Ph.D. (Zoology) / Please refer to full text to view abstract

The Okavango is a vast inland delta system in northern Botswana which receives an annual flood from the highlands of southern Angola. There are distinct communities of fish in the Okavango which can be separated from each other by the physical characteristics of the different habitat types with which they co-evolved. This thesis provides an account of the biology and ecology of selected fish species in the Okavango Delta. Their response to the annual flood regime, and the environmental factors which limit their distribution and abundance, are examined. The thesis emphasizes the importance of water fluctuations in determining the nature of the fish fauna and the reaction of the fishes in terms of community structure, movements, breeding, predator-prey interactions and feeding. Four major ecotones were studied in the Okavango Delta. In the riverine floodplain and perennial swamp ecotones a higher species diversity was recorded than in the seasonal swamp and drainage rivers ecotones where diversity was lowest and comprised mainly of smaller fish species. A greater variety of habitat types was associated with the riverine floodplain and perennial swamp relative to the seasonal swamp and drainage rivers. The variety of habitat types between ecotones is associated with the degree of flood inundation in the respective ecotones. During the course of this study, annual recruitment of fish into the drainage rivers was from refugia in the seasonal swamp whereas the greatest degree of lateral and longitudinal movement was in the riverine floodplain and perennial swamp. Movement was in response to both biological requirements, such as availability of food and spawning sites, and physical features of the environment, such as the changing water depth. The total catch per unit effort (CPUE) of fish throughout the year was more constant in the riverine floodplain and perennial swamp than in the seasonal swamp and drainage rivers where CPUE fluctutated widely. An increase in CPUE during the duration of this study was apparent and related to the magnitude of the annual flood. In contrast to most other African wetlands, the arrival of the annual flood in the Okavango Delta coincides largely with the dry winter months. This situation presented an opportunity to compare the influence of floods and water temperature on the reproductive biology of the selected fish species. The results show a definite pattern and indicate that both the flood cycle and increased water temperatures greatly influence the breeding cycles of the selected species. The tilapia Oreochromis andersonii exhibited a considerable degree of phenotypic plasticity. Fish from the seasonally inundated areas showed a smaller mean size, egg size and larger number of eggs relative to fish in the perennially flooded areas. The size at sexual maturity was also smaller. These different reproductive characteristics exhibited by O. andersonii are dependent on the degree of water retention in the different habitats. The fishes of the Okavango have adopted other reproductive strategies to survive the changing environmental conditions brought about by an annual flood cycle. These strategies include the construction of foam nests, as described for Hepsetus odoe, for guarding the young and to provide an oxygen-rich environment. Two main non-piscivorous feeding pathways were identified in the Okavango. These are a detritus pathway based on dead plant and animal material, and an epiphyte pathway, based on algae and invertebrates that are attached to plant stems. Seasonal changes in diet in relation to the annual flood were recorded. The most dramrtic change was demonstrated by the catfish Clarias gariepinus which congregates in mass aggregations in the northern regions of the Delta and hunt in packs. Pack-hunting by catfish is a regular response to the annual fluctuations in water level. It is my conclusion that the main flow of biotic and abiotic stimuli within the Okavango Delta originates from the relatively hydrologically stable riverine floodplain and perennial swamp ecotones to the widely fluctuating seasonal swamp and drainage rivers ecotones. The relatively stable ecotones allow a diverse and biotically interdependent fish community to develop, whereas the widely fluctuating seasonal swamp and drainage rivers ecotones are characterized by a less diverse and interdependent fish community. The degree of abiotic and biotic interdependence among fish in an ecotone is very important for the long term management of the Okavango Delta. Potential developers have to determine whether the effect of a given action by man is likely to result in a long term disturbance or merely in an elastic recoil to a more or less similar state. Recommendations are made on the conservation and management of Okavango fishes taking into account the ecological characteristics of the delta.

There is a paucity of published information on fish utilization of salt marshes outside North America. This dissertation represents the first intensive examination of the ichthyofauna associated with salt marshes in southern Africa and examines the species composition, diversity, size structure, distribution and estuarine dependence of fishes that utilize salt marshes in the Kariega Estuary. The research was concentrated on Taylor's salt marsh, with comparative studies being conducted on other salt marshes and habitats within the marine dominated Kariega Estuary. The possible importance of salt marshes as feeding and refuge areas for fishes was examined, as was the role of salt marshes in the food web of the estuary. The fishes frequenting salt marshes in the Kariega Estuary were predominantly the juveniles of marine species, with Mugilidae being the dominant family. The ichthyofauna was distributed primarily in the intertidal creeks with very few specimens captured on the vegetated Spartina maritima and Sarcocomia perennis flats. The different reaches of the intertidal creek were characterised by distinct fish assemblages. The fish assemblages associated with the intertidal salt marsh creeks were significantly different from those found in the eelgrass beds, the other dominant intertidal habitat in the Kariega Estuary. The eelgrass beds were dominated by estuarine fish species and had a higher density and standing stock of fishes when compared to the salt marsh creeks. The diversity of fishes in the two habitats was however similar. The intertidal salt marsh creek ichthyofauna also differed significantly from that found in the main estuary channel. The creek ichthyofauna was dominated by 0+ juveniles while the main channel had many subadult and adult fishes. The channel habitat also had numerous large piscivorous fishes which were absent from the salt marsh creeks. The low number of piscivorous fishes, together with limited fish predation from other sources, may be the reason why salt marshes provide a refuge for juvenile fishes that frequent these habitats. Unlike previous studies on North American, Australian and European salt marshes, the dominant fish species that frequented Taylor's marsh were not recorded feeding extensively on the marsh, and those that did had a limited distribution. The role of fishes in the transfer of energy off the Kariega salt marshes is therefore likely to be minimal. A stable carbon isotope study on the dominant primary producers and consumers within the Kariega Estuary revealed that detritus originating from the high lying salt marsh plants Sarcocornia perennis and Chenolea diffusa was not utilized by fishes in the Kariega Estuary. Preliminary results indicated that the cord grass Spartina maritima may be an important energy source to the fishes in the Kariega Estuary, but further research is needed to confirm this.

The food habits, survival rates, and abundance of four predatory fish species (striped bass, walleye, largemouth bass, smallmouth bass) were determined and combined with information on energetics and growth to quantitatively assess predator-prey interactions in Smith Mountain Lake, a large hydroelectric reservoir in south-central Virginia. A total of 1871 stomachs of the four species was examined from fish collections between April 1983 and December 1984. Food habits of each predatory species were assessed and compared by season using Schoener's (1970) diet overlap index. Significant diet overlap occurred between the pelagic predators (striped bass and walleye) and between the littoral black basses (largemouth bass and smallmouth bass) in all seasons and locations where sufficient stomach samples were collected. Survival and abundance estimates for the four predators were derived from several data sets. First-year survival of striped bass fingerlings averaged 20.8% for an 11-year period (1973 to 1983) and ranged from 3.9% to 54.3%. Average survival of age-0 largemouth bass and smallmouth bass was 53% and 45%, respectively, for the period 1979 to 1983. Species-specific survival rates for predators age 2 and older ranged from 29% to 59%. Of the predators age 1 and older, largemouth bass were the most numerous at an estimated density of 61.2/ha, followed by striped bass at 16.3/ha. Age 1 and older smallmouth bass and walleye were less abundant, at densities of 8.2 and 2.0/ha, respectively. A bioenergetics model was developed for striped bass and, with models developed for walleye and largemouth bass, used to estimate annual consumption of alewives and gizzard shad by the four piscivorous species. Annually, striped bass consumed the greatest amount of adult and young-of-year alewives, whereas largemouth bass ate nearly 70% of the total shad biomass consumed by all predators. A comparison of predator demand to clupeid supply substantiated diet overlap data; namely, that native and introduced predators were compatible in Smith Mountain Lake. The striped bass bioenergetics model was used to make inferences about potential stocking strategies for striped bass based on availability of age-1 and older alewives. A stocking rate of 20-24 fingerlings/ha appears to maximize production of striped bass and minimize potential competitive interactions between striped bass and native black bass in Smith Mountain Lake. / Ph. D.

Local and regional patterns of distribution and abundance are documented in marine rocky-reef fishes. Chapter one describes limits of distribution and patterns of density variation of two fishes in a northern Gulf of California intertidal shore. The density of Sonora gobies (Gobiosoma chiquita) increases with tidal height over its intertidal range (-1.2 to 0.9 m), whereas the density of patchscale gobies (Gobiosoma sp.) decreases from the subtidal zone to 0.6 m above mean low water level. Both species exhibit higher densities during the warmer season when intertidal temperature gradients are weaker than during the colder season. Sonora gobies show a broader range of temperature tolerance than patchscale gobies but there is no evidence of shifts in distribution between seasons suggesting that the distributions of these species are not determined by temperature. Interspecific interactions may contribute to the patterns of intertidal distribution and abundance in these species despite the rigorous physical environment of the area. Chapter two documents a positive correlation between average local abundance and extent of geographic distribution in rocky-shore fishes from the Gulf of California. This correlation is not an artifact of sampling an arbitrarily defined region and is unlikely to be an artifact of sampling bias. The occurrence of this relationship in a variety of organisms suggests that the processes responsible for this pattern are likely to be similar in both terrestrial and marine environments despite fundamental differences between the two. Chapter three demonstrates that egg type and adult body size explain a considerable portion of the variation in extent of geographic range in marine reef fishes. Species with pelagic eggs have larger geographic ranges, longer larval lives, and larger body sizes than species with non-pelagic eggs. Small species with non-pelagic eggs show smaller geographic ranges than any other combination of body size and egg type. These biogeographic patterns predict a greater degree of genetic isolation among populations, and a greater species turnover over evolutionary time in clades of small species with non-pelagic eggs than in clades of species with other combinations of body size and egg type.

Estuaries in South Africa are important nursery areas for the juveniles of many fish species. The condition of many of these systems has, however, deteriorated as a result of degradation caused by urban, industrial and agricultural development. An assessment of the role of harbours, particularly in KwaZulu Natal, as nursery grounds has therefore become an important issue. Durban Bay has undergone considerable changes since the mid-1800s and further developments are proposed. If these developments continue, they will result in the loss of large areas of the sandbanks, but Portnet has recognised the need to integrate environmental considerations into future port developments and operations. It was the overall aim of this study to establish the nature of the association of the juveniles of four common fish species viz. Pomadasys commersonnii, Gerres filamentosus, Liza dumerilii and Leiognathus equula with these sandbanks and, thereby assess the impact of their removal. It was found that all species were abundant on the sandbanks and that the diets of P. commersonnii, G. fiiamentosus and L. equuia were very similar, consisting primarily of bivalve siphon tips, benthic crustaceans and polychaetes. The respective contributions of each food type to the diet varied with species. The diet of L. dumerilii differed from that of the other three species, consisting primarily of benthic floc, foraminiferans, ostracods and sponge spicules. Despite differences in selectivity, it was concluded, from studies of the benthos in the harbour, that all four species, irrespective of size, were feeding on these sandbanks, as opposed to in the channels, throughout the year. Removal of the sandbanks for the construction of a new pier would, thus, result in the elimination of important feeding grounds for the juveniles of these four species. / Thesis (M.Sc.)-University of Natal, 1994.

Florida’s Indian River Lagoon (IRL) has experienced myriad anthropogenic impacts and knowledge on elasmobranchs (sharks and rays) in the southern IRL is lacking. A fishery independent survey (longline/gillnet) was implemented to 1) assess the effects of bait type [striped mullet (Mugil cephalus) versus Atlantic mackerel (Scomber scombrus)] and mesh size (15.2 cm versus 20.3 cm stretch mesh) on elasmobranch species composition, catch-per-unit effort, and size distributions and 2) characterize elasmobranch abundance and distribution. From 2016 - 2018, 630 individuals (16 species) were captured, more often in the gillnet than the longline. Catch-per-unit-effort was significantly higher with mullet than mackerel. Species composition differed among gears. Although dependent on gear, there was evidence of seasonal and spatial patterns in abundance and species composition. This study provides the first baseline abundance indices for many elasmobranchs in the IRL and develops the capacity to understand how elasmobranchs may respond to changes in this highly modified estuary. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2019. / FAU Electronic Theses and Dissertations Collection

Thesis (Ph. D. (Zoology)) -- University of Limpopo, 2009. / Aspects of the ecology and biology of the Lowveld largescale yellowfish (Labeobarbus marequensis) were studied in the Luvuvhu River over a period of three years. In this study the origin of the species, its phylogenetic relation to the other South African yellowfish species, its distribution and gross morphology are discussed and the lack of knowledge regarding aspects of the species is pointed out. The study area is identified and its geology, hydrology, climate and water quality as well as the historic distribution of the species is discussed. Adapted “truss” techniques were applied to measure and calculate the morphometric features related to feeding and habitat preference of the species. From this data the habitat preferences and requirements were inferred after which it was compared to data obtained during field surveys. The study of the breeding biology and ecology of the species included investigations of gonad and egg structure and development as well as seasonal surveys of selected breeding sites. The diet of the species was established through stomach content analyses and related to the digestive tract morphology. Data obtained from the Xikundu fishway was used to establish the migratory behaviour. Results show that nine distinct stanzas or growth phases, each with its own morphometric characteristics, were identified. The body form, and some morphological aspects, of the species make it suitable to cope with flowing water. Ontogenetic changes in body form and the identified morphological aspects were observed and related to the habitat preferences of the stanzas. A distinct ontogenetic shift in preferred habitat was illustrated. The species was shown to be fractional spawner with two spawning events per annum. A major extended spawning event occurred during spring or early summer and coincided with a temperature increase and in particular with an increase in flow. Breeding occurred at sites with fast flowing water over cobble or boulder beds and it was observed that the presence of nursery areas related to breeding biotopes was extremely important. Although the diet of the species was dominated by plant and algal matter, juvenile stanzas ingested large amounts of animal material. It was found that the spatial movements of the species could be characterised as migrations and that breeding and dispersal migrations occurred.

Thesis (M.Sc. ( Physiology )) --University of Limpopo, 2011 / Refer to document / the National Research Foundation

Understanding the dynamics of open marine populations is difficult. Ecological processes may vary with the spatial structure of the habitat, and this variation may subsequently affect demographic rates. In a series of observational and experimental studies in the Bahamas, I examined the roles of emigration, mortality, and predation in the local population dynamics of juvenile coral-reef fishes. First, I documented mortality and emigration rates in populations of bluehead and yellowhead wrasse. Assuming that all losses were due solely to mortality would have significantly underestimated survivorship for both species on patch reefs, and for yellowheads on continuous reefs. Mortality differed between species, but emigration did not differ between species or reef types. Mortality of blueheads was density-dependent with respect to both conspecific density and total wrasse density on continuous reefs. In contrast, mortality of yellowheads varied inversely with the density of blueheads on patch reefs. Emigration rates varied inversely with distance to the nearest reef inhabited by conspecifics. In subsequent experiments, I manipulated densities of yellowhead wrasse and beaugregory damselfish, and determined that the relationship between density and mortality varied with reef spatial structure. On natural reefs, mortality rates of the wrasse were highly variable among reefs. On artificial reefs, mortality rates of both species were density-dependent on spatially isolated reefs, yet high and density-independent on aggregated reefs. Heterogeneity in the spatial structure of natural reefs likely caused variation in predation risk that resulted in high variability in mortality rates compared to artificial reefs. A final experiment demonstrated that a single resident predator caused substantial mortality of the damselfish, regardless of reef spacing. Patterns suggested that resident predators caused density-dependent mortality in their prey through a type 3 functional response on all reefs, but on aggregated reefs this density dependence was overwhelmed by high, density-independent mortality caused by transient predators. These results (1) suggest post-settlement movement should be better documented in reef-fish experiments, (2) demonstrate that the role of early post-settlement processes, such as predation, can be modified by the spatial structure of the habitat, and (3) have ramifications for the implementation of marine reserves. / Graduation date: 2004