Thesis (Ph. D.)--Rhodes University, 2006. / Title from PDF t.p. (viewed on Apr. 12, 2007). Includes bibliographical references (p. 184-207).

Thesis (Ph. D. (Ichthyology and Fisheries Science))--Rhodes University, 2006.

Thesis (Ph.D. (Ichthyology and Fisheries Science))--Rhodes University, 2006.

This thesis develops the first open population model for any shark species worldwide using the Cormack-Jolly-Seber (CJS) model. In conjunction with a tagging study, five auxiliary studies were conducted to investigate stock structure, post-release mortality, tag shedding, and tag-reporting rates. The results from each of the studies were used to correct for any violations of the models assumptions to provide the first unbiased estimates of survival and abundance for the raggedtooth shark (Carcharias taurus) in South Africa. The C. taurus population exhibited complex stock structuring, by size and sex. Competitive shore anglers fished an estimated 37, 820 fishing days.year⁻¹ (95% C.I. = 28, 281 - 47, 359 days.year⁻¹) for sharks, and caught 1764 (95% C.I. = 321 – 3207) C. taurus. Although released alive, post-release mortality ranged from 3.85% for young-of-the-year sharks to 18.46% for adult sharks. Between 1984 and 2004, a total of 3471 C. taurus were tagged. In all, 302-tagged sharks (8.7%) were recaptured. Both juvenile (< 1.8 m TL) and adult sharks (> 1.8 m TL) displayed philopatric behaviour for specific parts of their ranges, including gestating and parturition areas. Significant differences were observed in the percentage of recaptures between the different tag types, tagging programs, individual taggers and capture methods used to tag sharks. The annual tag retention rate for juvenile sharks, 94.19% (95% C.I. = 80.68% - 100.00%) was significantly higher than for adult sharks, estimated at 29.00% (95% C.I. = 6.76% - 64.39%). Tag reporting rates, from fishermen varied both spatially and temporally from 0.28 (95% C.I. = 0.00 – 0.63) to 0.77 (95% C.I. = 0.56 – 0.97). Associated tag wound damage and biofouling growth indicated that B-type tags were a suitable tag type for use on C. taurus, whereas C-type tags were not. The CJS bias-adjusted estimate for juvenile survival was 0.456 (95% C.I. = 0.367 – 0.516) and for adult sharks, 0.865 (95% C.I. = 0.795 – 0.915). From 1984 to 2004 the mean bias-adjusted population size for juvenile sharks was estimated at 3506 (95% C.I. = 2433 – 4350) and for adult sharks, 5899 (95% C.I. = 7216 – 11904). Trends in abundance over the 20-year study period indicated a stable, healthy population.

This thesis investigates the movement behaviour of South African two coastal fish species and evaluates the effectiveness of marine protected areas (MPAs) in their protection and management. Its primary focus is on resolving the movement patterns of roman Chrysoblephus laticeps (Sparidae) in and around the Goukamma and Castle Rock MPAs in the Western Cape province of South Africa. A pilot study of the methodology investigated the movement behaviour of spotted grunter Pomadasys commersonnii (Haemulidae) in the sheltered East Kleinmonde Estuary in the Eastern Cape province. The application of different tagging methods was tested in a controlled tank experiment. Tagged roman were monitored over a 198-day period. Barbed dart, t-bar anchor and Visible Implanted Fluorescent Elastomer (VIFE) tags were compared. Application techniques and underwater visibility of VIFE tags were tested on roman and on fransmadam Boobsoidia inornata in a pilot study. Needles of gauge 25 were found to be optimal for VIFE tag application. Whereas VIFE tagging caused fin rot in fransmadam, it had no negative effect on roman. VIFE tagged fish could be identified by divers from a distance of three metres under ambient light in an observation tank in five metres water depth. There was no significant difference in growth rate between groups of roman with different tags and controls after 198 days. High tag loss rates were experienced for barbed dart and t-bar anchor tags, although barbed dart tags performed better than t-bar anchor tags. Although some of the VIFE marks had deteriorated, all VIFE tagged fish were individually recognised at the end of the study. Conventional dart and VIFE tags are feasible methods to tag roman. However, the high tag loss rate of conventional tags must be taken into account in the design of a tagging study. Previous mark and recapture studies on roman are beset with a number of problems. Poor experimental design and low precision of capture positions resulted in equivocal results of limited value. A tagging experiment was designed to eliminate ambiguity in data interpretation and to produce a dataset that could be used to model roman residency and dispersal. A combination of conventional barbed dart tags and Visible Implanted Fluorescent Elastomer tags was used to tag roman in the Goukamma Marine Protected Area (GMPA) on the temperate South African south coast. Sixty one percent of roman were recaptured within 50 m of the tagging position. A small proportion moved considerable distances of up to four kilometres. The extent of these movements was not dependent on fish size or sex. Data from this experiment and from a previous tagging study in the Tsitsikamma National Park (TNP) were used to model the resident behaviour of roman. The model suggests a probability of 91% (GMPA) and 94% (TNP) of residency within a 10000 m² cell. This result suggests that individual roman will benefit from protection in small MPAs. A different experimental approach was required to investigate the exact home range of this species. Firstly the feasibility of using acoustic telemetry to study the movement of coastal fish in South Africa was investigated. The telemetry equipment comprised two VEMCO V8 transmitters and a VEMCO VR60 receiver linked to a directional hydrophone. A tank experiment was conducted to examine the effects of the transmitter implantation. A tracking experiment was conducted on spotted grunter Pomadasys commersonnii in the East Kleinmonde Estuary. Operated fish recovered quickly and, with respect to swimming behaviour and growth rates, no differences were found between fish with implants and controls. The maximum detection range in the estuary was 400 m. Interference between different transmitter frequencies was negligible. Transmitter location recordings were found to be accurate within five metres. Two fish were tracked over a seven-day period. The fish preferred the lower reaches of the estuary where they made repeated and prolonged use of specific areas. The success of the initial experiments allowed this method to be used to investigate the spatial utilisation and activity patterns of roman Chrysoblephus laticeps. Surgically implanted VEMCO V8, V13 and V16 transmitters were used to track 13 roman inside the Castle Rock MPA in False Bay. Transmitters implanted into C. laticeps in tanks had no apparent effects on growth and physiology. Manual boatand diver-based tracking experiments covered a 17-month period. A VEMCO VRAP radio acoustic positioning system was used over two one-month periods during and after the spawning season of roman. Analysis of data using a 95% fixed kernel algorithm suggests that roman are resident throughout their adult life, occupying home ranges between 1000 and 3000 m². Activity was lower at night. During periods of cold-water upwelling, fish retreated into caves. During the spawning season, females extended their home ranges, possibly to mate with different males. These results confirm that this species is well suited for protection and management with small MPAs. The effect of two MPAs on the South African south coast on the population of C. laticeps was simulated with a spatially explicit individual based model (IBM). Life history parameters determined in recent studies and the effect of fishing on the size of sex change was taken into account. Fish densities and size frequencies were based on recent underwater visual census. The distribution of suitable habitat in the study areas was also incorporated. The results show a rapid recovery of the fish size frequency spectrum and sex ratio to pre-exploitation levels inside both MPAs. Little 'spillover' of fish into the fished areas occurred resulting in negligible improvement of catches. The results suggest that for resident species like roman, even small MPAs offer sufficient protection.

The silky shark Carcharhinus falciformis forms the primary elasmobranch bycatch in tuna purse seine fisheries using fish aggregating devices (FADs) in all of the world’s tropical oceans. Its life-history traits of slow growth, late maturation and low fecundity make it vulnerable to over exploitation, as is apparent from historical bycatch trends. Very little is known about the associative behaviour of this species with floating objects, information which is essential in formulating effective mitigation and management measures. This study aims to address this knowledge gap through the use of various electronic tagging techniques in conjunction with dietary analysis. Dietary data were collected from 323 silky sharks incidentally caught at FADs. Approximately 40 percent of the diet consisted of prey associated with FADs while the remaining 60 percent were non-associated species of crustaceans, cephalopods and fishes. These results suggest that the associative behaviour is not primarily driven by trophic enhancement, but is likely a combination of predator avoidance, social interactions and feeding. Fine-scale behavioural data from silky sharks associated with drifting FADs were collected through the use of acoustic telemetry techniques. Acoustic tags were implanted into 38 silky sharks (69- 116 cm TL) at eight FADs. FADs were equipped with satellite linked acoustic receivers and abandoned to drift freely. Presence/absence and swimming depth data were telemetered via the Iridium satellite system. A total of 300 d of behavioural data were collected from 20 tagged individuals. Individuals remain associated with the same FAD for extended periods (min = 2.84 d, max = 30.60 d, mean = 15.69 d). Strong diel patterns were observed in both association and swimming depth. Typically individuals moved away from FADs after sunset and return later during the night, then remain closely associated until the following evening. Vertical behaviour also changed around sunset with sharks using fairly constant depths, within the upper 25 m, during the day and switching to rapid vertical movements during the night, with dives in excess of 250 m recoded. Broader scale movement behaviour was investigated using pop-up archival satellite tags (PSATs). Tags were deployed on 46 silky sharks (86-224.5 cm TL) for a total of 1495 d. Light data were used to calculate geolocation estimates and reconstruct the sharks’ trajectories. Movement patterns differed between animals and according to deployment duration. Several extensive horizontal movements were observed, with an average track length of 3240 km during an average tag deployment of 44.02 d. Horizontal movement patterns were found to correlate very closely with drift patterns of FADs. Consequently, it appears that the movement behaviour of juvenile silky sharks is strongly influenced by the movement of drifting FADs in this region. Ghost fishing of silky sharks through entanglement in FADs was also investigated using data derived from PSATs as well as underwater visual censuses. Thirteen per cent of the tagged sharks became entangled in FADs and entangled sharks were observed in 35 percent of the 51 FADs surveyed. Using this information in conjunction with estimated time that sharks remained entangled in the FAD (from depth data from PSATs), and scaling up according to estimates of FAD numbers, it was found that between 480 000 and 960 000 silky sharks are killed annually in this manner in the Indian Ocean. Subsequent management measures in this region prevent the deployment of FADs with netting that could lead to entanglement. Overall, floating objects appear to play a significant role in the juvenile life stages of silky sharks in this region. While their association with floating objects is clearly advantageous in an evolutionary sense, under current tuna fishery trends, this behaviour is certainly detrimental for the population.