For many native, imperiled salmonid species, the prioritization of recovery and conservation efforts hinges upon the identification of a species most limiting life stage. The early life-history stage can be a limiting life stage for fish, and given the importance of the reproductive stage to overall persistence, there is a need to better understand the spawning ecology and early life history of many salmonids. The Logan River, in northern Utah, contains one of the largest metapopulations of imperiled Bonneville cutthroat trout (BCT) throughout the Bonneville Basin. Little research has evaluated the temporal and spatial distribution of BCT spawning nor quantified their early life-history survival. In the summer of 2008, I documented the spawning ecology of BCT and quantified their early life-history survival via egg-to-fry survival field experiments in four tributaries to the Logan River. I observed considerable variability in the timing, magnitude, and duration of spawning between study streams, in part as a function of a variable, multi-peaked hydrograph. I also conducted egg-to-fry survival experiments using incubation boxes and hatchery-fertilized, eyed cutthroat embryos and installed these boxes throughout my study streams. I found that survival was extremely variable within and among my study streams. For example, the variation I observed in survival appeared to be a function of fine sediment loads. Lastly, I observed that in the Logan River the timing of greatest intensity of both stream side and in-stream anthropogenic activities (e.g., livestock grazing, horseback riding) overlaps directly with the spawning and early life stages of BCT. Using my estimates of early survival, I revised a four-stage matrix population model for BCT in order to evaluate the hypothetical effects of anthropogenic impact on rearing areas. I determined that population growth rates are sensitive to perturbation at the egg-to-fry and fry to age-1 stages, and if even a small number of redds are destroyed through habitat degradation, a high degree of immigration of reproductively mature BCT is required to maintain the near-term persistence of this population. Future conservation efforts for BCT should be prioritized to protect areas where land-use activities are high during the sensitive spawning and early life-stage periods.

The aim of the M.Sc. thesis was to verify possibility of weaning weatherfish larvae (Misgurnus fossilis) from the live food to the dry starter mixture using the method of co-feeding. The experiment included 3 control groups (starved control no feeding; negative control fed exclusively with dry starter mixture; positive control fed exclusively with live food) and 10 experimental groups with 5 different dates of termination of co-feeding period (at the age 13, 18, 23, 28 and 33 days post-hatching dPH) and different duration of co-feeding period (1 and 7 days). The experiment lasted from the 6 dPH, when mixed feeding was iniciated, until the age 48 dPH at the temperature of 17,8 +- 0,7 °C. The effects of termination and duration of co-feeding period upon continuous survival, morphometric and gravimetric characteristics, ratio of macrobiogenic elements and gross caloric value in somatic tissues of larvae/juveniles were evaluated. Continuous survival, morphometric and gravimetric characteristics and total content of carbon and nitrogen in somatic tissues of larvae/juveniles were increasing with extending dates of termination of co-feeding period. The rearing of weatherfish larvae was accompanied by the marked decline of survival in the period 13 20 dPH, regardless of selected diet regimes in individual groups. Within all fed groups, the worst results of continuous survival and growth were recorded in the negative control as well as groups with date of co-feeding period termination at age 13 dPH. All individuals in these groups died at age 41 dPH. At the end of the experiment, the highest values of continuous survival were achieved in the positive control as well as groups with dates of co-feeding period termination at age 23, 28 and 33 dPH, respectively. There was no significant statistical difference among these groups. Very good results in terms of morphometric and gravimetric characteristics were achieved in the groups with dates of co-feeding period termination at age 28 and 33 dPH, respectively. However, only in group with date of co-feeding period termination at age 33 dPH were achieved comparable values of morphometric characteristics with the positive control. The exception formed only values of the body height as well as dry and wet weights which were significantly higher in the positive control compared to other fed groups. The duration of the co-feeding period (either 1 or 7 days) did not affect any of the monitored characteristics. The results of the present thesis also show that the weatherfish fry best prospers on live food and, on the contrary, fry can not be reared using dry starter mixture as a sole food source. To sum up, among all tested groups that use co-feeding, only weaning of larvae with the date of co-feeding termination at age 33 dPH could be advised. In such condition the continuous survival rate as well as lenght growth reach comparable values with group exclusively fed by live food.

No description available.

The Atlantic cod (Gadus morhua L.) fishery is of great economic importance to the Faroese economy. There are two separately managed cod stocks around the Faroe Islands, the Faroe Plateau and the Faroe Bank cod. Both have experienced dramatic decreases in size and informed management decisions are vital for both stock viability and exploitation. The stocks are geographically isolated by an 800 m deep channel and water temperatures are on average 1 – 2 ºC higher on the Faroe Bank than on the Faroe Plateau. There are clear phenotypic differences between the stocks; in particular, the markedly higher growth rate for the Faroe Bank cod has caught public and scientific attention. There is continuing debate regarding the relative importance of genetics and environmental contributions to the contrasting phenotypes. Analyses of reproductive parameters (field data and experimental captive spawnings) as well as analyses of microsatellite and single nucleotide polymorphism (SNP) markers were undertaken to better resolve the issue. Field data as well as data from experimental captive spawnings provided evidence of reproductive differences between Faroe Plateau and Faroe Bank cod. Peak spawning occurred earlier on the Faroe Plateau than on the Faroe Bank and this difference in timing of spawning was maintained in captivity. In particular, differences in sizes of eggs (average diameters of 1.40 and 1.30 mm for Faroe Plateau and Faroe Bank cod eggs, respectively) and indirect evidence of greater volumes spawned by the Faroe Bank females suggested stock differences with respect to egg size – egg number trade-off. It was hypothesised that the strategy adopted by cod on the Faroe Bank, with a higher number of smaller eggs, evolved in response to a more hostile environment (bare seabed and higher exposure to predators) experienced by early life stages in this area. Experimental captive spawnings with Faroe Bank cod showed a large interfamily skew in survival rates of cod eggs and fry. Egg size was identified as a useful indicator of survival rates in the egg stage, but egg survival rates could not be used to predict viability in later developmental stages, thus highlighting the importance of employing some sort of genetic monitoring of cod fry to ensure sufficient family representation in the progeny. While no tank effect was evident concerning fry survival, a significant tank effect was identified concerning body sizes of fry. Microsatellite data were analysed using large sample sizes of Faroe Plateau and Faroe Bank cod with the Faroe Plateau divided into two locations, Faroe Plateau North-East and Faroe Plateau West (cod from each of the two were known to belong to separate spawning grounds). Two Norwegian coastal cod samples were included as outlier populations. While no genetic differentiation was detected between the two Faroe Plateau locations, these analyses revealed a detectable, albeit relatively modest, degree of genetic differentiation between cod from the Faroe Plateau and the Faroe Bank (FST = 0.0014 and 0.0018; DJost_EST = 0.0027 and 0.0048; P < 0.0001 and P < 0.001 for the Faroe Plateau North-East – Faroe Bank and the Faroe Plateau West – Faroe Bank comparisons). These values were several times smaller than those between Faroese and Norwegian coastal cod (pairwise FST and DJost_EST values in the range of 0.0061 – 0.0137 and 0.0158 – 0.0386, respectively). Despite recent reductions in census population sizes for Faroe Plateau and, particularly, Faroe Bank cod, genetic diversity estimates were comparable to the ones observed for Norwegian coastal cod and there was no evidence of significant genetic bottlenecks. Lastly, data for one of the markers (Gmo132) indicated genotype-dependent vertical distribution of cod (as investigated for Faroe Plateau North-East cod). Contrary to some previously published studies, analysis of SNPs of two candidate genes for adaptive divergence, the hemoglobin gene Hb-ß1 and the transferrin gene Tf1, failed to detect differentiation between samples of Faroe Plateau and Faroe Bank cod analysed in this thesis. Of 3533 novel SNPs simultaneously discovered and genotyped by restriction-site associated DNA (RAD) sequencing, 58 showed evidence of genetic differentiation between Faroe Plateau North-East and Faroe Bank cod (P < 0.05). No single locus was fixed for different alleles between Faroe Plateau and Faroe Bank cod. A set of eight informative SNPs (FST values between Faroe Plateau and Faroe Bank samples > 0.25; P < 0.0005) were selected for validation in larger samples, that included cod from both Faroe Plateau areas and the Faroe Bank as well as Norwegian coastal and White Sea cod. Six out of the eight loci amplified successfully with a PCR-based method and there was 100 % concordance between genotypes of individuals screened by both techniques. Due to ascertainment bias, the SNPs should only be applied with caution in a broader geographical context. Nonetheless, these SNPs did confirm the genetic substructure suggested for Faroese cod by microsatellite analyses. While no genetic differentiation was evident between the two Faroe Plateau locations, significant genetic differentiation was evident between Faroe Plateau and Faroe Bank cod at five of the SNPs (FST values in the range of 0.0383 – 0.1914). This panel of five SNPs could confidently be used to trace groups of Faroe Plateau and Faroe Bank cod to their population of origin. In conclusion, multiple lines of evidence demonstrate that Faroe Plateau and Faroe Bank cod are truly two genetically distinct populations. While the findings contribute to a broader understanding of the biology and the genetics of Faroe Plateau and Faroe Bank cod, the novel SNPs developed may provide a valuable resource for potential future demands of i.e. genetic stock identification methods.

<div>Following the 2010 Deepwater Horizon oil spill, extensive research has been conducted on the toxicity of oil and polycyclic aromatic hydrocarbons (PAHs) in the aquatic environment. The location and timing of the Deepwater Horizon surface slick coincided with the spawning seasons of many important pelagic and estuarine fish species. As such, there has been particular emphasis placed on the effects of PAHs on sensitive life history stages in fish, such as the embryonic and larval periods. Additionally, the spill occurred throughout the spring and summer months which, in estuaries, are marked by regular fluctuations in abiotic environmental factors such as dissolved oxygen, salinity, and temperature. Until recently, there has been little work done to elucidate the combined effects that PAHs from oil spills and adverse environmental conditions (hypoxia, increased salinity, and elevated temperatures).</div><div>Work presented in this dissertation uses next generation sequencing technology (RNA Seq) to determine differential gene expression in larval estuarine teleosts following exposure to adverse environmental conditions and PAHs. Downstream canonical pathway and toxicological function analysis were then applied to the identified differentially expressed genes (DEGs) to predict cardiotoxic responses at the organismal level. To verify the predicted responses, a phenotypic anchoring study was conducted and identified a cardiotoxic phenotype (pericardial edema) and reduced cardiac output in embryos exposed to oil. Finally, the mechano-genetic interplay governing the morphological development of the teleost heart was investigated and correlations between developmental gene expression and blood flow forces within the cardiovascular system were identified.</div>

No description available.