Boechera is a large genus of flowering plants whose taxa are found primarily in North America. Boechera vivariensis (S.L. Welsh) W.A. Weber (the Park rockcress) is restricted to the Uintah Basin on Weber sandstone substrates in the vicinity of Dinosaur National Monument and Blue Mountain. The nomenclature of Park rockcress is significantly impacted by the discovery that the type collections of the taxon represent a rare, apomictic diploid resulting from the hybridization between B. thompsonii and an undescribed sexual diploid (to be called Boechera caeruleamontana sp. nov. Allphin and Windham). As a result, greater information is needed regarding how B. vivariensis and B. caeruleamontana. are distributed geographically in the region of Dinosaur National Monument and surrounding areas. Thus, we performed genetic analyses on leaf samples taken from over 50 individuals at known sites of B. vivariensis throughout its geographic range. Individuals from each site were also compared morphologically. We also compared associated plant communities at each site and characterized the soils. In our thorough sampling, we did not pick up B. vivariensis. All individuals sampled belonged to B. caeruleamontana, suggesting that most individuals previously assigned to B. vivariensis, are actually representative of B. caeruleamonanta. Populations of B. caeruleamontana were genetically diverse compared to other Boechera species, most likely indicative of its insect pollination strategy. However, all populations had lower heterozygosity than expected based upon Hardy-Weinberg expectations. Reproductive and genetic data indicated that populations are showing signs of inbreeding. The population at Jones Hole Fish Hatchery was most unique genetically, morphologically, and reproductively.

[Truncated abstract] The malleefowl (Leipoa ocellata) is a large, ground-dwelling bird that is listed as threatened in all states of Australia in which it occurs. Its range encompasses much of southern Australia; however, much of it has been cleared for agriculture. Malleefowl are thought to have suffered substantial decline owing to multiple threats that include habitat loss, predation from exotic predators, grazing of habitat by introduced herbivores and fire - common threats in the decline of many Australian vertebrate species. The malleefowl has an unmistakeable appearance, unique biology, and widespread distribution across Australia. Consequently, it has been the focus of much scientific and community interest. In the Western Australian wheatbelt, community groups are working to conserve the species and have been actively collecting data on its distribution for over 15 years. The vast majority of these data are presence-only and have been collected in an opportunistic manner but, combined with long-term data from government agencies and museums spanning over 150 years, they present a significant opportunity to inform ecological questions relevant to the conservation of the species. The purpose of this study was to answer key ecological questions regarding the distribution, status and habitat preferences of malleefowl using unstructured occurrence records supplemented by reliable absences derived from Bird Atlas data sets and targeted surveys. Malleefowl in the Western Australian wheatbelt were used as a case study to illustrate: 1) how the decline of a species can be quantified and causes of that decline identified; and 2) how threats can be identified and responses to threats explored. I used bioclimatic modelling to define and explore variation within the climatic niche of the Malleefowl across Australia. '...' This thesis provides substantial additional knowledge about the ecology, distribution and status of malleefowl in Western Australia. It also illustrates how opportunistic and unstructured data can be augmented to investigate key aspects of a species' ecology. Despite the limitations of these data, which primarily relate to variation in observer effort across time and space, they can provide important outcomes that may not be achieved using standard survey and data collection techniques. The utility of opportunistic data is greatest in situations where the species: is recognisable and easily observed; is relatively sedentary; and occurs within a landscape containing consistent land use and habitat types. The approaches used in this study could be applied by researchers to situations where community interest exists for species with these attributes. At a national scale, the malleefowl is predicted to decline by at least 20% over the next three generations. The findings of this thesis suggest that the future for the species in the Western Australian wheatbelt may not be as dire as predicted elsewhere within its range, owing largely to the easing and cessation of threatening processes (e.g. land clearing, grazing of habitat by livestock) and the ability of the species to occupy a variety of habitat types. Despite this perceived security, some caution must be exercised until there is a more complete knowledge of the impact of fox predation and reduced rainfall due to climate change on malleefowl populations. Furthermore, the status of the species beyond the agricultural landscapes in Western Australia requires closer examination.

[No abstract supplied]

The research field of genetics provides useful tools to investigate the biology of species that are difficult to observe and study and are especially valuable in guiding the conservation of endangered species. The Chatham Island Tāiko (Tchāik, Pterodroma magentae) is the world’s most endangered seabird with an estimated population size of just 120-150 birds, including only 8-15 breeding pairs. This thesis used genetic techniques to investigate aspects of Tāiko biology and relationships in order to aid Tāiko conservation. The mitochondrial cytochrome b gene and duplicated regions of domain I of the mitochondrial control region were DNA sequenced in almost the entire known Tāiko population. The level of genetic variation revealed in Tāiko was unexpectedly high considering endangered species typically exhibit low genetic diversity. Sequencing of ancient DNA from subfossil Tāiko bones allowed an investigation of the past level of genetic variation and the species’ previous geographic distribution. A large proportion of the genetic diversity of the extinct Tāiko populations was retained in the remnant population. However, genetic variation in Tāiko chicks was low, thus genetic diversity in the population could be lost in just a few generations. There are many nonbreeding Tāiko so DNA sexing was used to examine sex ratios in the population. Almost all unpaired birds were male, which signified a potential Allee effect (i.e. that a reduced density of potential mates is decreasing population productivity). Further understanding of the Tāiko mating system and behaviour was obtained by parentage, sibship and pairwise relatedness analyses of genotypes at eight microsatellite DNA loci. It is important that Tāiko are found so they can be protected from introduced predators. The results of mitochondrial DNA sequencing and microsatellite DNA genotyping indicated that there are likely to be more Tāiko breeding in undiscovered areas. Analysis of philopatry using both mitochondrial and nuclear markers can assist conservation by the identification of areas to search for these undiscovered individuals. Tāiko may have once and could still be found on islands near South America since DNA sequencing showed the Magenta Petrel type specimen (collected in 1867 in the South Pacific Ocean) is a Tāiko.

Loss of indigenous biodiversity continues in New Zealand. Despite admirable goals in the NZBS 2000 to the contrary, efforts at improved biodiversity conservation have been insufficient to halt loss of significant amounts of indigenous forest and wildlife habitat. Increasing numbers of native species are moving towards critically endangered and extinction. Whatever we are doing in New Zealand, it is not effective enough. The aim of this study is to firstly identify factors contributing to the failure, “to halt the decline of indigenous biodiversity” in New Zealand and to then consider opportunities to overcome these barriers. In considering opportunities, this study then reviews the emerging discipline of landscape ecology as an answer to, at least, some of those factors and the recurring calls from New Zealand ecologists for a more integrated and holistic approach to biodiversity conservation. Recent advances in the planning framework and particularly provisions for biodiversity conservation in England are explored as a model of practical application of landscape ecological principles to land-use planning. From this review, the study proposes a new ‘LEEP’ model for strategic biodiversity conservation that produces a regional-scale spatial conservation map and accompanying policy and implementation guide. Together they provide an integrated and holistic approach to restoring or creating functional landscapes that also recognises and provides for human activities and development. Application of the LEEP model is demonstrated through a case study of the Wellington region. Benefits and potential uses of the map and policy outputs are canvassed. Interviews with leading New Zealand and international ecologists provide an assessment of the current status of landscape ecology and interviewees also act as an expert ‘test panel’ against which the Wellington maps and guides produced from the ‘LEEP’ model are assessed. Finally, suggestions are provided for development of the new model and future research needs towards fuller and more effective implementation of this approach to biodiversity conservation in the New Zealand context.

The continued existence of New Zealand’s critically endangered and endemic black stilt or kakï (Himantopus novaezelandiae) relies on an intensive captive management programme. While this is successful at rearing large numbers of birds for release to the wild, poor survivability of these birds is limiting significant increases in the wild population. Predation and starvation are suspected to be the most common causes of death in released birds, but underlying contributing factors to these mortalities have not been fully evaluated. This research investigates the possible contribution of gastrointestinal (GI) helminth burdens and suboptimal digestive organ development to the high mortality rates of released kakï. Emphasis is placed on evaluating the methods used to assess the importance of these factors and to make informed recommendations for future management. The efficacy of the anthelmintic regime used for kakï was assessed by dosing half of the 80 captive birds with praziquantel (PZQ) prior to release in 2007. Faecal samples were collected before and after anthelmintic treatment, and before and after release to the wild. Post mortem worm counts were conducted on 11 birds that died following release and historical worm count records dating back to 1997 were accessed. The main findings were: PZQ had high efficacy against trematodes; treatment did not prevent re-infection; birds were exposed to helminths at release site; and there was no advantage of treatment for survival. Overall, the results suggest that anthelmintic treatment is an unnecessary cost. Consequently, recommendations were made to cease anthelmintic treatment or reduce its intensity, continue health screening, and incorporate annual efficacy testing to monitor the emergence of anthelmintic resistance. The reliability of faecal screening for GI helminths was evaluated. Faecal egg counts (FECs) were found to be poor indicators of worm burden. The two modified sedimentation methods used to detect trematodes provided relatively low egg recovery rates. Trematode egg shedding varied between days but not by hour of the day or temperature. The collection and analysis of pooled faecal samples proved to be more cost and time-effective than samples from individual birds and the larger masses collected resulted in greater sensitivity. In conclusion, faecal analysis of pooled samples is a useful qualitative indicator of helminth presence or absence but is quantitatively unreliable. In order to assess the importance of digestive organ development to captive-reared and released kak?, the digestive organs of healthy and emaciated captive, released and wild Himantopus sp. were compared. Captive and released kak? had generally smaller digestive organs than wild birds, released birds did not increase digestive organ size to match the high fibre wild diet, and emaciated birds did not have atrophied organs. However, the greatest mortality rates occur soon after release, while the birds were still being supplementary fed. These results suggest that reduced digestive efficiency is probably not contributing significantly to mortality rates and the direct impacts of the translocation are probably greater risk factors. The continued provision of supplementary food to released birds and an increased focus on habitat enhancement and predator control at release sites were recommended. The reliability of comparing fresh and formalin fixed Himantopus sp. gut specimens was evaluated. Significant differences in fresh and formalin fixed organ dry masses and variation in preserved organ lengths indicate that this variation should be considered in future studies. In conclusion, current management practices appear to be successful in ensuring that GI helminths and reduced digestive efficiency do not significantly lower the survivorship of captive-reared and released kakï. There is a need for further research into developing a more direct physiological assessment of the impacts of GI helminths and gut morphology as well as considering the role that starvation may have on poor survivability.

The continued existence of New Zealand’s critically endangered and endemic black stilt or kakï (Himantopus novaezelandiae) relies on an intensive captive management programme. While this is successful at rearing large numbers of birds for release to the wild, poor survivability of these birds is limiting significant increases in the wild population. Predation and starvation are suspected to be the most common causes of death in released birds, but underlying contributing factors to these mortalities have not been fully evaluated. This research investigates the possible contribution of gastrointestinal (GI) helminth burdens and suboptimal digestive organ development to the high mortality rates of released kakï. Emphasis is placed on evaluating the methods used to assess the importance of these factors and to make informed recommendations for future management. The efficacy of the anthelmintic regime used for kakï was assessed by dosing half of the 80 captive birds with praziquantel (PZQ) prior to release in 2007. Faecal samples were collected before and after anthelmintic treatment, and before and after release to the wild. Post mortem worm counts were conducted on 11 birds that died following release and historical worm count records dating back to 1997 were accessed. The main findings were: PZQ had high efficacy against trematodes; treatment did not prevent re-infection; birds were exposed to helminths at release site; and there was no advantage of treatment for survival. Overall, the results suggest that anthelmintic treatment is an unnecessary cost. Consequently, recommendations were made to cease anthelmintic treatment or reduce its intensity, continue health screening, and incorporate annual efficacy testing to monitor the emergence of anthelmintic resistance. The reliability of faecal screening for GI helminths was evaluated. Faecal egg counts (FECs) were found to be poor indicators of worm burden. The two modified sedimentation methods used to detect trematodes provided relatively low egg recovery rates. Trematode egg shedding varied between days but not by hour of the day or temperature. The collection and analysis of pooled faecal samples proved to be more cost and time-effective than samples from individual birds and the larger masses collected resulted in greater sensitivity. In conclusion, faecal analysis of pooled samples is a useful qualitative indicator of helminth presence or absence but is quantitatively unreliable. In order to assess the importance of digestive organ development to captive-reared and released kak?, the digestive organs of healthy and emaciated captive, released and wild Himantopus sp. were compared. Captive and released kak? had generally smaller digestive organs than wild birds, released birds did not increase digestive organ size to match the high fibre wild diet, and emaciated birds did not have atrophied organs. However, the greatest mortality rates occur soon after release, while the birds were still being supplementary fed. These results suggest that reduced digestive efficiency is probably not contributing significantly to mortality rates and the direct impacts of the translocation are probably greater risk factors. The continued provision of supplementary food to released birds and an increased focus on habitat enhancement and predator control at release sites were recommended. The reliability of comparing fresh and formalin fixed Himantopus sp. gut specimens was evaluated. Significant differences in fresh and formalin fixed organ dry masses and variation in preserved organ lengths indicate that this variation should be considered in future studies. In conclusion, current management practices appear to be successful in ensuring that GI helminths and reduced digestive efficiency do not significantly lower the survivorship of captive-reared and released kakï. There is a need for further research into developing a more direct physiological assessment of the impacts of GI helminths and gut morphology as well as considering the role that starvation may have on poor survivability.

Listed as federally-endangered in 1990, the Lower Keys marsh rabbit (LKMR, Sylvilagus palustris hefneri) exists as a metapopulation in patches of wetland habitat in Florida’s Lower Keys. This study sought to address 2 priority actions identified by the LKMR Recovery Team: (1) monitoring of populations and (2) reintroduction. Monitoring the distribution and status of LKMR populations is critical for targeting future management actions. Informal transects for rabbit fecal pellets were used to survey habitat patches documented in1988–1995 surveys and to identify additional patches of occupied and potential habitat. Next, a buffer was created around patches to help managers account for uncertainty in rabbit movements and to identify groups of patches that might function as local populations. Surveys included 228 patches of occupied and potential habitat, 102 of which were occupied by rabbits. Patches were arranged in 56 occupied and 88 potential populations. Surveys revealed new patches of both occupied and potential habitat. Considering only areas included in 1988–1995 surveys, however, revealed a net decrease in the number of occupied patches. Many of the recently extirpated populations, which tended to occupy the periphery of larger islands or small neighboring islands, were unlikely to be recolonized without human intervention. Reintroduction provides a means of artificially recolonizing potential habitat. Two pilot reintroductions were conducted to evaluate this conservation strategy for the species. The second reintroduction was postponed, but the first effort met all criteria for short-term success, including survival comparable to a control group, fidelity to release sites, and evidence of reproduction. There are a limited number of potential source populations for translocations. Future efforts should consider using in-situ captive breeding to prevent potential long-term impacts to these populations. Few potential release sites exhibited suitable habitat quality and landscape context. Thus, for reintroduction to be more widely-applied for this species, it must be part of a comprehensive management plan involving land acquisition, control of secondary impacts from development, and habitat restoration and enhancement.

Brown-headed cowbird (Molothrus ater) parasitism on the endangered black-capped vireo (Vireo atricapilla) is a management concern. Management for black-capped vireos in east-central Texas has focused on habitat restoration through vegetation modification. Loss of productivity due to parasitism, however, may limit the potential habitat restoration in restoring black-capped vireo populations. I investigated the relationships between frequency of parasitism on black-capped and white-eyed (V. griseus) vireos and characteristics of the neighboring avian assemblage to identify avian characteristics useful for predicting expected frequency of parasitism. I located and monitored vireo nests in March–July 2006 to determine frequency of cowbird parasitism on the 2 vireo species on 6 study sites on private land in east-central Texas. I conducted 100-m-radius circular-plot point count surveys on study sites from 1 April– 31 June 2006 to identify neighboring avian assemblages. All black-capped vireo nests (n = 20) and 81% of white-eyed vireo nests (n = 27) were parasitized. Species richness, species evenness, cumulative bird abundance, and cowbird host abundance did not differ significantly among study sites. Parasitism frequency was positively correlated with the number of cowbirds detected (r2 = 0.673, P= 0.045). Parasitism frequency was negatively correlated with abundance (r2 = 0.687, P = 0.042) and proportion of (r2 = 0.692, P = 0.040) of black-and-white warblers (Mniotilta varia), known cowbird hosts. I did not find a relationship between parasitism frequency and abundance of other cowbird hosts. The relationship between black-andwhite warbler abundance and parasitism frequency may reflect an interaction between parasitism and the vegetation characteristics associated with black-and-white warblers, suggesting the need for future study of the relationships between parasitism frequency and vegetation characteristics in the study region. The frequency of parasitism I observed suggests that cowbird control may be an important management tool if management objectives in the study region continue to include recovery of black-capped vireo populations. Number of cowbirds may be a reasonable predictor of expected parasitism frequency in an area, which may be useful to land managers in selecting areas for implementation of cowbird control.

Listed as federally-endangered in 1990, the Lower Keys marsh rabbit (LKMR, Sylvilagus palustris hefneri) exists as a metapopulation in patches of wetland habitat in Florida’s Lower Keys. This study sought to address 2 priority actions identified by the LKMR Recovery Team: (1) monitoring of populations and (2) reintroduction. Monitoring the distribution and status of LKMR populations is critical for targeting future management actions. Informal transects for rabbit fecal pellets were used to survey habitat patches documented in1988–1995 surveys and to identify additional patches of occupied and potential habitat. Next, a buffer was created around patches to help managers account for uncertainty in rabbit movements and to identify groups of patches that might function as local populations. Surveys included 228 patches of occupied and potential habitat, 102 of which were occupied by rabbits. Patches were arranged in 56 occupied and 88 potential populations. Surveys revealed new patches of both occupied and potential habitat. Considering only areas included in 1988–1995 surveys, however, revealed a net decrease in the number of occupied patches. Many of the recently extirpated populations, which tended to occupy the periphery of larger islands or small neighboring islands, were unlikely to be recolonized without human intervention. Reintroduction provides a means of artificially recolonizing potential habitat. Two pilot reintroductions were conducted to evaluate this conservation strategy for the species. The second reintroduction was postponed, but the first effort met all criteria for short-term success, including survival comparable to a control group, fidelity to release sites, and evidence of reproduction. There are a limited number of potential source populations for translocations. Future efforts should consider using in-situ captive breeding to prevent potential long-term impacts to these populations. Few potential release sites exhibited suitable habitat quality and landscape context. Thus, for reintroduction to be more widely-applied for this species, it must be part of a comprehensive management plan involving land acquisition, control of secondary impacts from development, and habitat restoration and enhancement.