Sponges are filter feeders that lack nerves and muscle but are nonetheless able to respond to changes in the ambient environment to control their feeding current. Cellular sponges undergo coordinated contractions that effectively expel debris. Syncytial sponges propagate action potentials through their tissue, causing immediate flagellar arrest. Understanding the basis of this coordination in sponges is of interest for the insight it provides on mechanisms of coordination in early branching animals. However, when I began this thesis no ion channels had been described from the Porifera. I adopted a multifaceted approach to studying the conduction system of sponges. This included cloning and characterizing potassium channels as a means to understanding the underlying ionic currents, and monitoring regulation of the sponge feeding current in response to environmental stimuli. The latter experiments provided a functional context. The glass sponges Rhabdocalyptus dawsoni and Aphrocallistes vastus arrest feeding in response to mechanical disturbance and to sediment in the incurrent water suggesting a protective role. Monitoring patterns of feeding current arrests also revealed several features of the glass sponge conduction system: pacemaker activity, mechanosensitivity, distinct excitability thresholds, and tolerance to repeated stimuli. With access to the genome of the demosponge Amphimedon queenslandica I have also cloned and characterized the first sponge ion channels. Inward rectifier potassium (Kir) channels were prioritized for their role in regulating excitability. Kir channels cloned from A. queenslandica shared critical residues and a strong rectifying phenotype with Kir channels typically expressed in excitable cells. A variety of potassium channels from A. queenslandica indicate great diversity and a foundation for coordination at the dawn of the Metazoa / Physiology, Cell and Developmental Biology

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The gut microbiome is a complex ecosystem of bacteria, viruses, and fungi that strongly influences animal health. The bacterial component, for example, contributes orders of magnitude more gene products to host physiology than the host genome; thus, changes to the composition of these bacterial communities can have profound influences on the health of the animal. By infecting and lysing their hosts, viruses (particularly viruses infecting bacteria or phages) can affect critical functions in these environments, yet the consequences of these infections remain to be fully described. Most studies investigating gut viromes to date have focused on double-stranded DNA (dsDNA) phages and, consequently, little is known about the smaller single-stranded DNA (ssDNA) phages, which also inhabit gut environments. In this study, we investigated ssDNA phages of the Microviridae family within the gut of an invertebrate organism, Ciona robusta, used as a model system to better understand gut microbial interactions. As a filter feeder, Ciona concentrates dissolved organics and microbes as part of its diet, yet maintains a microbiome distinct from the surrounding water column. We identified 258 unique ssDNA phage genomes representing a diversity of Microviridae subgroups including novel members of the established Gokushovirinae subfamily and several proposed phylogenetic groups (Alpavirinae, Aravirinae, Group D, Parabacteroides prophages, and Pequeñovirus). Over 70% of the genomes belonged to the Gokushovirinae; however, 155 of these genomes did not group with previously described sequences. Our results highlight an unprecedented diversity of ssDNA phages from an animal gut. Furthermore, comparative analysis between samples collected from Ciona specimens with full and cleared guts as well as the surrounding water indicated that Ciona retains a unique and highly diverse community of ssDNA phages. The present study significantly expands the known diversity within the Microviridae family and suggests that Ciona is a promising system for studying the role of ssDNA phages within animal guts.