<p> The Roat&aacute;n Spiny-tailed Iguana (<i>Ctenosaura oedirhina </i>) is endemic to the 146-km² island of Roat&aacute;n, Honduras. Harvesting for consumption, fragmentation of habitat, and predation by domestic animals threaten this lizard. It is currently listed as Endangered by the International Union for Conservation of Nature (IUCN), as threatened by the Honduran government, and is on Appendix II of the Convention on International Trade in Endangered Species (CITES). This species has been geographically fragmented and genetically isolated into small subpopulations that are declining in density. With data gathered from use/availability surveys, resource selection functions were used to identify habitats and environmental variables associated with their presence. Results indicate that protection from harvesting is the most important factor in determining their distribution. These high-density populations are currently restricted to &sim;0.6 km². Organisms living in small, isolated populations with very restricted ranges are at higher risk of extirpation due</p><p> to various direct and indirect forces. Mark-recapture-resight surveys and distance sampling have been used to monitor the populations since 2010 and 2012 respectively. The data show that the high-density populations are declining. The current population size is estimated to be 4130-4860 individuals in 2015. A population viability analysis (PVA) was conducted to identify the most pressing threats and specific life history traits that are affecting this decline. The analysis estimates that if current trends persist, the species will be extinct in the wild in less than ten years. Adult mortality is a main factor and female mortality specifically characterizes this decline. In order for this species to persist over the next fifty years, adult mortality needs to be reduced by more than 50%. A lack of enforcement of the current laws results in the persistence of the main threat, poaching for consumption, thus altering the species distribution and causing high adult mortality. This is complicated by social customs and a lack of post primary education. Management changes could mitigate this threat and slow the population decline. Recommendations include an education campaign on the island, increased enforcement of the current laws, and breeding of <i>C. oedirhina in situ</i> and <i> ex situ</i> for release into the wild.</p>

Thesis (Ph.D.)--Drexel University, 2010. / Includes abstract and vita. Includes bibliographical references (leaves 206-237).

<p> Thirty-four percent of Earth&rsquo;s arable land has been converted to agricultural uses, and increased agricultural intensification has been correlated with contemporary decreases in avian abundance and functional diversity. Farm-scale biodiversity enhancement features such as native woody plant hedgerows have been planted in crop margins with the expectations of attracting beneficial predators and pollinators, and of improved pest control and pollination services in adjacent crops. Despite ongoing investment and perceived benefits of these types of enhancements for biodiversity, few evaluations have tested their effectiveness at increasing avian diversity. A growing body of research has quantified crop pest reduction by birds with indirect benefits for yield, yet few studies have evaluated whether farm-scale conservation activities improve effect sizes of these services. Further, whether or not crop margin habitats confer fitness benefits necessary for avian population viability (i.e., survival and reproduction) remains almost entirely unstudied. On each of these fronts, landscape effects can counteract or interact synergistically with the effects of local activities, and assessment of farmland habitat enhancement must be done with explicit reference to landscape context. I conducted field research in a system of extant woody hedgerows and semi-natural riparian habitat patches among farmlands of the Sacramento Valley of California&rsquo;s Central Valley, USA to investigate three questions. Does farm-scale biodiversity enhancement and retention of semi-natural landscape habitat 1) influence patterns in avian abundance and diversity, 2) increase the rate of pest reduction by birds in adjacent crops, and 3) provide quality habitat and confer fitness benefits for avian occupants? In Chapter 1, and with collaborators, I sampled birds and habitat characteristics in 111 crop margins and landscape buffers during two winter and breeding seasons. We found that margins with hedgerows, treelines, or remnant riparian habitat harbored 2&ndash;3 times as many bird species and 3&ndash;6 times greater abundance than bare or weedy margins. Margin habitat type interacted with distance from semi-natural woodlands; hedgerow or riparian margins further from woodlands harbored more bird species. In Chapter 2, I performed a sentinel prey exclosure experiment in walnuts to compare pest cocoon predation rates by birds in 10 orchards with and 10 orchards without woody vegetation patches in their margins, and I characterized semi-natural cover within landscape buffers. Avian predator richness and abundance was greater in habitat orchard margins than in bare margins, and birds were confirmed predators of 23&plusmn;29% pest cocoons per orchard (range 0 &ndash; 80%). Pest predation rates did not increase with the presence of woody margin habitat. Instead, predation rates increased with the increasing size of orchard trees, avian predator abundance, and percentage of semi-natural cover in the landscape. In Chapter 3, I used a suite of environmental, body condition, and population measures in long-distance migratory <i>Zonotrichia</i> sparrows to quantify habitat quality at hedgerows and natural reserves along a gradient of connectivity and landscape habitat amount. Abundance and within-winter apparent survival was highest in connected hedgerows and natural reserves with the most woodland landscape cover. Isolated hedgerows were of poor quality for first year Gambel&rsquo;s white-crowned sparrows <i>(Z. leucophrys gambelii)</i> and the differences in within-winter apparent survival between first year and adult birds decreased significantly with increasing woodland landscape cover. The combined results suggest that farm scale habitat enhancement can be beneficial for birds in terms of local abundance and diversity, and within-winter apparent survival if connected to and among a sufficient percentage of other similar habitats. Farm scale enhancements can also be beneficial to growers by increasing the number of avian predators of crop pests. Yet, growers appear to benefit most by having crops located in landscapes with greater percentages of semi-natural landscape cover, where avian predation rates of crop pests were highest.</p><p>

<p> &ldquo;Biogeographic affinity&rdquo; describes the similarities in the flora and fauna of one location compared to those of another location, resulting from their common evolutionary history and/or their contemporary connectivity (Loveland and Merchant 2004). The existence of the biogeographic affinity hypothesis allows the hierarchical classification of regions into faunal, floristic or other biogeographic provinces. Additionally, the latitudinal biodiversity gradient (LBG; Brown and Lomolino 1998) is normally illustrated by a diverse tropical fauna at low latitudes and decreasing species richness with increasing latitude. Here, I compare the relative influences of biogeographic affinity and the primary ecological gradients of the southern Colorado Plateau in the Grand Canyon ecoregion (GCE, Table 2; elevation, litter accumulation, and anthropogenic influences) on the distribution and abundance of land mollusks. I test four specific null hypotheses: (1) Biogeographic affinity does not influence the distribution of GCE land mollusks, (2) GCE land mollusk species and assemblages are uniformly distributed across elevation, analogously reflecting the absence of biogeographic affinity, (3) Habitat patch size (spring area) does not influence GCE land mollusk species richness and (4) The GCE land mollusk assemblage is not strongly influenced by microhabitat factors that are independent of elevation impacts. </p><p> To test my hypotheses, I used classic and contemporary literature and museum collections to build a comprehensive species list for the Grand Canyon ecoregion. This list included spatial (location, elevation) and ecological (biogeographic affinity) data to test hypothesis 1 (proportional representation) and hypothesis 2 (neotropical to boreal distribution. across elevation). I also used randomly sampled terrestrial mollusks in three elevation zones at 19 paired spring and matrix habitat sites, while also recording environmental data on leaf litter depth, isopod presence or absence, grazing presence or absence at each sample, canopy cover and spring area at each site. These data were used to test hypothesis 3 (spring area-species diversity relationships) and 4 (measured site- specific independent variables will predict species diversity). </p><p> The results of this analyses show: 1. The GCE land mollusk fauna is not equally distributed across 7 North American Biogeographic Provinces. Instead, the GCE is overrepresented by boreal, alpine and temperate species. 2. This two-dimensional pattern of overrepresentation was preserved across (3-dimensional) elevational gradients within the GCE. Communities were at least 84% dissimilar between elevation zones, with New- World temperate and wide-ranging circumpolar species being the dominant drivers the mollusk community composition even at low elevation sites. 3. Shannon-Weiner diversity (supporting the Latitudinal Biodiversity Hypothesis) and leaf litter depth (productivity) within springs decreased with increasing elevation. 4. Among the measured physical (spring/matrix, litter depth, canopy cover, species-area) and anthropogenic (isopods, grazing) factors, elevation was the only one found to predict species community composition. </p><p> These results indicate that while springs in the southwest USA are presumed to be relictual habitats, temperate land mollusks still possess an apparent advantage over neotropical species even at low elevation springs, where they are more abundant and diverse. These data support the Latitudinal Biodiversity Gradient (LBG) in a novel and unusual way, where low elevation sites are the most diverse, but are characterized by wide-ranging temperate and boreal species, with significant community compositional change across elevation.</p><p>

Despite the long time since the introduction and spread of pine plantations in southern hemisphere countries there has been no study of the suitability of this exotic and novel type of vegetation on the native avifauna. This thesis aims to add understanding of this habitat replacement and its effects on the forest bird community. This research included a series of studies to assess the quality of mature pine plantations for the forest avifauna in comparison to what is in native forests. The first two studies determine the effects on the forest bird community of the fragmentation and replacement of native forest in a gradient of substitution. The results showed a direct relationship between level of substitution and loss of functional diversity, and that fragmentation predicts the bird assemblage in pine stands. The next two studies used data from an intensive ringing season to assess differences in the condition of populations inhabiting each habitat. Birds, in general, were found in better condition in native fragments than in pine plantations. Moreover, a despotic distribution was determined for a migrant species and a gradient in habitat quality was found in relation to proximity to native forest. The next two studies used information from a nest-box survey set in a gradient of sites with substitution of native forest. The results showed that the type of forest cover and their proportion in the landscape may affect the breeding performance of some species. Finally, in the last study I evaluated the foraging niche of bird species in each habitat. Compared with native forest, niche breath reduced while the niche overlap increased in pine plantations for most species. The results suggest that pine plantations are poor quality habitat for the bird community and that the substitution of native forests increases selective pressure.

Thesis (Ph.D.) -- University of Adelaide, School of Earth and Environmental Sciences, Discipline of Environmental Biology, 2004. / "August 2004" Includes bibliography. Also available electronically.

Thesis (Ph.D.) -- University of Adelaide, School of Earth and Environmental Sciences, Discipline of Environmental Biology, 2004. / "August 2004" Includes bibliographical references. Also available in print.

This thesis examines the ecology, parasites and pathogens of three insectivorous bat species in Wytham Woods, Oxfordshire; Myotis nattereri (Natterer’s bat), M. daubentonii (Daubenton’s bat) and Plecotus auritus (Brown long-eared bat). The population structure was assessed by monitoring associations between ringed individuals, utilising recent advances in social network analysis. Populations of both M. daubentonii and M. nattereri were found to subdivide into tight-knit social groups roosting within small areas of a continuous woodland (average minimum roost home range of 0.23km2 and 0.17km2 respectively). If this population structure is a general attribute of these species it may make them more sensitive to small scale habitat change than previously thought and has implications for how diseases may spread through the population. M. daubentonii had a strong preference for roosts close to water, away from woodland edge and in areas with an easterly aspect. The factors driving roost choice in M. nattereri and P. auritus remain elusive. The segregation of M. daubentonii into bachelor and nursery colonies was not a result of the exclusion of males from roosts close to water by females, or variation in microclimate preferences between the sexes, as was predicted. Body condition (weight/forearm length) was correlated with host characteristics including age and reproductive status, and weather variables. Astroviruses and Coronaviruses, which have characteristics typical of zoonotic viruses, were identified in UK bat species for the first time. Coronaviruses identified formed species-specific clades while Astroviruses were highly diverse. Though not closely related to human viruses these are potential zoonotic diseases of the future. Models of Coronavirus and ectoparasite distribution suggest individual attributes (e.g. sex and age) and population structure (e.g. the formation of nursery and bachelor colonies) are important predictors of parasite and pathogen prevalence. This study characterises a system that offers many opportunities for future research including studies of sociality, disease modelling and conservation management.

High Nature Value farmland (HNVf) refers to traditional agricultural landscapes which support high levels of biodiversity. HNVf is declining across Europe, through both intensification and abandonment, raising concerns about the conservation of species associated with it. One argument is that such HNV species are better described as being dependent on disturbance, and that management practices on HNVf mimics the effects of natural disturbance processes such as herbivory, fire, severe weather and flooding, which are often suppressed across much of Europe. If true, one innovative approach for conserving HNV species would be to restore natural disturbance processes, as advocated by the "rewilding" conservation movement. I set out to explore the feasibility of this approach, focusing on flooding. Restoration of flood regimes is receiving growing attention, not only for its biodiversity benefits but also to reduce the risk of flooding in downstream urban areas, improve water quality, and increase the amenity value of rivers. I carried out four linked studies. Each followed a broadly similar approach: I selected sampling locations both in floodplain areas and comparable surrounding farmland, I surveyed birds and butterflies as indicator taxa of biodiversity, I carried out habitat mapping, and I estimated disturbance through both field measurements and remotely sensed data. My first study was around the Pripyat river in Ukraine, which has a large floodplain that has had minimal human intervention. I found that several, but not all, HNV species had higher population densities in the floodplain than in the surrounding HNV farmland, and several more had approximately equal population densities in the two habitats. This suggested intact flood regimes can retain some species that are elsewhere restricted to HNVf. My second study was around the river Rhône, France, where a restoration project has increased flow in floodplain channels and improved their connectivity with the main channel. I compared restored and non-restored segments of floodplain channel, as well as farmland and other habitats. While I found significant differences in population densitiesbetween habitat types, few species showed significant differences between restored and non-restored segments, suggesting that restoration had only limited ecological impacts on the wider landscape. My third study investigated a more ambitious restoration project which has reconnected a large area of floodplain to the river Peene in Germany. I found many HNV species had equal or higher population densities in the restored floodplain than in the surrounding unrestored farmland. This demonstrates that it is possible to restore the effect of natural flood disturbance on habitats and species. However, not all HNV species benefitted from flood-disturbed habitats, so clearly other conservation interventions need to be considered. For the final study, pooling data from all three sites I looked for associations between species' traits and environmental variables. My aim was to identify traits which predict species' responses to the environment, and hence which species are most likely to benefit from restoration. However, I did not find any significant associations in my data. In conclusion, I demonstrated that flood-disturbed habitats are suitable for many species traditionally associated with HNV farmland, and further that restoring flood disturbance processes can recreate those habitats. As such, reconnecting rivers and restoring floodplains would be a useful conservation intervention for species threatened by the abandonment or intensification of HNV farmland in Europe. However, other species did not benefit, and require other conservation interventions, perhaps other forms of rewilding, or continued incentivisation of favourable farming practices.

There is currently little knowledge about the dynamics of invertebrates in Australian viticultural ecosystems. This study was conducted in Coonawarra vineyards over three seasons (years) and has focused on identifying natural enemies, their seasonal phenology, multiple species interactions, and potential for the suppression of the pest lepidopteran Epiphyas postvittana (Tortricidae). The work presented in this thesis shows that endemic natural enemies have far greater potential to control E. postvittana than has been realised. An initial survey identified a diverse and abundant range of potential natural enemies. Of these, the species most likely to attack E. postvittana include a predatory mite Anystis baccarum and a number of hymenopteran parasitoids. The most abundant parasitoid in the vineyards was a braconid, Dolichogenidea tasmanica. Understanding the characteristic behaviour of parasitoids in response to host density can help to gauge their potential for pest suppression. The results of large-scale field experiments showed that the response of D. tasmanica to the density of E. postvittana was inversely density-dependent, and that parasitism was consistently higher in Cabernet Sauvignon compared with Chardonnay varieties. Despite the fact that interactions among multiple species of natural enemies can increase or decrease pest suppression, particularly when they share a common prey/host, few multispecies interactions have been investigated. Laboratory studies identified a novel interaction between the predatory mite A. baccarum an abundant predator in the vine canopy, the parasitoid D. tasmanica and host E. postvittana larvae. Although A. baccarum readily ate E. postvittana eggs and free roaming larvae, they could not access larva in their silk leaf rolls. However, the addition of D. tasmanica significantly increased predation of E. postvittana larvae, by altering the behaviour of host larvae and increasing their vulnerability to the mite. Experiments conducted at a landscape level in the Coonawarra showed that D. tasmanica was also present in habitat other than vineyards including native vegetation. However, it was not present in highly disturbed habitats. Although the exact mechanism for this remains unknown, results indicate that viticultural practices and resources in the surrounding landscape can influence the presence of parasitoids. Together, the findings presented in this thesis make a significant contribution towards developing sustainable pest management in Australian viticulture. / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1320930 / Thesis (Ph.D.) -- University of Adelaide, School of Earth and Environmental Sciences, 2008