The success of the larval stage in fishes plays a critical role in structuring adult fish populations. It is well understood that juveniles of many marine fish species are closely associated with nearshore and coastal habitats that serve as nursery areas while adult assemblages are more widely distributed. The larval phase however, particularly pertaining to nursery habitat use, remains poorly understood in South Africa. A mixed-method, larval and juvenile fish study was conducted in the warm-temperate shallow coastal waters of Algoa Bay, South Africa. Two years (2010 – 2012) of seasonal sampling at 27 stations at various habitat types revealed distinct spatio-temporal patterns in larval fish composition and abundance. In total, 164 species from 50 families were collected in the nearshore (<30 m), over reef and sand, in the surf zone and large estuarine habitats in Algoa Bay. Engraulidae dominated the larval fish catch in the nearshore (38.4 percent) and over the selected reef and sand habitats (37.8 percent). Cynoglossidae (28.1 percent) and Sparidae (8.4 percent) were the second and third most abundant fish families in the nearshore. In subtidal reef and sand habitats, Gobiidae (23.4 percent) and Clupeidae (9.2 percent) were the second and third most abundant families respectively. Sparidae dominated (71.4 percent) surf zones followed by Soleidae (10.8 percent) and Mugilidae (5.3 percent), while in the mouth area of two permanently open estuaries in Algoa Bay, Gobiidae (35.9 percent) Sparidae (30.1 percent) and Mugilidae (12.4 percent) dominated. Several species from the Blenniidae, Gobiesocidae, Gobiidae, Scorpaenidae and Tripterygiidae fish families complete their pelagic larval phase in the reef habitats in Algoa Bay. These reef habitats therefore serve as important nursery areas for the larvae of benthic species. The sand and nearshore habitats serve as nursery areas for Clupeidae and Engraulidae. Highest densities of Carangidae, Sciaenidae and Sparidae larvae were observed at the subtidal reef habitats indicating that this area is important for accumulation of the early developmental stages of these fishes. The nearshore serves as an important accumulation habitat for species in the Haemulidae and Soleidae families whose juveniles are known to recruit into estuarine nursery areas. The nearshore therefore is a specific area of presettlement buildup of larvae prior to settlement of larvae or juveniles in estuarine nursery areas. Cynoglossidae larvae are also using the nearshore as an accumulation area prior to settlement and recruitment into adult populations occurring in shallow water habitats. In the surf zone, not only are estuary-dependent fish species utilizing this habitat as a nursery area, but marinespecies whose adults are either associated with rocky shores or surf zones are similarly using these areas as nursery habitats. In addition, estuary-dependent fish species which spawn in the marine environment are actively recruiting into estuarine nursery areas on both tides. Active recruitment against the outgoing ebb tide flow was a conclusive finding in this study. These larvae and juveniles are actively swimming against the ebb tide in the shallower, slower-flowing marginal areas where current flow is reduced. Strong environmental gradients on multiple temporal and spatial scales occur in Algoa Bay. Seasonal patterns were evident in larval densities, richness and diversity. Peaks in density, richness and diversity occurred during spring and summer (September to February) associated with increasing water temperatures and a high productivity providing a good food environment for larval fishes. Thereafter densities declined steadily as a result of natural mortality, settlement or adult spawning activity, until autumn when numbers dropped suddenly as the surviving larvae moved to settlement habitats. The relationship between larval fish and environmental variables provides information useful to determine distributions. Therefore the Bay is particularly suited for modelling larval fish distributions. Using generalized linear models, larval fish density in the nearshore of Algoa Bay responded to different ocean features to varying degrees. Larval fish density responded positively to both upwelling and when warm water plumes, originating from an Agulhas Current meander, entered Algoa Bay. On subtidal reefs, habitat complexity played an important role in determining larval fish composition and diversity. The less structurally complex, reefassociated sand habitats, yielded higher species richness and diversity than the high and low profile reef habitats. Therefore, it is likely that the importance of less structurally complex habitats has been overlooked relative to other habitats in terms of their function for larval fishes. In the surf zone, wave period and wave height, which can be related to exposure, were the most significant environmental factors influencing larval fish assemblages. Greatest species diversity was observed in the surf zone habitats heavily influenced by wave action in the windward sector of Algoa Bay. The identification of spawning areas and the mapping of distributions of early developmental stages of fishes are important in providing data pertaining to the protection of these habitats. This is particularly relevant as a new marine protected area MPA)is planned for the eastern sector of Algoa Bay. Results from retrogressive plots indicate that the spawning locations of several species of coastal and pelagic fishes are occurring outside of the Bay, with the bay therefore serving as an accumulation area. Furthermore, distribution modelling results demonstrate that the early developmental stages of fishes in the shallow coastal habitats of Algoa Bay exhibit high spatial variability in their distributions. Results presented in this thesis help fill the knowledge gaps critical to the understanding of larval fish nursery areas of several economically and ecologically important fish species in Algoa Bay.

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Orientador: Carlos R. F. Grosso / Tese (doutorado) - Universidade Estadual de Campinas, Faculdade de Engenharia de Alimentos / Made available in DSpace on 2018-08-11T05:30:34Z (GMT). No. of bitstreams: 1 Correa_RenataMukai_D.pdf: 8022257 bytes, checksum: 6c8618cf4604060f0a0fddaede82dbb9 (MD5) Previous issue date: 2008 / Resumo: Este estudo teve como objetivo produzir micropartículas por gelificação iônica contendo, como recheios, constituintes nutricionalmente importantes para a alimentação de larvas de peixes. Na primeira parte deste estudo, foram desenvolvidos sistemas modelos compostos por micropartículas obtidas por gelificação iônica utilizando os polissacarídeos pectina e a mistura ternária: pectina/gelana/alginato e íons cálcio para formação das matrizes. Como conteúdo, foram incorporados compostos hidrofílicos (glicose e isolado protéico de soro de leite) na forma de micropartícula ou emulsão lipídica, utilizando uma mistura lipídica (gordura de peixe/ácido esteárico) contendo surfactantes (monoestearato de sorbitana+triesterato de sorbitana). Esses sistemas foram caracterizados em relação à eficiência de encapsulação, eficiência de inclusão, hidratação, tamanho médio e sua distribuição, morfologia e composição centesimal. Os sistemas preparados na forma de emulsão lipídica apresentaram uma distribuição mais homogênea do conteúdo das micropartículas e liberação de proteínas significativamente menor (p<0,05) do que os sistemas contendo micropartículas lipídicas, sendo os compostos por pectina/gelana/alginato, os que apresentaram a menor liberação observada (~5%). Na segunda parte deste estudo, os compostos hidrofílicos incorporados na forma de emulsão nos sistemas modelos foram substituídos por duas dietas experimentais. Seu preparo envolveu a obtenção e caracterização da gordura de peixe, concentrado protéico de peixe e dos náuplios de Artemia, utilizados na composição das dietas. Essas dietas foram otimizadas em relação ao conteúdo de proteínas, lipídeos e matéria seca, numa tentativa de alcançar o perfil nutricional dos náuplios de Artemia sp; e caracterizadas em relação à sua composição, tamanho, hidratação, morfologia, eficiência de encapsulação e liberação/retenção das proteínas. Ensaios in vivo foram feitos para avaliar a eficiência das dietas e in vitro para avaliar a digestibilidade dos compostos protéicos encapsulados. As dietas micropartículadas apresentaram perfis de composição protéica, lipídica e de matéria seca, próximos aos dos náuplios de Artemia (alimento vivo). A integridade foi mantida após a secagem, apresentando baixa liberação de proteína durante o período estudado (10% para micropartículas secas). Os ensaios in vivo e in vitro mostraram boa digestibilidade da massa protéica das dietas, manutenção da taxa de crescimento e razoáveis valores de sobrevivência (~50%), porém ainda não suficientes para suportar um crescimento similar ao alcançado quando foi utilizado alimento vivo / Abstract: The aim of this study was to produce microparticles by ionic gelation containing essential ingredients for larvae fish feeding. In the first part of this study two model systems of microparticles obtained by ionic gelation were developed. The wall materials used were pectin and one ternary mixture of polysaccharides: (pectin/gelan/alginate) and calcium ions. First, hydrophilic compounds (glucose and whey protein isolate) were used as core material to produce solid lipid microparticles or emulsions using the same lipid mixture (fish fat/stearic acid) plus surfactants (sorbitan monoestearate + sorbitan triestearate) and after the solid lipid microparticles and the emulsions were used as core to produce gelified microparticles. The systems were characterized with respect to encapsulation efficiency, inclusion efficiency, swelling capacity, size and distribution size, morphology and proximate composition The systems prepared with lipid emulsions presented more homogenous distribution of the core material and the protein release was lower than the systems containing lipid microparticles (p<0,05). The systems produced with ternary mixture presented the lowest protein release (5%). In the second part of the study the hydrophilic compounds incorporated as emulsions in the model systems were substituted by two experimental diets. The preparation of the diets included the extraction and characterization of fish fat, fish protein concentrate and Artemia nauplii. These materials were used in the diet formulations. Those diets were improved with respect to protein content, lipids, and dry matter, trying to mimetic the nutritional profile of Artemia náuplii and characterized as a function of composition, size, swelling, morphology, encapsulation efficiency and protein release. In vivo assay were made in order to evaluate diets efficiency and in vitro assay to evaluate protein digestibility. The content of protein, lipid and dry matter of the microparticles similar as observed for Artemia náuplii (live feed). Integrity was kept after dryer showed low protein release during the release period studied (10% to dry microparticles). In vivo and in vitro assays showed razonable digestibility, growing rates and also survival rates. However the microparticles could not sustained the same growing profile obtained when Artemia was used as the source of feed (alive feed). The results indicated that these particles can be improved as substitutes for live food (Artemia) / Doutorado / Consumo e Qualidade de Alimentos / Doutour em Alimentos e Nutrição

Distributions of larval fishes in the Winfield Pool, Kanawha River, West Virginia, were determined by sampling two sites with bongo and push nets. Cyprinids, clupeids, and <i>Aplodinotus grunniens</i> dominated collections. Main channel densities were a fraction of the densities along the shoreline, indicating the importance of the shoreline as a nursery. Diel trends in abundance were evident for several taxa, but were likely caused by diel changes in gear avoidance and distribution of larvae. Vertical trends in abundance were apparent for several taxa at the deeper and more lentic sampling site (lower pool). <i>Aplodinotus grunniens</i> were generally more abundant near the bottom, especially during daylight. Cyprinids were more abundant near the bottom in mid-June, but displayed no vertical trends on other sampling dates. Clupeids were more abundant at middepth or surface during daylight, while equally dispersed or near the bottom at night. Vertical trends were not evident at the shallower and more lotic site (upper pool) except for <i>Aplodinotus grunniens</i>, which displayed the same preference for the bottom, as at the lower site. / Master of Science

Nearshore hypoxia within the Northern California Current (NCC) system is a seasonal phenomenon caused by coastal upwelling and occurs mainly during late-summer and early fall. The effects of low oxygen levels on fish and invertebrate communities, particularly during early-life history stages, however, are poorly known for this area. I investigated the effects of hypoxia on the density, community structure, vertical and horizontal distribution of fish larvae and juveniles, as well as body condition of juveniles, along the central Oregon and Washington coasts during the summers of 2008 - 2011. During this sampling period, bottom dissolved oxygen (DO) values ranged from 0.49 to 9.85 ml l�����, and the number of hypoxic (e.g., < 1.4 ml l�����) stations sampled was low compared to 2002 and 2006 (only 54 sampling stations for the ichthyoplankton study out of 493, and only 12 stations out of 90 for the benthic juvenile study). From the ichthyoplankton study, I found that the overall density of fish larvae increased as bottom-DO values increased; however, the effect on individual species density was limited. Between 44.65 ��N and 46.00 ��N (~Florence, OR ��� Astoria, OR), fish larvae altered their vertical distribution when bottom-DO was low by rising in shallower water layers. From the benthic juvenile study, I found that English sole (Parophrys vetulus), butter sole (Isopsetta isolepis), speckled sanddab (Citharichthys stigmaeus) and Pacific sanddab (Citharichthys sordidus) dominated the catch with annual variation in abundances. Species composition, abundance and length had strong relationships with depth. Species abundance for English sole (< 75 mm), speckled sanddab (<100 mm) and Pacific sanddab also increased with increased bottom-DO. However, the body condition of butter sole (< 75 mm) and of large speckled sanddab (���100 mm) increased with decreased bottom-DO. Overall my research elucidates important patterns of larval and juvenile fish distribution within the NCC during summer. In both studies I have found a limited effect of DO on abundance, distribution and community assemblages. Variables other than DO, such as depth, season and location, dominated the explained variance of the intervening multivariate and univariate analysis. However, due to the paucity of samples during hypoxic events, continued monitoring of nearshore larval and juvenile species over varying hypoxic conditions is necessary for understanding the impact of hypoxia on these communities and subsequent adult populations. / Graduation date: 2013

Analysis of larval fish collected at four stations in a 330-ha cooling reservoir indicated Dorosoma spp. were most numerous at all stations, followed by Lepomis spp. and Percina Macrolepida. Largest numbers and greatest diversity of larval fish were found at the station least affected by thermal effluent; the mid-lake station provided the smallest numbers and least diversity. The two warmwater stations were intermediate, with similar numbers and diversity. Diversity and abundance of zooplankton between stations were similar to those of fish. The most abundant zooplankter (Bosmina) was generally selected against by Dorosoma, Lepomis and Micropterus spp. larvae except when the larvae were quite small ((10mm). Cyclopoid copepods were most often selected by all larvae.

Larval fish and zooplankton assemblages were studied in nine south and west coast estuaries in the cool-temperate and the cool/warm-temperate boundary region between June 2003 and March 2004. This study served to provide new information on previously unstudied estuaries and expand on existing knowledge of larval fish and zooplankton assemblages associated with various estuary types. The south and west coast estuaries sampled in this study showed lower salinities (12.2 - 13.7), lower water temperatures (14.5 - 16.9 °C) and higher turbidities (k = 0.02 - 0.04) in winter and spring while higher salinities (21.7 - 21.8), higher water temperatures (21.7 - 23.1°C) and lower turbidities (k <0.02) were observed in summer and autumn. Mean winter and summer water temperatures in estuaries were lower than those observed in warm-temperate and subtropical systems by other researchers. A total of 49274 larval fishes were caught, comprising 9 orders, 20 families, 29 genera and 47 taxa. The clupeid Gilchristella aestuaria (78.8 %) dominated the larval fish assemblages and occurred in all estuaries. The majority (70 %) of identified species are endemic to southern Africa and 96.4 % of larval fishes caught were estuary-resident species. The zooplankton study yielded a total of 44 taxa, comprising 7 phyla, >20 orders and >35 families. The copepod Pseudodiaptomus hessei dominated (59 %) the zooplankton and occurred in similar densities to those observed in other South African estuaries. Larval fish and zooplankton varied across seasons, peaking simultaneously in summer although zooplankton showed additional density peaks during the closed phase of some estuaries. Both plankton components were more abundant in the oligohaline and mesohaline zones within the estuaries. Freshwater input, estuary type and the biogeography of the area influenced the composition and structure of larval fish and zooplankton assemblages in these estuaries. The findings suggest that the estuaries are functioning as successful breeding areas for the larvae of endemic estuary-resident fish species and that these estuaries have to be managed to ensure an adequate freshwater supply to maintain the biological integrity of the ecosystem, specially the maintenance of the highly productive River-Estuary Interface (REI) regions.

The larval fish and zooplankton assemblages were studied in the permanently open Sundays Estuary on the south-east coast of South Africa, using standard boat-based plankton towing methods. A total of 8174 larval and early juvenile fishes were caught, representing 12 families and 23 taxa. The Clupeidae, Gobiidae and Blenniidae were the dominant fish families. Common species included Gilchristella aestuaria, Caffrogobius gilchristi, Omobranchus woodi, Liza dumerilii, Glossogobius callidus and Myxus capensis. Estuarine resident species (Category I) predominantly in the preflexion developmental stage, dominated the system. A total of 19 zooplankton taxa were recorded. Copepoda dominated the zooplankton community. Dominant species included Pseudodiaptomus hessei, Acartia longipatella, Halicyclops sp., Mesopodopsis wooldridgei, and the larvae of Paratylodiplax edwardsii and Hymenosoma orbiculare. Mean larval fish density showed similar trends seasonally, spatially and across salinity zones, with mean zooplankton density in the Sundays Estuary. Gut content analysis of five larval fish species: Gilchristella aestuaria, Pomadasys commersonnii, Monodactylus falciformis, Myxus capensis and Rhabdosargus holubi, revealed species specific diet and prey selection. Although larval fish diet contained a variety of prey items, guts were dominated by P. hessei, chironomid larvae, Corophium triaenonyx, copepod eggs and insect larvae. Physico-chemical drivers and the interactions between these two plankton communities provide information that enables a more holistic view of the dynamics occurring in the Sundays Estuary planktonic ecosystem.

This study determined the effect of hypoxia on air-breathing onset and physiological and morphological characters in larvae of the air breathing fishes Trichopodus trichopterus and Betta splendens. Larvae were exposed intermittently (12/12 h daily) to 20, 17, and 14 kPa of PO2 from 1 to 40 days post-fertilization. Survival, onset of air breathing, wet body mass, O2, Pcrit were measured every 5 dpf. Hypoxia advanced by 4 days, and delayed by 9 days, the onset of air breathing in Betta and Trichopodus, respectively. Hypoxia increased larval body length, wet mass, and labyrinth organ respiratory surface of Betta, but did not affect these factors in Trichopodus. Hypoxic exposure increased O2 by 50-100% at each day throughout larval development in Betta, but had no effect on larval Trichopodus. Hypoxia decreased Pcrit in Betta by 37%, but increased Pcrit in Trichopodus by 70%. Larval Betta reared in hypoxia showed a modified heart rate:opercular rate ratio (3:1 to 2:1), but these changes did not occur in Trichopodus. Compared to Betta, the blood of Trichopodus had a higher P50 and much smaller Bohr and Root effects. These interspecific differences are likely due to ecophysiological differences: Betta is a non- obligatory air-breather after 36 dpf with a slow lifestyle reflected in its low metabolism, while Trichopodus is an obligatory air-breather past 32 dpf with an athletic fast lifestyle and accompanying high metabolism.

The Deepwater Horizon oil spill released millions of barrels of oil into the Gulf of Mexico, impacting economically and ecologically important fishes. Polycyclic aromatic hydrocarbons (PAHs) present in the oil have been shown to cause developmental impairments in early life stage fishes, such as morphological and behavioral changes related to eye formation and visual processing following PAH exposure. Prior research reported reduced eye growth in open water, pelagic species, as well as reduced photoreceptor-specific transcription factors associated with eye development following exposure to crude oil. Though changes in transcriptomic-level pathways associated with vision and visual processing have been reported, it has yet to be determined how these changes relate to physiological or behavioral-level effects in fish. Therefore, the present studies evaluated the effect of weathered crude oil on eye development and visual function in mahi-mahi, red drum, sheepshead minnow, and zebrafish larvae. Fish were assessed through several visually-mediated behavioral assays, analyzed histologically and immunohistologically, along with subsequent transcriptomic analyses and associated gene expression changes. Larvae exposed to crude oil experienced significantly reduced abilities to exhibit optomotor or optokinetic responses relative to controls, with associated reductions in retinal development. Furthermore, genes associated with eye development and phototransduction were downregulated, with subsequent decreases in the immunofluorescence of neurological connections within the retina and a choroid-specific increase in apoptotic activity. We related oil-induced transcriptomic-level effects to morphological, physiological, and behavioral-level impairments in larval teleost fishes.