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The zooplankton community of the main channel of the Mngazana estuary was investigated on six occasions over one year. Spatial and temporal variability in zooplankton abundance and distribution were sampled using two slightly modified WP2 plankton nets of 200 μm mesh and 57 cm mouth diameter. Nets were fitted with calibrated Kahlsico 005 WA 130 flow meters. A set of environmental variables were also measured at each site. The water column of the main channel of Mngazana estuary was stratified in summer but well mixed in winter. Temperature progressively increased from the lower stations to the upper reaches of the estuary. Maximum vertical temperature differences occurred in the middle estuarine reaches. Salinity progressively decreased from the lower reaches to the upper reaches, but was generally above 26 from Station 3 to Station 8. Only during November 2005, were salinity readings low due to heavy rains. Summer salinity values were always lower than the winter salinity values as a result of summer rainfall. A total of 76 zooplankton taxa were identified. The estuarine copepods Acartia natalensis and Pseudodiaptomus hessei dominated the assemblage, with maximum abundances in the middle to upper reaches. Acartia natalensis reached high densities in winter (> 50 000 m-3) although lowest abundances were recorded when maximum rainfall was received (November 2005). Wooldridge (1977) and Deyzel (2004) recorded maximum densities during summer. Pseudodiaptomus hessei reached high densities (> 17 000 m-3) during the highest rainfall month. Previous studies indicated that this pioneer species is able to recover quickly after a flood and subsequently increase rapidly in numbers. The mysid, Mesopodopsis africana reached high densities (> 5 000 m-3) in the middle estuarine reaches during summer. Ichtyofauna, brachyura and anomura were important contributors to the merozooplankton component of the community. The maximum number of species was recorded during winter in the lower estuarine reaches, when vertical differences in salinities were minimal.

Increasing turbidities due to land use changes and poor catchment management can cause negative impacts on estuaries worldwide. High turbidity has an impact on the biological functioning of estuaries which are amongst our most productive ecosystems. This study focuses on the St Lucia estuary on the east coast of South Africa, a UNESCO World Heritage Site and Ramsar wetland of international importance. Increased turbidity due to suspended inorganic sediments has been identified as an important threat to the sustainability of biodiversity in the St Lucia system. In order to determine the influence of increased cohesive sediment loads on the estuarine system it is necessary to understand how flocculation affects the fate and transport of cohesive sediment. Flocculation describes the processes of aggregate formation and breakup. Suspended sediment concentration, salinity and turbulent shear rates have been identified as key drivers of estuarine flocculation. This study investigates flocculation by measuring how the floc size distribution and settling velocities of flocs vary with the key drivers. A laboratory technique was developed where flocculation was simulated in an agitated beaker. Digital imaging techniques were used to measure changes in the size of flocs within the beaker and floc settling velocities in a still settling column. Results show reduced aggregation and floc size with increases in turbulent shear. Floc settling velocities were observed to increase with floc size while the effective density was observed to decrease. The study is concluded by investigating potential applications for the results obtained. / Thesis (M.Sc.Eng.)-University of KwaZulu-Natal, Durban, 2011.

The South Slough Estuary is located off Coos Bay along the southern coast of Oregon. It is divided into two channels that meet and continue to Coos Bay at the Charleston Harbor. There are six major contributing streams to South Slough. After rainfall events, the level of coliform bacteria in the slough increases because of stream bacteria loading. This is due to cattle grazing in the drainage areas, failed septic systems from private homes, and sewage sludge applied to the County landfill, which drains into the slough. The Oregon Health Division has enforced a Sanitation Management Plan for Commercial Shellfish Harvesting in South Slough that specifies closure of commercial shellfish harvesting for certain rainfall and flood events. The purpose of this study is to analyze and improve the current understanding of the hydraulics and water quality of the South Slough Estuary. This was achieved by calibrating the South Slough using the water quality model CEQUAL- W2. It was calibrated for the following parameters water surface elevations, velocity, temperature and total dissolved solids. A management analysis was also done analyzing the transport of bacteria and a conservative tracer. Model predictions for water surface elevations at one of the monitoring sites, Hinch Road Bridge, was significantly lower than measured elevations. There was an excellent correlation of velocity, and reasonable timing of peaks due to tidal effects. Model predictions for temperature and total dissolved solids match measured values well. To improve the accuracy of the model the following was recommended; install a raingage in the South Slough, measure temperature and constituent concentrations at inflow locations, survey the S4 current meter, new soundings performed of the Winchester Creek arm and at the Hinch Road Bridge gaging station, and investigate the possibility of an obstruction near the Hinch Road Bridge gaging station.

The Inanda Dam, situated some 32 to 35km upstream of the Mgeni River estuary on the Indian Ocean 5 km north of Durban, was constructed between 1984 and 1989. This impoundment deprived the downstream section of a great volume of water and sediment supply, initiating significant downstream changes. This situation is compounded by sand winning which directly extracts about 210,000 tonnes of sediment from the Lower Mgeni further depriving the estuary of sediment. A 1997 study predicted that assuming a continuous competent discharge and low contribution of sediments from the tributaries, the channel would gradually scour. Other predictions included a reduction in the total sediments reaching the estuary, continued flushing of existing channel sediments downstream towards the estuary, site-specific channel bed erosion at times of peak water release, gradual build up of sediments near the estuary mouth, gradual fining of bed-load channel and estuarine sediments, and ongoing re-establishment of the central island. The main aim of this study was thus to investigate downstream changes in the Mgeni river estuary below the Inanda dam with regards to sediments, water discharge and channel morphology from 1997 to test these assertions. Results show a decrease in competent discharge below the Inanda dam since 1997, resulting in a corresponding decrease in sand and an increase in mud fractions, with the mud content being associated predominantly with heavy minerals. This is reflected in the poorly sorted sediment. The plotting of cross-sectional survey revealed site-specific erosion, as well as estuarine bank failure to be an on-going process, and indicate points of bed scouring and accretion. A number of reasons have been identified as geomorphological explanations for the changes since 1997. These include among others, a lower hydraulic gradient at the estuary, occasional minor flood events, a weak bank material composition along some portions of the estuarine bank, the Tnanda dam , which impounds coarse sediments and large volume of water and increased tidal activity at the Mgeni estuary. It is concluded that although some of the probable responses predicted in 1997 have happened, sufficient relaxation time may not yet have elapsed for others to become evident. / Thesis (M.Sc.)-University of Natal, Durban, 2002.

Estuaries are among the most productive and diverse of aquatic habitats supporting a rich variety of plants and animals. They are nursery areas for many species of fish harvested by recreational and subsistence anglers. The Swartkops River Estuary (SRE) is situated approximately 10 km north-east of Port Elizabeth and the only major well-preserved estuary within a city, thus unique to South Africa. The SRE is surrounded by highly urbanized and industrialized regions in the Eastern Cape. The aim of this study was to determine and interpret the presence, levels, and distribution of selected priority pollutants in the food web of the SRE. Different components within the SRE were analysed for the presence of environmental contaminants. Seven sites were selected, some coinciding with previous studies in the SRE. Three of these sites are major discharge points that discharge directly into the estuary. Sediment, mud prawn, sand gobies, bird eggs, and various fish species were analysed. Samples were collected in the middle and lower reaches of the estuary, the areas known to receive major pollution loads from neighbouring sources. Heavy metals found in the sediments were compared to previous studies. Bottom sediments and organisms surrounding major discharge points showed higher concentrations of pollutants and compared to previous studies, these concentrations seem to be increasing. Due to biomagnification, higher concentrations were generally found in the top predators although certain elements did not show this trend. Some heavy metal concentrations found in the fish exceeded of the food guidelines and may in turn pose a threat for subsistence users of the SRE. There are indications of multiple different pollution sources. Bird eggs had detectable quantities of polychlorinated biphenyls, but its implications need more investigation. / MSc (Zoology), North-West University, Potchefstroom Campus, 2014

Estuaries are among the most productive and diverse of aquatic habitats supporting a rich variety of plants and animals. They are nursery areas for many species of fish harvested by recreational and subsistence anglers. The Swartkops River Estuary (SRE) is situated approximately 10 km north-east of Port Elizabeth and the only major well-preserved estuary within a city, thus unique to South Africa. The SRE is surrounded by highly urbanized and industrialized regions in the Eastern Cape. The aim of this study was to determine and interpret the presence, levels, and distribution of selected priority pollutants in the food web of the SRE. Different components within the SRE were analysed for the presence of environmental contaminants. Seven sites were selected, some coinciding with previous studies in the SRE. Three of these sites are major discharge points that discharge directly into the estuary. Sediment, mud prawn, sand gobies, bird eggs, and various fish species were analysed. Samples were collected in the middle and lower reaches of the estuary, the areas known to receive major pollution loads from neighbouring sources. Heavy metals found in the sediments were compared to previous studies. Bottom sediments and organisms surrounding major discharge points showed higher concentrations of pollutants and compared to previous studies, these concentrations seem to be increasing. Due to biomagnification, higher concentrations were generally found in the top predators although certain elements did not show this trend. Some heavy metal concentrations found in the fish exceeded of the food guidelines and may in turn pose a threat for subsistence users of the SRE. There are indications of multiple different pollution sources. Bird eggs had detectable quantities of polychlorinated biphenyls, but its implications need more investigation. / MSc (Zoology), North-West University, Potchefstroom Campus, 2014

Thesis (MSc)--Stellenbosch University, 2015. / ENGLISH ABSTRACT: Global warming will result in a sea level rise of between 0.25 and 0.82 m by 2090, as well as an increase in intensity and frequency of both extreme sea level and extreme rainfall events. In consequence, low-lying areas will be permanently inundated, extreme waves will penetrate further inland and flood intensity and frequency will increase. Estuaries are subject to the effect of both extreme sea levels and extreme floods and water levels in estuaries are expected to increase, under both open and closed conditions. As a response to expected higher flood levels, setback lines have been legislated in South Africa. For cases where a flood level study has not been undertaken, a minimum setback line at the 5 m above mean sea level (MSL) contour is prescribed in terms of the National Environmental Management Act (Act 107 of 1998). This study assessed the adequacy of the 5 m setback line, under the effects of climate change, for Great Brak estuary. Local features of the Great Brak estuary may influence flood levels. Specifically, the lagoon of the Great Brak estuary, below the N2 Bridge, is small at 1.1 x 0.7 km. Further, it is constrained at the upstream end by road and rail embankment, and on the left bank by steep slopes. A sand barrier at the mouth is at times breached, both naturally and artificially. Artificial breaching is initiated when the sand barrier is between 1.5 and 2.0 m high, or when a flood is forecast. The barrier has previously reached 2.7 m, higher than the still water level of the sea, which has not exceeded 2 m above MSL. There is a populated island about 180 m upstream of the mouth. The greater extent of the island is below 2.5 m above MSL. Mike11 software was used to generate flood levels on which the conclusions of this study are based. The study determined that the influence of the increased sea levels does not extend much beyond the N2 Bridge. This may be a peculiarity of the Great Brak estuary, due to the influence of the three bridges and the road and rail embankments. For the scenario where Mean High Water Springs coincides a with an extreme sea storm and there is a 100-year riverine flood, the flood level in the estuary is 3.16 m at the mouth, increasing to 4 m upstream of the N2 bridge. In the scenario where the barrier height was raised to 4 m above MSL, the flood levels were 4.52 m downstream of, and 5 m upstream of, the N2 Bridge. Extensive inundation of properties in the floodplain and on the Island will occur, as well as the inundation of the N2 embankment. The probability of such an extreme sea level event occurring at the same time as peak runoff of a 100-year riverine flood is unlikely. It is the conclusion of this study that, for the Great Brak River, the 5 m setback line, as prescribed, is sufficient for an extreme situation where a future 100-year flood coincides with the MHWS coincides and an extreme sea storm raising the sea level to 2.65 above current MSL. / AFRIKAANSE OPSOMMING: Aardverwarming sal lei tot 'n styging van seevlakke van tussen 0.25 en 0.82 m teen 2090, sowel as 'n toename in intensiteit en frekwensie van beide stormseevlak en reënval. Gevolglik sal laagliggende gebiede permanent oorval word, stormgolwe verder in die binneland dring en vloed intensiteit en frekwensie toeneem. Riviermondings is onderhewig aan die effek van beide hoë seevlakke en vloede. Om die negtaiewe effekte van hoër vloedvalktes te bekamp word ‘n minimum terugsetlyn van 5 m bo seevlak voorgeskryf, in terme van die Wet op Nationale Omgewingsbestuur (Wet 107 van 1998). Hierdie is van toepassing waar ‘n vloedlyn studie nie onderneem is nie. Hierdie studie beoordeel die geskiktheid van die 5 m terugsetlyn, onder die invloed van klimaatsverandering, vir Groot Brak rivier monding. Plaaslike kenmerke van die Groot Brak monding mag vloed vlakke beïnvloed. Spesifiek, die Groot Brak monding meer het ‘n oppervak van net 1,1 x 0,7 km; is in die stroomop rigting beperk deur pad en spoor walle; en word op linkeroewer deur steil hellings vesper. Die sandversperring by die word kunsmatig oopgemmak wanneer die sand versperring tussen 1,5 en 2,0 m hoog is, of wanneer 'n vloed voorspel word. Hierdie sandversperring het al voorheen 2.7 m hoogte beriek, hoër as die 2 m maksimum historiese stilwater vlak van die seë. Daar is 'n bevolkde eiland sowat 180 m stroomop van die mond. Die die eiland is meestelik onder 2.5 m bo seevlak. Mike11 sagteware is gebruik om vloed vlakke, waarop die bevindinge van hierdie studie gebaseer is, te bepaal. Hiedie studie bevind dat die effek hoër voedvlakke trek nie veel verder stroomop as die N2 brug, oontlike weens die voorkoms van die drie bruë. In die geval waar ‘n uiterste seëstorm terselfde tyd voorkon as die lente hoogwater gety endie 100 jaar river vloed, sal die watervlak in the mondingsmeer tot 3.16 m bo huidiglike seëvlak styg by die mond, en tot 4 m bo huidiglike seëvlak by die N2 brug. In die geval waar die sandversperring by the riviersmond 4 m verhoog is, sal die watervlak in the mondingsmeer tot 4.5 m bo huidiglike seëvlak styg by die mond, en tot 5 m bo huidiglike seëvlak by die N2 brug. Faktore nie in ag geneem in hierdie studie sluit in die uitwerking van die verhoogde afloop, sediment verandering en die effek van windgolwe oor die ondingsmeer. Wydverspreide vloeding van ontwikkelde areas aangrensend to vloedvlakte sal voorkom, insluitend die oorstroing van die N2 padwal. Die waarskynlikheid is klein dat ‘n uiterste seëstorm terselfde tyd voorkom as the lengte hoogwater gety en die 100 yaar rivier vloed. Dit is dus die gevolgtrekking van hierdie studie dat die 5 m terugsetlyn soos voorgeskryf, voldoende is vir Groot Brak rivier vir so ‘n uiterste geval.