selection, which has been the main focus of evolutionary studies thus far. / Teorin om "punkterad jämvikt" säger att arter utvecklas snabbt under och omedelbart efter artbildning, vilket "punkterar" långa perioder med lite eller ingen morfologisk föränding. I den här avhandlingen visar jag att skillnader i kroppsstorlek inom klader (grupp med gemensam förfader) hos fåglar och däggdjur förklaras bäst när man använder en modell med punkterad evolution. Detta gör i sin tur att jag kan föreslå att hastigheten var med artbildning och utdöende sker, förklarar varför det finns fler små däggdjur än stora, eftersom stora däggdjur sannolikt bildar nya arter och dör ut med en högre hastighet än små däggdjur. Likaså förefaller däggdjur i sin helhet att evolvera med en högre hastighet än fåglar, detta eftersom däggdjur bildar nya arter och dör ut med en högre hastighet än fåglar. Dessutom visar jag att massutdöenden och konkurrens (naturlig selektion) inte verkar förklara skillnader mellan arter över makroevolutionära skalor (över geologisk tid). Sammantaget motsäger dessa resultat inte bara idén om att skenbart olika hastighet på evolution främst beror på skillnader i selektionstryck utan understryker också vikten av artbildningsprocessen som en viktig faktor som styr evolutionens hastighet. Dessutom leder dessa resultat till frågan om vad som begränsar evolutionen hos redan etablerade arter. Här föreslår jag att fenotypiska karaktärsdrag som är beroende av varandra för sin funktion och utveckling kan begränsa evolutionen genom att utöva stabiliserande selektion inifrån organismen, i motsats till selektion från den omgivande miljön vilket har varit fokus för de flesta evolutionära studier hittills.