Exopolysaccharides are essential for the establishment of the symbiosis between Sinorhizobium meliloti and Medicago sativa (alfalfa). The ExoS/ChvI two-component regulatory system is known as a regulator of succinoglycan production but the genes that are directly regulated by ChvI have not been determined. Difficulty isolating exoS and chvI null mutants has prompted the suggestion that these genes are essential for S. meliloti viability. We have successfully isolated exoS and chvI null mutants using a merodiploid facilitated strategy. We present evidence that the S. meliloti ExoS/ChvI two-component regulatory system is essential for symbiosis with alfalfa. Phenotypic analyses of exoS and chvI null mutant strains demonstrate that ExoS/ChvI controls both succinoglycan and galactoglucan production and is required for growth on over 21 different carbon sources. These new findings suggest that the ExoS/ChvI regulatory targets might not be the exo genes that are specific for succinoglycan biosynthesis but rather genes that have common influence on both succinoglycan and galactoglucan production. To obtain further insight into the nature of the ChvI regulon, we obtained a purified His•Tag-ChvI and used it to perform modified electrophoretic mobility shift assays. These assays were done using genomic DNA and were followed by cloning of DNA fragments having the highest affinity for ChvI. Sequencing of these fragments revealed that ChvI has a diverse regulon, it affects transcription of genes encoding enzymes that are involved in different pathways. Transcriptional gene fusion assays confirmed that ChvI is important for the activation of the transcription of the msbA2 operon, as well as repression of the transcription of the rhizobactin 1021 operon and genes SMc00262-61. ChvI-regulation of genes that are part of the connected thiamine and histidine biosynthesis pathways suggest that ChvI could act in a concerted manner to avoid limitation of important intermediates in these pathways. This study presents for the first time genes directly regulated by ChvI and this includes none of the exo genes. This work opens new avenues in the understanding of the global regulatory role of the symbiotically important ExoS/ChvI two-component regulatory system.

Well dispersed aqueous suspensions containing single-walled carbon nanotubes (SWCNTs) from bulk powders were prepared with surfactant and without surfactant by acid functionalization. SWCNT coated electrodes were then prepared from the SWCNT aqueous suspensions using various methods to create uniform nanoporous networks of SWCNTs on various substrates and stainless steel (SST) current collectors for use as ultracapacitor electrodes. Drop coating, high voltage electro-spraying (HVES), inkjet printing, and electrophoretic deposition (EPD) methods were evaluated. Optical and scanning electron microscope images were used to evaluate the SWCNT dispersion quality of the various electrodes. Ultimately an EPD process was established which reliably produced uniform SWCNT nanoporous networks on SST substrates. The prepared SWCNT coated electrodes were characterized using cyclic voltammetry and their capacitance was determined. A correlation between extended EPD processing times, EPD processing temperatures, and electrode capacitance was quantified. Optimum EPD processing occurs where linear capacitance gains were observed for processing times less than 10 minutes. At processing times between 10 – 60 minutes a non-linear relationship demonstrated diminishing capacitance gains with extended EPD processing times. Likewise, optimum EPD processing occurs when the processing temperature of the SWCNT suspension is raised above room temperature. At processing temperatures from 45°C to 60°C an increase in capacitance was observed over the room temperature (22°C) electrodes processed for the same durations. Conversely, for processing temperatures less than room temperature, at 5°C, a decrease in capacitance was observed. It was also observed that SWCNT electrodes processed at 60°C processing temperatures resulted in 4 times the capacitance of 5°C electrodes for the same processing times, when the durations were 8 minutes or less. For samples with raised processing temperatures the time dependent capacitance gains were observed to be significantly diminished beyond 10 minute processing times. The SWCNT network thickness was also correlated to EPD processing temperature and capacitance. A linear relationship was identified between the SWCNT network thickness and the capacitance of the electrode. It was also observed that elevated processing temperatures increase the EPD deposition rate of SWCNTs, produce thicker SWCNT networks, and thus create electrodes with higher capacitance than electrodes processed at lower EPD processing temperatures. EPD of SWCNTs was demonstrated in this work to be an effective method for the fabrication of SWCNT ultracapacitor electrodes. Characterization of the process determined that optimal EPD processing occurs within the first 10 minutes of processing time and that elevated processing temperatures yield higher SWCNT deposition rates and higher capacitance values. In this work the addition of SWCNT nanoporous networks to SST electrodes resulted in increases in capacitance of up to 398 times the capacitance of the uncoated SST electrodes yielding a single 1cm2 electrode with a capacitance of 91mF and representing an estimated specific capacitance for the processed SWCNT material of 45.78F/g.

Electrochemical detection of metals can be done at polycrystalline gold ultramicroelectrodes using repetitive cyclic voltammetry (RCV), a detection method sharing some similarities with anodic stripping voltammetry (ASV). Each cycle of the potential waveform for RCV involves application of a negative preconcentration potential (for 50 to 300 ms) followed by a cyclic voltammetry (CV) scan at 20 to 1000 V/s. The response due to the metals is evident at potentials negative of the region for oxide formation in the resulting CVs. Metals are deposited at the Au surface by underpotential deposition (UPD) processes. Any metal that can be analyzed by RCV could potentially be quantified using UPD-ASV at Au (rather than by ASV at Hg). The UPD kinetics of Pb and Cu at polycrystalline Au were examined by setting kinetic parameters (rate constant, symmetry factor, and electrosorption valency) within a simulation program used to generate simulated CVs. Reasonably good agreement between experimental and simulated CVs was possible using the simulation, with the same kinetic parameters used to generate simulated CVs to match experimental CVs over a range of sweep rates for each system. Using this method, the following rate constants (k) were estimated: for UPD of Cu in H2SO4 and HClO4, ks ~ 36000 s−1 and 11000 s−1, respectively, and for UPD of Pb in H2SO4, ks ~ 400000 s−1. <p> Repetitive cyclic voltammetry was applied to the detection of metals separated by capillary electrophoresis. Separation of Tl+, Cd2+, Cu2+, Pb2+, Zn2+, Ni2+, Co2+ and Mn2+ was demonstrated in 0.01 mol/L acetic acid and 0.01 mol/L ammonium acetate(pH ~ 4.6) using RCV. While stacking is commonly exploited for sensitivity enhancement during injection, it was shown that detection-end stacking is also useful. A novel technique named electrophoretic extraction (EE) was developed for analysis of particle-containing solutions (e.g. soil extracts or other colloidal suspensions). EE involves application of backpressure during CE to prevent particles from entering the separation capillary: the applied pressure is regulated so analyte ions enter the capillary and migrate to the detector, whereas other particles are prevented from entering the capillary. The feasibility of this approach was demonstrated.

Thesis (M.S.)--University of Alabama at Birmingham, 2009. / Title from PDF title page (viewed Jan. 29, 2010). Includes bibliographical references (p. 66-70).

No description available.

The potential use of 3D aluminium nanorod structures as current collectors and negative electrodes for 3D Li-ion micro-batteries was studied based on the use of relatively simple and cost-effective electrochemical and sol-gel deposition techniques. Aluminium rod structures were synthesised by galvanostatic electrodeposition using commercial porous membranes as templates. It was shown that the use of a short (i.e., 50 ms long) potential pulse (i.e., -0.9 V vs. Al3+/Al) applied prior to a pulsed current electrochemical deposition gave rise to homogeneous deposits with more even rod heights.  Electrophoretic and sol-gel deposition of TiO2 on the same substrates were also studied. The use of the sol-gel technique successfully resulted in a thin coating of amorphous TiO2 on the Al nanorod current collector, but with relatively small discharge capacities due to the amorphous character of the deposits. Electrophoretic deposition was, however, successful only on 2D substrates. Anodisation of titanium was used to prepare 3D TiO2 nanotube electrodes, with a nanotube length of 9 um and wall thickness of 50 nm. The electrodes displayed high and stable discharge capacities of 460 µAh/cm2 at a 0.1 C rate upon prolonged cycling with good rate capability. The 3D aluminium nanorod structures were tested as negative electrodes for Li-ion cells and the observed capacity fading was assigned to trapping of LiAl alloy inside the aluminium electrode caused by the diffusion of lithium into the electrode, rather than to pulverisation of the aluminium rods. The capacity fading effect could, however, be eliminated by decreasing the oxidation potential limit from 3.0 to 1.0 V vs. Li+/Li. A model for the alloying and dealloying of lithium with aluminium was also proposed. Finally, a proof-of-concept for a full 3D Li-ion micro-battery with electrodes of different geometries was demonstrated. The cell comprised a positive electrode, based on LiFePO4 deposited on a carbon foam current collector, with an area gain factor an order of magnitude larger than that for the Al nanorod negative electrode. This concept facilitates the balancing of 3D Li-ion cells as the positive electrode materials generally have significant lower specific energy densities than the negative electrodes.

Single molecule studies of enzymes have revealed that nominally identical individual enzyme molecules are functionally heterogeneous. Different individual molecules exhibit different catalytic rates under identical conditions, and individual enzyme molecules show fluctuating rates over broad timescales. The structural basis and the biological sources for such heterogeneity remains poorly understood. Herein, studies are presented of the β-galactosidase from Escherichia coli, using capillary electrophoresis with laser-induced fluorescence (CE-LIF), to investigate the sources of catalytic heterogeneity at the single molecule level. Limited proteolysis as a possible source for single molecule heterogeneity, and for the changes in activity of a population of individual molecules over time, was investigated by inducing enzyme expression in two E.coli strains in the presence of a broad spectrum of protease inhibitors. The effect of protease inhibitors was found to be limited. β-Galactosidase was expressed from a lacZ linear template from two different E. coli strains using an in vitro protein expression system to determine if in vitro synthesized enzyme was identical to its in vivo counterpart. In vitro synthesized enzyme was found to be less active than in vivo sources. The differences were attributed to deficient N-terminal methionine removal and the higher rates of translation error associated with in vitro protein synthesis. Single molecule separations revealed that individual molecules of β-galactosidase were electrophoretically distinct, and that the electrophoretic heterogeneity was independent of source of enzyme, method of measurement, or of capillary coating. Electrophoretic modeling indicated that slight variation of hydrodynamic radius is the most likely source of electrophoretic mobility heterogeneity. The extent of single molecule catalytic variation was reduced in a mutant with a hyperaccurate translation phenotype implying that translation error is a source of the heterogeneity. Streptomycin-induced translation error reduced average activity, but did not lead to an increase in catalytic heterogeneity. No relationship between translation error and electrophoretic heterogeneity was observed. A novel CE-LIF assay was developed for the continuous monitoring of the catalytic activity and electrophoretic mobility of individual β-galactosidase molecules. Thermally-induced catalytic fluctuations were observed suggesting that individual enzyme molecules were capable of conformational fluctuations that supported different catalytic rates.

Single molecule studies of enzymes have revealed that nominally identical individual enzyme molecules are functionally heterogeneous. Different individual molecules exhibit different catalytic rates under identical conditions, and individual enzyme molecules show fluctuating rates over broad timescales. The structural basis and the biological sources for such heterogeneity remains poorly understood. Herein, studies are presented of the β-galactosidase from Escherichia coli, using capillary electrophoresis with laser-induced fluorescence (CE-LIF), to investigate the sources of catalytic heterogeneity at the single molecule level. Limited proteolysis as a possible source for single molecule heterogeneity, and for the changes in activity of a population of individual molecules over time, was investigated by inducing enzyme expression in two E.coli strains in the presence of a broad spectrum of protease inhibitors. The effect of protease inhibitors was found to be limited. β-Galactosidase was expressed from a lacZ linear template from two different E. coli strains using an in vitro protein expression system to determine if in vitro synthesized enzyme was identical to its in vivo counterpart. In vitro synthesized enzyme was found to be less active than in vivo sources. The differences were attributed to deficient N-terminal methionine removal and the higher rates of translation error associated with in vitro protein synthesis. Single molecule separations revealed that individual molecules of β-galactosidase were electrophoretically distinct, and that the electrophoretic heterogeneity was independent of source of enzyme, method of measurement, or of capillary coating. Electrophoretic modeling indicated that slight variation of hydrodynamic radius is the most likely source of electrophoretic mobility heterogeneity. The extent of single molecule catalytic variation was reduced in a mutant with a hyperaccurate translation phenotype implying that translation error is a source of the heterogeneity. Streptomycin-induced translation error reduced average activity, but did not lead to an increase in catalytic heterogeneity. No relationship between translation error and electrophoretic heterogeneity was observed. A novel CE-LIF assay was developed for the continuous monitoring of the catalytic activity and electrophoretic mobility of individual β-galactosidase molecules. Thermally-induced catalytic fluctuations were observed suggesting that individual enzyme molecules were capable of conformational fluctuations that supported different catalytic rates.

Well dispersed aqueous suspensions containing single-walled carbon nanotubes (SWCNTs) from bulk powders were prepared with surfactant and without surfactant by acid functionalization. SWCNT coated electrodes were then prepared from the SWCNT aqueous suspensions using various methods to create uniform nanoporous networks of SWCNTs on various substrates and stainless steel (SST) current collectors for use as ultracapacitor electrodes. Drop coating, high voltage electro-spraying (HVES), inkjet printing, and electrophoretic deposition (EPD) methods were evaluated. Optical and scanning electron microscope images were used to evaluate the SWCNT dispersion quality of the various electrodes. Ultimately an EPD process was established which reliably produced uniform SWCNT nanoporous networks on SST substrates. The prepared SWCNT coated electrodes were characterized using cyclic voltammetry and their capacitance was determined. A correlation between extended EPD processing times, EPD processing temperatures, and electrode capacitance was quantified. Optimum EPD processing occurs where linear capacitance gains were observed for processing times less than 10 minutes. At processing times between 10 – 60 minutes a non-linear relationship demonstrated diminishing capacitance gains with extended EPD processing times. Likewise, optimum EPD processing occurs when the processing temperature of the SWCNT suspension is raised above room temperature. At processing temperatures from 45°C to 60°C an increase in capacitance was observed over the room temperature (22°C) electrodes processed for the same durations. Conversely, for processing temperatures less than room temperature, at 5°C, a decrease in capacitance was observed. It was also observed that SWCNT electrodes processed at 60°C processing temperatures resulted in 4 times the capacitance of 5°C electrodes for the same processing times, when the durations were 8 minutes or less. For samples with raised processing temperatures the time dependent capacitance gains were observed to be significantly diminished beyond 10 minute processing times. The SWCNT network thickness was also correlated to EPD processing temperature and capacitance. A linear relationship was identified between the SWCNT network thickness and the capacitance of the electrode. It was also observed that elevated processing temperatures increase the EPD deposition rate of SWCNTs, produce thicker SWCNT networks, and thus create electrodes with higher capacitance than electrodes processed at lower EPD processing temperatures. EPD of SWCNTs was demonstrated in this work to be an effective method for the fabrication of SWCNT ultracapacitor electrodes. Characterization of the process determined that optimal EPD processing occurs within the first 10 minutes of processing time and that elevated processing temperatures yield higher SWCNT deposition rates and higher capacitance values. In this work the addition of SWCNT nanoporous networks to SST electrodes resulted in increases in capacitance of up to 398 times the capacitance of the uncoated SST electrodes yielding a single 1cm2 electrode with a capacitance of 91mF and representing an estimated specific capacitance for the processed SWCNT material of 45.78F/g.

Membrane-bound proteins and charged lipids are separated based on their charge-to-size ratio by electrophoretic-electroosmotic focusing (EEF) method on supported lipid bilayers (SLBs). EEF uses opposing electrophoretic and electroosmotic forces to focus and separate proteins and lipids into narrow bands from an initially homogeneous mixture. Membrane-associated species were focused into specific positions within the SLB in a highly repeatable fashion. The steady-state focusing positions of the proteins could be predicted and controlled by tuning experimental conditions, such as buffer pH, ionic strength, electric field and temperature. Careful tuning of the variables should enable one to separate mixtures of membrane proteins with only subtle differences. The EEF technique was found to be an effective way to separate protein mixtures with low initial concentrations and it overcame diffusive peak broadening problem. A "SLB differentiation" post-separation SLB treatment method was also developed by using magnetic particles to rapidly slice the whole SLB into many small patches after electrophoretic separation, while keeping the majority of materials on surface and avoiding the use of chemical reactions. Label-free detection techniques were also developed based on EEF on SLBs. First, a new separation based label-free detection method was developed based on the change of focusing position of fluorescently labeled ligands. This technique is capable of simultaneous detecting multiple protein competitive binding on the same ligand on SLBs. Low concentration protein can be detected in the presence of interfering proteins and high concentration of BSA. The fluorescent ligands were moved to different focusing positions in a charged SLB patch by different binding proteins. Both free ligand and protein bound ligand concentrations were obtained. Therefore, both protein identity and quantity information were obtained simultaneously. Second, the focusing position of fluorescent biomarkers on SLB was used to monitor the phospholipase D catalyzed hydrolysis of phosphatidylcholine (PC) to form phosphatidic acid (PA), which is involved with the change of charge on the phospholipids. The focusing position of fluorescent membrane-bound biomarker in the EEF experiment is directly determined by the negative charge density on SLB. Other enzyme reactions involved with the change of phospholipids charge can be monitored in a label-free fashion in a similar way.