The interaction between molecules is essential in a wide range of biological processes. A detailed knowledge of these interactions is necessary for understanding these processes. Among the systems that involve important interactions is the immune system. NMR spectroscopy has a large number of spectral parameters that were used in this work to study antibody-antigen interactions. These same parameters were also used to begin a structural analysis of a medium-sized protein, neurophysin, that has important interactions with neurohormones, and served here as a model antigen. A set of ligands differing in size and charge was designed and used to probe the binding site of anti-phosphocholine antibodies. These ligands ranged from small organic species to medium sized proteins. Amino acids, peptides and proteins were homogeneously linked to phenyl phosphocholine and analyzed by NMR techniques. Transferred nuclear Overhauser effect measurements were used to determine the conformation of bound ligands. The conformational change observed in some ligands was explained as either due to the antibody selecting one conformation that already exists, or the antibody binding inducing a conformational change. Titration data and detailed NMR analysis showed a more rigid M3C65 antibody fragment upon binding. In summary, with eight examples of ligands and four examples of antibodies studied by NMR, a spectrum of effects was seen, including a lock-and-key model and limited local induced fit. The contribution of the carrier molecule to antibody binding was in restricting the conformation of the ligand. Bigger ligands that are expected to be more immunogenic, showed less binding avidity as determined by immunological assays. Fluorinated ligands were synthesized to determine the kinetics of binding using 19F NMR spectra. Higher concentration of a fragment of the antibody M3C65 was analyzed to determine assignments of some residues in the combining site of the antibody. High resolution NMR techniques were used to assign resonances in neurophysin. The physiological role of neurophysin includes hormone storage and stabilization of oxytocin and vasopressin against proteolytic degradation within the posterior pituitary. Neurophysin is a 10 KD protein that dimerizes at high concentrations needed for NMR studies. An organic cosolvent was used to lower the dimerization constant, and hence inrease the spectral resolution. This permitted sequence-specific assignments that were then used to identify residues in the neurophysin-hormone binding site. Chemical shift differences and conformational changes were observed for the residues glutamate 47 and leucine 50. The 3₁₀ helix was further stabilized towards a more ideal helix upon hormone-analog peptide binding. Some of the residues contributing to the monomer-monomer interface were also assigned. Dimerization ill1duced chemical shift differences and conformational changes were observed for phenylalanine 35, threonine 38, and alanine 69. Tyrosine: 49 and phenylalanine 22 were affected but to a lesser extent. One characteristic of neurophysin in all studied cases was dynamic equilibrium between different folding states.

Persistent organic pollutants are a well-known threat to the environment. Substances such as polycyclic aromatic hydrocarbons and chlorinated organic compounds in contaminated soil and groundwater can have severe and long-lasting effects on health in animals and humans. There is an urgent need for the development of safe technologies for their effective removal. Originally developed for mineral processing, mechanical treatment by ball milling is an extremely versatile technique for the degradation of toxic compounds. Reactive milling can rapidly destroy organic compounds without producing hazardous wastes. Complete breakdown of the organic molecules is achieved after relatively short milling times. Successful tests were conducted on polychlorobiphenyls (PCBs), DDT, DDD, DDE, Dieldrin and hexachlorobenzene with a conversion yield in the of greater than 99% (Hall et al., 1996; Monagheddu et al., 2000; Zhang et al., 2001; Zhang et al., 2002; Tanaka and Zhang, 2003; Pizzigallo et al., 2004; Nomura et al., 2005; Bellingham, 2006).In this study reactive ball milling was used to investigate the destruction of two classes of persistent organic pollutants environmental contaminants. The compounds studied are either known environmental pollutants or simple analogues. These were chosen as being representative of pollutants to investigate the pathway using ball milling destruction and in most cases were relatively small molecules so that the intermediates could be more easily identified. The first class of compounds was polycyclic aromatic compounds. Some smaller members of this class such as naphthalene, anthracene were investigated. The second class of compounds were some analogues of environmentally hazardous hydroxylated and halogenated compounds such as chloronaphthalene, bromonaphthalene, 1- naphthol, 2-naphthol and pentachlorophenol under reactive milling using GCMS analysis of the degradation pathway. Destruction efficiencies greater than 99% have been achieved for a number of organic compounds. Several different intermediates have been identified during the milling degradation. There was also some evidence from this study that halogens could be transferred between compounds during milling. The final products of the milling destruction of these compounds are an amorphous carbon residue and inorganic chloride or bromides. It was proposed that large amounts of halogens could be found however the results showed that small amounts detected. At early stages of milling a number of intermediate breakdown products were detected which were destroyed on extended milling. The core objective of this research was to clarify the reaction mechanisms pathways used of more complex polycyclic aromatic hydrocarbons and aromatic organ halogen compounds. This study is a part of a long-term research project on the destruction of toxic organic compounds by reactive milling.

<p>The Faroe Islands in the North Atlantic are part of the sub-Arctic region, a remote region far from industrial activity. In spite of this remoteness, the Islands are not a sanctuary: exposures and effects of environmental pollutants mar its natural beauty and wildlife. In the Arctic regions, fish, sea mammals and seabirds have shown to contain elevated levels of the classical persistent organic pollutants (POPs) such as polychlorinated biphenyls (PCBs), as well as more recent POPs such as the polybrominated diphenyl ethers (PBDEs). Human populations living in the Arctic regions are usually highly dependent on seafood and seabirds as food sources, and diet becomes their major source of exposures to POPs. As reported in the 1980’s, residents of the Faroe Islands were shown to have high concentrations of organohalogen substances (OHS) in their breast milk. Long-finned pilot whales (<i>Globicephala melas</i>) blubber and meat have been shown to be a major source of OHS exposure for some of the Faroe Islanders.</p><p>The main objective of this thesis is to investigate the sources and concentrations of some POPs and their metabolites for the Faroese population. First, human milk and serum from pregnant women (mothers) and children were analyzed for PBDEs, PCBs, and polychlorinated biphenylols (OH-PCB), the major PCB metabolites. Second, POPs were measured in seabirds, i.e. PCBs in fulmars (<i>Fulmarus glacialis</i>) and guillemots (<i>Uria algae</i>), and PBDEs in fulmars to search for other potential sources of POPs exposure.</p><p>The results reinforce previous findings that part of the Faroe Island population is highly exposed to OHS. Median concentrations (430 ng/g lipid weight (l.w.) of CB-153) in maternal serum (1994-95) are among the highest in the world. Serum concentrations of CB-153 in children (age 7, samples collected in the early 2000’s) were approximately 90% of those in the mothers, sampled 1994-95. Similarly high CB-153 concentrations (380 ng/g l.w.) were measured in samples of mother’s milk, collected in 1999. The OH-PCB concentrations were also high in segments of the population, with 2.9 ng/g fresh weight as the sum of five OH-PCBs. Except for 4-OH-CB107, concentrations of OH-PCBs were generally lower in children than in mothers.</p><p>The ΣPBDE median concentrations in maternal serum and human milk (1999) are at the higher end of those reported in Europe, with levels of 9.5 and 8.2 ng/g l.w. respectively. ΣPBDE levels increase in human milk samples collected at three different time points (1987-1999), mainly due to increasing BDE-153 concentrations. The range of serum ΣPBDE concentrations in mothers and children are similar, although the congener patterns show differences. BDE-47 is the dominant congener in maternal serum, while BDE-153 is the major congener in children. The differences seen in PBDE congener patterns may arise differences in dates of sampling (7 years) for the two populations, maternal serum sampled in 1994-95 and children serum sampled in 2000-01, rather than from differences in uptake/metabolism or in contemporary exposures.</p><p>PCB concentrations in fulmars and pilot whales show similar ranges. In contrast, PBDE concentrations are 100 times higher in pilot whales than in fulmars. Consequently, Faroese may be especially exposed to PCBs via consumption of fulmars and fulmar eggs, while the exposure to PBDEs is less pronounced.</p><p>Results from this thesis highlight the pronounced exposures to PCBs, OH-PCBs, and PBDEs among residents of the Faroe Islands, a remote region in the Northern Atlantic far away from industrial and urban sources of pollution.</p>

<p>The aim of this thesis was to verify the indicated occurrence of acrylamide formation in heating of food, to identify factors affecting the formation, and to identify important sources of acrylamide exposure from food. As a prerequisite for the studies, gas- and liquid-chromatographic methods with mass spectrometric detection were developed for the analysis of acrylamide in food. The developed methods showed a high correlation coefficient (0.99), high sensitivity and reproducibility. Acrylamide was demonstrated to occur in heated food products, with unexpectedly high levels in potato products (up to mg/kg level in potato crisps) and in beetroot. The identity of acrylamide was confirmed by the developed methods. </p><p>With potato as a food model, different factors affecting the acrylamide formation were tested. It was shown that the addition of asparagine and fructose, as well as heating temperature and time had a large impact on the formation. Other factors affecting the acrylamide content were pH, addition of other amino acids apart from asparagine, protein and other reducing sugars. No significant effects were observed from addition of neither antioxidant nor radical initiators. It was discovered that acrylamide could be formed during heating of biological materials similar to food, also at temperatures below 100 ˚C. Furthermore, it was demonstrated that a fraction of acrylamide evaporates during heating, similar to conditions for cooking in household kitchens, and during dry matter determinations in laboratories (65-130 ˚C). This constitutes an earlier unobserved source of exposure to acrylamide.</p><p>The method for extraction of food was studied with regard to yield of acrylamide. It was shown that the yield at pH ≥12 increases 3 - 4 times compared to normal water extraction for some foods products. Extraction at acidic pH or with enzymatic treatment was also tested, showing no effect on yield.</p><p>In a study with mice the bioaviability of acrylamide extracted with the normal water extration and at alkaline pH was compared. It was shown that the extra acrylamide released at alkaline pH gave insignificant contributions to the in vivo dose, measured by hemoglobin adducts.</p>

<p>PCBs are well known environmental pollutants. They are also precursors to metabolites, as the hydroxy-PCBs and the methylsulfonyl-PCBs. This thesis presents a validated methodology for analysis of PCB metabolites and a structural identification of 38 hydroxy-PCBs in human blood. Further methodological development resulted in an identification of a similar number of methylsulfonyl-PCBs.</p><p>The analytical method has been applied in two extensive studies of humans, consisting of maternal and cord blood from Dutch women and of blood from humans living in Slovakia. The Dutch shows that the relative transfer of hydroxy-PCBs from the mother to the foetus is higher compared to the PCBs. Even though the chemical plant in Michalovce in Slovakia had been shut down for over 20 years, the concentrations of PCB and its metabolites were among the highest detected in European human blood.</p>

<p>Volatile organochlorine compounds emitted from natural sources can participate in environmentally relevant processes affecting life on Earth, such as stratospheric ozone destruction and warming of the troposphere. The aim of this study was to investigate if forest bogs contribute to the environmental input of naturally produced volatile organochlorine compounds. The concentrations of four different volatile organochlorine compounds were determined in ambient air, rainwater, surface water, and sub-surface water. For chloroform, up to 10-times higher concentrations were detected in the surface water compared to the sub-surface water taken at 40 cm depth. As the concentrations of chloroform in rainwater where almost in the same range as the concentrations in the sub-surface water, a formation of chloroform is suggested in the surface water. The results of this study indicate forest bogs as a possible new natural source for the input of volatile organochlorine into the environment.</p>

<p>The most widely used gasoline additive methyl tert-butyl ether (MTBE) has been questioned recently, since frequent detection of this compound in groundwater indicates that it could be a risk to our environment. Consequently, legislative efforts have been made by some local governments to phase out the use of MTBE. Among a number of alternative substitutes, ethyl tert-butyl (ETBE) seems to be the more promised one due to its lower water solubility, suggesting that it could pose less impact to our water supply. However, a thorough understanding of its environmental fate is needed before ETBE is widely accepted as a more environmentally friendly gasoline additive. As a part of this effort, the degradation of MTBE and ETBE as well as their effects on the fate of aromatic gasoline components, i.e. BTEX (benzene, toluene, ethyl-benzene and xylenes) were studied on two soils contaminated with MTBE-blended or ETBE-blended gasoline. During a period of 5 months, the general aerobic degradation of the gasoline and its different additives were monitored by gas chromatography – thermal conductivity detection (GC-TCD) and concentration changes of MTBE and ETBE were monitored with the help of gas chromatography - mass spectrometry (GC-MS). The results of this study showed that the degradation of MTBE, ETBE and BTEX occurred in all the systems, nevertheless MTBE and ETBE degraded far more slowly in contrast with the degradation of BTEX, indicating that MTBE and ETBE are more persistent. When the degradation of MTBE and ETBE were compared, ETBE decreased a little faster than MTBE, implying that ETBE advantages slightly in degradation over MTBE. Concerning the effects of MTBE and ETBE on the fate of BTEX, the results showed that MTBE might enhance whereas ETBE might inhibit the degradation of BTEX though at a lower level. In addition, less degradation of MTBE and ETBE was observed in organic-rich soil in all the cases, probably because that there are more other substrates available for the microorganisms in organic-rich soil.</p>

<p>Wetlands water quality is influenced by the anthopogenic activities in the catchments’ areas. Wastewaters from the urban storm, agricultural runoff and sewage treatment often end up in wetlands before flowing to rivers, lakes and the sea. A lot of pollutants are readily transported in these wastewaters, thus subjecting the wetland ecosystem into a continuous resilience. Importantly, heavy metals like Cu, Zn, and Pb etc. are constituents of such pollutants in the wastewaters.</p><p>The study has as a specific objective to investigate the effects of heavy metal Cu, Zn and Pb on denitrification, an important ecosystem process and service. In a wetland situation, denitrification is a permanent nitrogen removal process accounting for about 90% of the total nitrogen removal.</p><p>The research was carried out in the laboratory and sediment samples were taken from a constructed wetland in Linkoping. We employed acetylene inhibition technique in obtaining N2O as a product resulting from nitrate reduction. The treatments (Cu, Zn and Pb) levels were 100 mg/kg, 250 mg/kg, 500 mg/kg and 1000 mg/kg of sediment, in three replicates and a control.</p><p>Samplings of the assay were taken within 24hours. Gas chromatography was used to analyse and quantify N2O in the various samples. A linear regression analysis was carried out with Windows Excel and SPSS to compare the various treatments with the control at 95% confidence level.</p><p>The results show that there were no inhibitions of denitrification at 100 mg/kg sediment treatment level for any of the element. Inhibition of denitrification was observed at treatment levels 500 mg/kg and 1000 mg/kg of sediment. The rate of nitrate reduction was compared from the slope of the regression curve. The rate for Cu at 500 mg and 1000 mg /kg of sediment was moderately related to that of the control, Zn shows a similar trend but a higher rate in some samples, while Pb shows more inhibition.</p>

<p>Microbes have been suggested to have a strong impact on the transportation of chlorine in soils. There are speculations about environmental factors limiting microbial effect on chlorine movement and retention. For this study, a numerical hydrochemical model was built to describe microbial transformation of chlorine in a laboratory lysimeter experiment. Undisturbed soil cores used to set-up the experiment were collected from a coniferous forest soil in southeast Sweden. The lysimeters were modelled in groups depending on their different water and chloride treatments. Microbial transformation of chlorine was better described under high water residence times and high chloride loads compared to low water residence times and low chloride loads. Microbial activity was also shown to properly account for a sudden shift from net-chlorine retention to net chlorine release in most of the lysimeters. Oxygen proved to be very important in accounting for the short-term shift from chloride retention to release in all the lysimeters. Model outcome revealed that 0.02– 0.10 mg Cl- could be available per day in a coniferous soil depending on season and other soil conditions. This study shows that modeling enable a better understanding of chlorine biogeochemistry. It also confirms the speculated importance of microbial activities on chloride availability in soils.</p>

The Faroe Islands in the North Atlantic are part of the sub-Arctic region, a remote region far from industrial activity. In spite of this remoteness, the Islands are not a sanctuary: exposures and effects of environmental pollutants mar its natural beauty and wildlife. In the Arctic regions, fish, sea mammals and seabirds have shown to contain elevated levels of the classical persistent organic pollutants (POPs) such as polychlorinated biphenyls (PCBs), as well as more recent POPs such as the polybrominated diphenyl ethers (PBDEs). Human populations living in the Arctic regions are usually highly dependent on seafood and seabirds as food sources, and diet becomes their major source of exposures to POPs. As reported in the 1980’s, residents of the Faroe Islands were shown to have high concentrations of organohalogen substances (OHS) in their breast milk. Long-finned pilot whales (Globicephala melas) blubber and meat have been shown to be a major source of OHS exposure for some of the Faroe Islanders. The main objective of this thesis is to investigate the sources and concentrations of some POPs and their metabolites for the Faroese population. First, human milk and serum from pregnant women (mothers) and children were analyzed for PBDEs, PCBs, and polychlorinated biphenylols (OH-PCB), the major PCB metabolites. Second, POPs were measured in seabirds, i.e. PCBs in fulmars (Fulmarus glacialis) and guillemots (Uria algae), and PBDEs in fulmars to search for other potential sources of POPs exposure. The results reinforce previous findings that part of the Faroe Island population is highly exposed to OHS. Median concentrations (430 ng/g lipid weight (l.w.) of CB-153) in maternal serum (1994-95) are among the highest in the world. Serum concentrations of CB-153 in children (age 7, samples collected in the early 2000’s) were approximately 90% of those in the mothers, sampled 1994-95. Similarly high CB-153 concentrations (380 ng/g l.w.) were measured in samples of mother’s milk, collected in 1999. The OH-PCB concentrations were also high in segments of the population, with 2.9 ng/g fresh weight as the sum of five OH-PCBs. Except for 4-OH-CB107, concentrations of OH-PCBs were generally lower in children than in mothers. The ΣPBDE median concentrations in maternal serum and human milk (1999) are at the higher end of those reported in Europe, with levels of 9.5 and 8.2 ng/g l.w. respectively. ΣPBDE levels increase in human milk samples collected at three different time points (1987-1999), mainly due to increasing BDE-153 concentrations. The range of serum ΣPBDE concentrations in mothers and children are similar, although the congener patterns show differences. BDE-47 is the dominant congener in maternal serum, while BDE-153 is the major congener in children. The differences seen in PBDE congener patterns may arise differences in dates of sampling (7 years) for the two populations, maternal serum sampled in 1994-95 and children serum sampled in 2000-01, rather than from differences in uptake/metabolism or in contemporary exposures. PCB concentrations in fulmars and pilot whales show similar ranges. In contrast, PBDE concentrations are 100 times higher in pilot whales than in fulmars. Consequently, Faroese may be especially exposed to PCBs via consumption of fulmars and fulmar eggs, while the exposure to PBDEs is less pronounced. Results from this thesis highlight the pronounced exposures to PCBs, OH-PCBs, and PBDEs among residents of the Faroe Islands, a remote region in the Northern Atlantic far away from industrial and urban sources of pollution.