Cette thèse s'appuie sur la spectroscopie de NiH établie à la fin des années 1980 et au début des années 1990, principalement par le groupe du Pr. R. W. Field au MIT. Les mesures expérimentales ont amélioré de manière significative les travaux antérieurs, tant en spectroscopie en champ nul qu'en spectroscopie Zeeman. Le radical NiH est obtenu avec une source à décharge à température ambiante (310 K). Les radicaux formés dans la décharge sont excités par un laser continu à colorant et étudiés soit en spectroscopie d'excitation laser soit en fluorescence dispersée. Un circuit magnétique à aimants permanents (NdFeB) fournit un champ magnétique statique (0.4 – 0.9 T). En champ nul, les spectres de fluorescence par transformée de Fourier ont élargi les observations de l'état électronique fondamental jusqu'à 6000 cm-1, pour 58NiH et 60NiH. Les énergies sont modélisées avec un Hamiltonien effectif obtenu à partir du formalisme du modèle du 3d9 supermultiplet développé par le groupe de Field. Les mesures Zeeman se sont principalement concentrées sur l'étude des états Ω=3/2. Les facteurs de Landé effectifs ont été déterminés pour chaque niveau ro-vibrationnel pour les états de basse énergie et les états excités de 58NiH. L'inhabituelle dépendance en J des facteurs de Landé obtenus pour les états de basse énergie est expliquée par le modèle du supermultiplet, quantifiant alors l'ampleur des mélanges spin-orbite présents dans les états inférieurs. Les transitions étudiées ont un intérêt astrophysique depuis que plusieurs transitions d'hydrure métallique ont été observées dans les spectres d'étoiles froides et les taches solaires. / This thesis builds on the spectroscopy of NiH established in the late 1980s and early 1990s, principally by Pr. R. W. Field's group at MIT. Experimental measurements significantly extend earlier work, both in field-free and Zeeman spectroscopy. The NiH radical is obtained with a room-temperature metal-hydride discharge source (310 K). Radicals formed in the discharge are excited by a single-mode, continuous wave dye laser and can be conveniently studied either in laser excitation or in dispersed fluorescence. A magnetic circuit with permanent magnets (NdFeB) provides a static magnetic field (0.4 – 0.9 T). In the field-free regime, Fourier transform resolved fluorescence spectra have extended the range of observations up to 6000 cm-1 above v=0 of the electronic ground state, for 58NiH and 60NiH. Energies are modeled with an effective Hamiltonien matrix using the 3d9 supermultiplet formalism developed by Field's group. Zeeman measurements have focused mainly on the range of states studied by including transitions involving the Ω=3/2 excited states. Effective Landé factors have been determined for individual ro-vibrational levels of low-lying and excited states of 58NiH. The unusual J-dependence of the Landé factors obtained for low-lying states are explained by the 3d9 supermultiplet model, quantifying the extent of spin-orbit mixing present in the lower states. The transitions are of potential astrophysical interest since several transition metal hydrides have been observed in the spectra of cool stars and sunspots.

The present thesis shows how versatile and important the field of gas-phase spectroscopy under supersonic expansion conditions can be to understand fundamental intermolecular and intramolecular interactions. We have employed spectroscopic techniques over a very broad range spanning from microwave (2-18 GHz), through infrared (2600-4000 cm-1) and ultraviolet (350-250 nm) region, studying therotational, vibrational and electronic properties,respectively. These techniques use either chirped-pulse based (broadband rotational spectroscopy) or laser based methods (vibrational and electronic spectroscopy), and their usage depends on the types of information of particular interest and the chemical system requirements of specific techniques. The analytes are brought into the gas phase and supersonically cooled to their zero-point vibrational level to perform rotational and vibrationallyresolved IR/UV spectroscopy, including conformer-specific techniques. The variety of small organic molecular systemsstudied include phenyl-containing hydrocarbons, water containing clusters, heteroatom containing organic molecules with and without phenyl ring, fused aromatic molecules, bichromophoric molecules and pyrolysis reaction intermediates. Apart from gaining invaluable fundamental knowledge of the various interactions, we also observe interesting quantum-physical phenomena like tunneling and large amplitude motions that provide further insight into the molecular world.

A Emodina (EMH) é uma das antraquinonas mais abundantes na natureza. Essa molécula vem sendo largamente usada como material de estudo científico por apresentar diversas atividades farmacológicas, tais como antiviral, antitumoral, antifungal, digestiva e outras. É conhecido que a Emodina em solução aquosa alcalina pode sofrer mais de um processo de desprotonação, apresentando-se na forma desprotonada, EM-, após a primeira desprotonação. Nesta tese de doutorado estudamos as propriedades estruturais e eletrônicas da molécula Emodina em meio solvente e em bicamadas lipídicas a fim de caracterizar as propriedades relacionadas à espectroscopia UV-Vis, à reatividade e à termodinâmica dessa molécula nesses ambientes. Realizamos cálculos quânticos com a Emodina em vácuo e em meio solvente, onde consideramos todos os possíveis sítios de desprotonação. Como resultados desses cálculos, identificamos os sítios da primeira, segunda e terceira desprotonação. Calculamos o pKa1 da Emodina em água e o pK*a1 em metanol através de simulações computacionais com o método Monte Carlo e cálculos quânticos, com o solvente descrito com o modelo contínuo polarizável. Nossos melhores valores para o pKa1 da Emodina determinados nesses solventes foram 8.4±0.5 e 10.3±1.5, que estão em boa concordância com os valores experimentais, (pKa1=8.0±0.2 e pK*a1=11.1±0.1) obtidos nesta tese para Emodina em água e metanol, respectivamente. Adicionalmente realizamos simulações com Dinâmica Molecular com as espécies EMH e EM- em bicamada lipídica de DMPC, para investigar a nível atômico as interações dessas espécies com a bicamada e determinar as posições preferenciais dessas espécies nesse ambiente anfifílico. Os resultados dessas simulações mostraram que as espécies EMH e EM- ficam inseridas na bicamada, na região polar dos lipídios, próximos aos gliceróis. Esses resultados corroboram as nossas medidas do espectro de absorção dessas espécies em bicamada lipídica, onde mostramos de forma qualitativa, que ambas as espécies ficam inseridas na bicamada, na região das cabeças polares dos lipídios. A análise das propriedades estruturais da bicamada na vizinhança das espécies da Emodina como área por lipídio e densidade eletrônica dos lipídios, mostrou que o efeito da EM- na estrutura da bicamada lipídica é maior do que o da EMH. Esses resultados corroboram as nossas medidas de DSC(Differential Scanning Calorimetry) das espécies da Emodina na bicamada. / Emodin (EMH) is one of the most abundant anthraquinone derivatives found in nature. This molecule has been used widely as research material, due to its biological and pharmacological activities such as antiviral, anticancer, antifungal, digestive and antibacterial activities. It is known that Emodin in alkaline aqueous solution can undergo more than one deprotonation, leading to the specie EM- in the first deprotonation process. In this PhD thesis, we studied the structural and electronic properties of this molecule in several solvents and lipid bilayers, in order to characterize the properties related to UV-Vis absorption spectroscopy, reactivity and thermodynamics of this molecule in these environments. Performing quantum mechanics (QM) calculations for all possible deprotonation sites and tautomeric isomers of Emodin in vacuum and in water, we identified the sites of the first, second and third deprotonations. We calculated the pKa1 of Emodin in water and pK*a1 in methanol with free energy perturbation method, implemented in the Monte Carlo simulation, and with QM calculations, where the solvent was treated as a polarizable continuum medium. Our best values for pKa1 of Emodin in these solvents were 8.4±0.5 and 10.3±1.5, which are in very good agreement with the experimental values obtained in this thesis pKa1=8.0±0.2 and pK*a1=11.1±0.1, for water and methanol, respectively. Additionally, we performed molecular dynamics simulations of both species in fully hydrated lipid bilayers of DMPC to investigate at atomic detail the molecular mechanism of the interaction of these species with lipid membrane and its preferred positions in this amphiphilic environment. As results of these simulations, we obtained that both species of Emodin have a strong tendency to insert into the lipid bilayer, remaining near the glycerol group of DMPC. These results corroborate our measured absorption spectra of these species in the bilayer, which qualitatively showed that both species are within the bilayer, inserted in the lipid headgroup region. Our results also show that the effect of EM- specie in the lipid bilayer structure is stronger than the EMH, which corroborate our DSC(Differential Scanning Calorimetry) measurements.

A Emodina (EMH) é uma das antraquinonas mais abundantes na natureza. Essa molécula vem sendo largamente usada como material de estudo científico por apresentar diversas atividades farmacológicas, tais como antiviral, antitumoral, antifungal, digestiva e outras. É conhecido que a Emodina em solução aquosa alcalina pode sofrer mais de um processo de desprotonação, apresentando-se na forma desprotonada, EM-, após a primeira desprotonação. Nesta tese de doutorado estudamos as propriedades estruturais e eletrônicas da molécula Emodina em meio solvente e em bicamadas lipídicas a fim de caracterizar as propriedades relacionadas à espectroscopia UV-Vis, à reatividade e à termodinâmica dessa molécula nesses ambientes. Realizamos cálculos quânticos com a Emodina em vácuo e em meio solvente, onde consideramos todos os possíveis sítios de desprotonação. Como resultados desses cálculos, identificamos os sítios da primeira, segunda e terceira desprotonação. Calculamos o pKa1 da Emodina em água e o pK*a1 em metanol através de simulações computacionais com o método Monte Carlo e cálculos quânticos, com o solvente descrito com o modelo contínuo polarizável. Nossos melhores valores para o pKa1 da Emodina determinados nesses solventes foram 8.4±0.5 e 10.3±1.5, que estão em boa concordância com os valores experimentais, (pKa1=8.0±0.2 e pK*a1=11.1±0.1) obtidos nesta tese para Emodina em água e metanol, respectivamente. Adicionalmente realizamos simulações com Dinâmica Molecular com as espécies EMH e EM- em bicamada lipídica de DMPC, para investigar a nível atômico as interações dessas espécies com a bicamada e determinar as posições preferenciais dessas espécies nesse ambiente anfifílico. Os resultados dessas simulações mostraram que as espécies EMH e EM- ficam inseridas na bicamada, na região polar dos lipídios, próximos aos gliceróis. Esses resultados corroboram as nossas medidas do espectro de absorção dessas espécies em bicamada lipídica, onde mostramos de forma qualitativa, que ambas as espécies ficam inseridas na bicamada, na região das cabeças polares dos lipídios. A análise das propriedades estruturais da bicamada na vizinhança das espécies da Emodina como área por lipídio e densidade eletrônica dos lipídios, mostrou que o efeito da EM- na estrutura da bicamada lipídica é maior do que o da EMH. Esses resultados corroboram as nossas medidas de DSC(Differential Scanning Calorimetry) das espécies da Emodina na bicamada. / Emodin (EMH) is one of the most abundant anthraquinone derivatives found in nature. This molecule has been used widely as research material, due to its biological and pharmacological activities such as antiviral, anticancer, antifungal, digestive and antibacterial activities. It is known that Emodin in alkaline aqueous solution can undergo more than one deprotonation, leading to the specie EM- in the first deprotonation process. In this PhD thesis, we studied the structural and electronic properties of this molecule in several solvents and lipid bilayers, in order to characterize the properties related to UV-Vis absorption spectroscopy, reactivity and thermodynamics of this molecule in these environments. Performing quantum mechanics (QM) calculations for all possible deprotonation sites and tautomeric isomers of Emodin in vacuum and in water, we identified the sites of the first, second and third deprotonations. We calculated the pKa1 of Emodin in water and pK*a1 in methanol with free energy perturbation method, implemented in the Monte Carlo simulation, and with QM calculations, where the solvent was treated as a polarizable continuum medium. Our best values for pKa1 of Emodin in these solvents were 8.4±0.5 and 10.3±1.5, which are in very good agreement with the experimental values obtained in this thesis pKa1=8.0±0.2 and pK*a1=11.1±0.1, for water and methanol, respectively. Additionally, we performed molecular dynamics simulations of both species in fully hydrated lipid bilayers of DMPC to investigate at atomic detail the molecular mechanism of the interaction of these species with lipid membrane and its preferred positions in this amphiphilic environment. As results of these simulations, we obtained that both species of Emodin have a strong tendency to insert into the lipid bilayer, remaining near the glycerol group of DMPC. These results corroborate our measured absorption spectra of these species in the bilayer, which qualitatively showed that both species are within the bilayer, inserted in the lipid headgroup region. Our results also show that the effect of EM- specie in the lipid bilayer structure is stronger than the EMH, which corroborate our DSC(Differential Scanning Calorimetry) measurements.

Ce travail porte sur le développement de nouvelles méthodes de caractérisation in-situ basées sur les spectroscopies électroniques XPS et MM-EPES associées à des calculs théoriques obtenus grâce à des simulations Monte-Carlo afin de réaliser des études quantitatives fines et précises. La première partie de ce travail, a été consacrée à l’analyse quantitative de signaux XPS et MM-EPES. Pour cela, dans un premier temps, la fonction de correction de l’analyseur hémisphérique (HSA) qui est une combinaison de l’aire d’analyse (A) et de la transmission (T) a été déterminée en utilisant une nouvelle méthode basée sur des images élastiques. Pour la première fois, la dépendance de A en énergie cinétique des électrons a été mise en évidence. Avec l’utilisation de cette nouvelle fonction, une méthode de caractérisation in situ basée sur la modélisation théorique des signaux XPS et MM-EPES a été développée. Cette méthode a permis d’étudier le dépôt d’un film d’or sur un substrat de silicium oxydé et a montré une grande précision dans le cas de très faibles quantités de matière déposée (< 2 nm) alors que les techniques microscopiques classiques se sont révélées inefficaces. La deuxième partie a porté sur le développement d’une nouvelle technique d’imagerie in-situ appelé MM-EPEM qui consiste à scanner la surface par un faisceau d’électrons et de collecter les électrons rétrodiffusés élastiquement afin de construire une image en intensité de la surface. Les étapes d’obtention des images MM-EPEM et les procédures d’exploitation de ces dernières ont été décrites et optimisées. Ensuite, cette technique a été utilisée pour l’étude de l’état de surface de dépôts d’or sur différents substrats. Cette technique s’avère être non destructive et très sensible aux éléments présents à la surface. Et elle permet de déterminer la cartographie chimique et la nano-organisation de la surface. / This thesis focuses on the development of new in-situ methods of characterization based on the electron spectroscopies (XPS and EPES) coupled with theoretical calculations obtained through Monte-Carlo simulations in order to perform very precise quantitative studies. The first part of this thesis was devoted to quantitative studies of XPS and MM-EPES measurements. Firstly, the correction function of a hemispherical analyzer (HSA) which is a combination of the analysis area (A) and the transmission (T) was determined using a new method based on the elastic images. For the first time, the dependence of A on the kinetic energy of electrons was highlighted. Using this function, an in-situ method based on the combination of XPS and MM-EPES modeling was setting up. This method was used to determine the organization of gold film deposed on oxidized silicon substrate. Measurements show that this method is able to determine surface parameters when the microscopy techniques do not give any information in the case of a small quantity of gold deposit (less than 2 nm). The second part of this work was directed towards developing a new generation of microscopy called MM-EPEM which is based on the detection of elastic electrons. The stages required to obtain these images are well described and optimized here. The MM-EPEM images processing was used to study gold growth on different substrates. This technique is a non-destructive method and allows the operator to construct chemical tomography and to determine the nano-organization of the surface.