A regulação da expressão gênica é essencial para os fungos se adaptarem às adversidades ambientais, como alterações no pH extracelular, escassez de nutrientes, força iônica e oscilações de temperatura. A resposta adaptativa ao pH ambiente é bem caracterizada em fungos modelo como Aspergillus nidulans, e envolve a via de transdução de sinal constituída pelos produtos dos genes pal e pacC. No dermatófito Trichophyton rubrum, o gene pacC foi inativado, e a linhagem mutante apresentou uma diminuição na atividade das queratinases, indicando que, de alguma forma, este gene está envolvido na regulação da atividade queratinolítica deste dermatófito, e consequentemente na sua virulência e patogenicidade. Além disto, a glicosilação protéica é uma importante forma de regulação pós traducional, estruturando e estabilizando glicoproteínas que podem ser da via secretória, da parede ou da membrana celular. O processo de glicosilação protéica sofre influência do pH extracelular e da fonte nutricional. Foi ainda relatado que este tipo de regulação pós traducional também sofre influência dos genes palB e pacC, indicando que estes genes tenham um papel na glicosilação de enzimas secretadas. O objetivo deste trabalho foi analisar a influência do pH e da fonte nutricional na expressão de genes que codificam enzimas de N- e O-manosilação, e sua possível modulação pela proteína PacC no dermatófito T. rubrum. Para tanto, foi analisado, por PCR em tempo real, o perfil transcricional destes genes nas linhagens H6 (controle) e pacC-1, utilizando-se como fonte de carbono glicose, glicose e glicina ou queratina em vários tempos de cultivo, em pH 5,0 ou 8,0. A análise da expressão gênica revelou que quando a linhagem controle é cultivada em queratina em pH 5,0 ocorre um aumento da expressão da O-manosiltransferase, comparado com o cultivo em glicina com glicose e glicose. Porém, nestas mesmas condições o gene da N-manosiltransferase da linhagem mutante apresenta maiores níveis de expressão que os da linhagem controle. Em pH 8,0 pode-se notar grande semelhança entre os perfis de expressão apresentados por estes dois genes. Os resultados obtidos indicam que o gene pacC tem um papel importante no sensoriamento de nutrientes em meio ácido, modulando a expressão destas transferases, nas condições avaliadas. Estas enzimas podem ativar proteínas que atuam na hidrólise da queratina, ou mesmo formar glicoproteínas de parede celular que são essenciais na adesão do fungo à célula do hospedeiro, sugerindo um papel das manosiltransferases no processo infeccioso. / Gene expression regulation is essential for fungi to adapt to environmental adversities, such as changes in the extracellular pH, nutrient starvation, ionic strength, and temperature. The adaptive response to ambient pH is well characterized in model fungi such as Aspergillus nidulans, and involves the signal transduction pathway consisting of the products of the pal and pacC genes. In the dermatophyte Trichophyton rubrum, the pacC gene was inactivated and the mutant strain showed a decreased activity of keratinases, indicating that, somehow, this gene is involved in the regulation of the keratonolytic activity of this dermatophyte, and consequently in its virulence and pathogenicity. Moreover, protein glycosylation is an important form of post-translational regulation, playing a role in protein folding and stability of glycoproteins of the secretory pathway, cell wall or membrane. The process of protein glycosylation is influenced by extracellular pH and nutritional source. It has also been reported that this type of post-translational regulation is also influenced by the palB and pacC genes, indicating that these genes have a role in glycosylation of secreted enzymes. The objective of this study was to analyze the influence of the pH and nutritional source in the expression of the genes coding for the N-and O-manosylation enzymes, and their possible modulation by PacC in the dermatophyte T. rubrum. To this end, the transcriptional profile of these genes was analyzed, by Real Time PCR, in the H6 (control) and pacC-1 strains, using glucose, glucose with glycine, or keratin as the carbon source, in several culture times, at pH 5.0 or 8.0. Gene expression analysis showed that when the control strain is grown in keratin at pH 5.0 there is an increased expression of the O-manosyltransferase encoding gene, compared to the cultivation in glucose and glucose with glycine. However, at the same conditions the gene coding for the N-manosyltransferase presented higher levels of expression in the mutant strain in relation to the control strain. At pH 8.0 there is a great similarity between the expression profile of these two genes. The obtained results indicate that pacC gene plays an important role in nutrient sensing at acidic pH by modulating the expression of these transferases in the conditions evaluated. These enzymes can activate proteins that play roles in the hydrolysis of keratin, or even forming cell wall glycoproteins that are essential for the adhesion of the fungus to the host cell, suggesting a role of the manosyltransferases in the infectious process.

A regulação da expressão gênica é essencial para os fungos se adaptarem às adversidades ambientais, como alterações no pH extracelular, escassez de nutrientes, força iônica e oscilações de temperatura. A resposta adaptativa ao pH ambiente é bem caracterizada em fungos modelo como Aspergillus nidulans, e envolve a via de transdução de sinal constituída pelos produtos dos genes pal e pacC. No dermatófito Trichophyton rubrum, o gene pacC foi inativado, e a linhagem mutante apresentou uma diminuição na atividade das queratinases, indicando que, de alguma forma, este gene está envolvido na regulação da atividade queratinolítica deste dermatófito, e consequentemente na sua virulência e patogenicidade. Além disto, a glicosilação protéica é uma importante forma de regulação pós traducional, estruturando e estabilizando glicoproteínas que podem ser da via secretória, da parede ou da membrana celular. O processo de glicosilação protéica sofre influência do pH extracelular e da fonte nutricional. Foi ainda relatado que este tipo de regulação pós traducional também sofre influência dos genes palB e pacC, indicando que estes genes tenham um papel na glicosilação de enzimas secretadas. O objetivo deste trabalho foi analisar a influência do pH e da fonte nutricional na expressão de genes que codificam enzimas de N- e O-manosilação, e sua possível modulação pela proteína PacC no dermatófito T. rubrum. Para tanto, foi analisado, por PCR em tempo real, o perfil transcricional destes genes nas linhagens H6 (controle) e pacC-1, utilizando-se como fonte de carbono glicose, glicose e glicina ou queratina em vários tempos de cultivo, em pH 5,0 ou 8,0. A análise da expressão gênica revelou que quando a linhagem controle é cultivada em queratina em pH 5,0 ocorre um aumento da expressão da O-manosiltransferase, comparado com o cultivo em glicina com glicose e glicose. Porém, nestas mesmas condições o gene da N-manosiltransferase da linhagem mutante apresenta maiores níveis de expressão que os da linhagem controle. Em pH 8,0 pode-se notar grande semelhança entre os perfis de expressão apresentados por estes dois genes. Os resultados obtidos indicam que o gene pacC tem um papel importante no sensoriamento de nutrientes em meio ácido, modulando a expressão destas transferases, nas condições avaliadas. Estas enzimas podem ativar proteínas que atuam na hidrólise da queratina, ou mesmo formar glicoproteínas de parede celular que são essenciais na adesão do fungo à célula do hospedeiro, sugerindo um papel das manosiltransferases no processo infeccioso. / Gene expression regulation is essential for fungi to adapt to environmental adversities, such as changes in the extracellular pH, nutrient starvation, ionic strength, and temperature. The adaptive response to ambient pH is well characterized in model fungi such as Aspergillus nidulans, and involves the signal transduction pathway consisting of the products of the pal and pacC genes. In the dermatophyte Trichophyton rubrum, the pacC gene was inactivated and the mutant strain showed a decreased activity of keratinases, indicating that, somehow, this gene is involved in the regulation of the keratonolytic activity of this dermatophyte, and consequently in its virulence and pathogenicity. Moreover, protein glycosylation is an important form of post-translational regulation, playing a role in protein folding and stability of glycoproteins of the secretory pathway, cell wall or membrane. The process of protein glycosylation is influenced by extracellular pH and nutritional source. It has also been reported that this type of post-translational regulation is also influenced by the palB and pacC genes, indicating that these genes have a role in glycosylation of secreted enzymes. The objective of this study was to analyze the influence of the pH and nutritional source in the expression of the genes coding for the N-and O-manosylation enzymes, and their possible modulation by PacC in the dermatophyte T. rubrum. To this end, the transcriptional profile of these genes was analyzed, by Real Time PCR, in the H6 (control) and pacC-1 strains, using glucose, glucose with glycine, or keratin as the carbon source, in several culture times, at pH 5.0 or 8.0. Gene expression analysis showed that when the control strain is grown in keratin at pH 5.0 there is an increased expression of the O-manosyltransferase encoding gene, compared to the cultivation in glucose and glucose with glycine. However, at the same conditions the gene coding for the N-manosyltransferase presented higher levels of expression in the mutant strain in relation to the control strain. At pH 8.0 there is a great similarity between the expression profile of these two genes. The obtained results indicate that pacC gene plays an important role in nutrient sensing at acidic pH by modulating the expression of these transferases in the conditions evaluated. These enzymes can activate proteins that play roles in the hydrolysis of keratin, or even forming cell wall glycoproteins that are essential for the adhesion of the fungus to the host cell, suggesting a role of the manosyltransferases in the infectious process.

Chemical exchange saturation transfer (CEST) MRI has the ability to noninvasively measure endogenous biomarkers and exogenous agents relevant to various diseases and medical conditions. My work has focused on the development of MRI pulse sequences and data analysis methods to more accurately estimate endogenous and exogenous CEST contrast measurements at 7 T and 3 T magnetic field strengths. Chapter 1 discusses the various sources of signal that have been measured with CEST MRI in the clinic, the acquisition methods used to acquire these signals, and the data analysis methods used to quantify the CEST effects from these signals. Appendix A describes the development of a respiration gated CEST pulse sequence that was ultimately used with a lung fibrosis mouse model to measure extracellular pH (pHe) of the fibrotic lesions. Appendix B describes the development of a data processing algorithm that used the Bloch equations modified for chemical exchange to generate more accurate and precise pHe estimates both at 7 T and 3 T magnetic field strengths relative to a previous data processing algorithm. Appendix C describes the development of a retrospective gating technique for the lung that generates more accurate and precise endogenous CEST contrast measurements.

Articular cartilage has a low propensity for self-repair, due to which 27 million people are affected by osteoarthritis every year in North America. The current repair techniques used for cartilage defects possess flaws that reduce long-term clinical success. Tissue engineering carries with it the promise of engineering hyaline-like cartilage with physical and biochemical properties, similar to that of native cartilage. This being said, the primary objective of my project was to engineer clinically relevant sized articular cartilage constructs. To achieve my objective, first, I investigated the effect of continuous culture on cartilaginous tissue growth. Constructs grown under continuous media flow significantly accumulated more collagen and glycosaminoglycan, and displayed a stratified morphology, similar to that found in native cartilage. The second goal was to further increase chondrocyte proliferation, and extracellular matrix (ECM) accumulation. To achieve this, constructs were grown in a bioreactor with media supplemented with 14 mM sodium bicarbonate (NaHCO3). Constructs cultivated in the bioreactor with NaHCO3 supplementation exhibited a significant (p<0.05) increase in ECM accumulation (a 98-fold increase in glycosaminoglycans and a 25-fold increase in collagen content), cell proliferation (a 13-fold increase), and thickness (a 28-fold increase) compared to all other conditions (static and reactor without NaHCO3 supplementation). The third goal was to engineer cartilage constructs with as little cells as possible, reducing donor site morbidity. From the results obtained, it was evident that the monolayer constructs outperformed all the other constructs (pellet, biopsy, and minced). The final goal was to understand the underlying reason for the increased proliferation. First, I investigated if there were any differences present in intracellular pH (pHi) and intracellular buffering capacity. Second, I determined the role of extracellular pH (pHe) on cell proliferation. In an effort to accurately achieve this, I, for the first time, have reported on measuring pHi of chondrocytes while still in culture (2D and 3D cultures) using a confocal microscope. This study demonstrated the importance of extracellular environments, such as pHe, extracellular buffering capacity, and the presence of carbon dioxide and bicarbonate ions for chondrocyte proliferation. / Thesis (Ph.D, Chemical Engineering) -- Queen's University, 2012-10-30 19:19:32.026