University of Technology, Sydney. Faculty of Science. / In the last 100 years there have been dramatic declines in the range and abundance of native freshwater fish in south-eastern Australia. These declines have been attributed to habitat loss and degradation (including river regulation, water quality, erosion/siltation, instream cover and riparian vegetation), alien fish species, overfishing, and the obstruction of fish passage. In south-eastern Australia there are 86 species of freshwater fish and 36 of these have some migratory component of their life history that requires free passage along streams. The migrations of these fish in this region have been inhibited or prevented by the existence of more than 1500 dams and weirs. To mitigate this impact there are only 69 fishways. Most of these fishways are based on designs suitable for the swimming ability and behaviour of salmonids from the Northern Hemisphere. There are, however, no native salmonids in Australia. I assessed one of these salmonid fishways, at Euston on the Murray River, for its suitability for passing native fish. Fish were trapped at the top and bottom of the fishway over eight paired days. Although this fishway has one of the lowest slopes of the older fishways, and therefore potentially one of the easiest to ascend, very few of the fish that entered the fishway could get to the top. For example, 777 +/- 238 [x +/- s.e.] golden perch (Macquaria ambigua) per day entered the fishway but only 4 +/- 2 per day were collected at the top of the fishway. This and other data highlighted two points: i) the ineffectiveness of the salmonid-type fishways for native fish; and ii) assessing fishways by counting fish at the top only, although widely used throughout the world, is insufficient to assess the performance of a fishway. Counts of fish from the top of a fishway can, however, be useful to monitor fish populations over time. An excellent example of this is provided by long-term monitoring of the Euston fishway, which shows massive declines in the upstream movements of silver perch (Bidyanus bidyanus), Murray cod (Maccullochella peelii peelii) and Macquarie perch (Macquaria australasica) between 1940-45 and 1987-90, indicating corresponding declines in the populations of these species. The failure of salmonid fishways for non-salmonid fishes has been a common experience throughout the world. It stems partly from a lack of knowledge of the migratory patterns of non-salmonid fish, and from a lack of quantitative experimental research into the swimming ability and behaviour of these fish in fishways. To redress this situation for south-eastern Australia, I tested fish in experimental fishways in a hydraulics laboratory. The fishway design tested was the vertical-slot fishway, which is a pool-type fishway where water flows between each pool via a vertical slot. The design was considered to potentially suit the hydrology of Australian rivers and the behaviour of native fish. For these experiments I selected fish species and life stages representative of the migratory fish fauna of the two major drainages of south-eastern Australia. For the south-eastern coastal rivers I chose juvenile Australian bass (Macquaria novemaculeata)[mean lengths of 40, 64 and 93 mm] and barramundi (Lates calcarifer) [43 mm]. These two species are catadromous, with the adults migrating downstream to the estuary to breed and the juveniles migrating upstream. For the large inland Murray-Darling river system I chose adult golden perch (Macquaria ambigua) [441 mm] and silver perch(Bidyanus bidyanus) [258 mm]. At the beginning of this study, adults of these two species were considered to be the main life stage migrating upstream. In the laboratory experiments fish were tested at different water velocities and probit analysis was applied to the proportion of fish that negotiated these velocities. I used this approach to produce values which I called the NV90 and the NV95, which are the maximum water velocities that 90% and 95% of the fish could negotiate in the fishway. For bass, barramundi and golden perch these values ranged from 0.7 to 1.8 m s-1. These values are well below the standard maximum water velocity for salmonid fishways of 2.4 m s-l. The silver perch results were too variable to analyse. The data obtained from the laboratory experiments were used by water resource agencies to build eight new vertical-slot fishways in coastal and inland rivers of southeastern Australia. One of the largest of these new fishways was at Torrumbarry Weir on the Murray River, which consists of 38 pools, each 3 m long, ascending a 6.5 m high weir. The fishway, if successful, would provide access to 350 km of habitat above the weir. To determine whether or not the fishway was successful in passing native migratory fish it was assessed for 2.5 years by: i) sampling monthly above and below the fishway with a standard set of independent, replicated nets; and ii) sampling within the fishway. The netting showed that there were major aggregations of migratory fish below the weir when the fishway was not operational. However, when the fishway was completed and operational, 13 months after the commencement of sampling, there were no further major aggregations of migratory fish below the weir. These data, combined with high numbers of fish successfully ascending the fishway, indicated the success of this vertical-slot fishway design. It was estimated that from February 1991 to June 1993 20,7 14 native fish and 16,595 alien fish (all carp [Cyprinus carpio]) had successfully ascended the fishway. Sampling at the top and bottom of the fishway showed that the fishway passed almost all the species and sizes classes of native migratory fish, except for Australian smelt (Retropinna semoni). The latter is a small species 15 to 40 mm long that only entered the lower few pools of the fishway. The widespread distribution of this species indicates the migration is facultative. Experiments within the fishway showed that the laboratory experiments had underestimated swimming ability. However, it was discovered that fish still needed over 1.5 hours to ascend the full length of the fishway. In addition, some species only migrated upstream during daylight and if their ascent of the fishway was not completed in daylight the fish moved back down the fishway. I concluded that the original water velocity criterion from the laboratory experiments was appropriate and that future fishways need to consider ascent time and fishway length as well as water velocity. I also concluded that it is more difficult to obtain realistic results from 'off-site' experiments, where fish are transported to a laboratory or other facility, than from in situ experiments where naturally migrating fish are used and are not handled until the end of the experiment. Sampling at Torrumbarry Weir provided detailed information on the biology of the migratory fish species, which is essential to designing effective fishways. Carp(Cyprinus carpio), an introduced or alien species, and bony herring were newly identified as migratory, and golden perch and silver perch were confirmed as migratory. A major finding was that 95% of golden perch and 87% of silver perch moving upstream were immature fish. Previously the upstream movement of immature fish in this river system was considered insignificant. Fortunately the conservative water velocities in the Torrumbarry fishway accommodated these smaller fish(approximately 100 to 300 mm in length). The reason for the large numbers of immature fish migrating upstream is not clear, but it may be to optimise feeding, enhance colonisation, or to compensate for the downstream drift of the pelagic eggs and larvae. Migration of all species was seasonal. Spring, summer and early autumn were the main periods of upstream movement for native fish, and carp moved upstream in spring and early summer. Migration of carp was stimulated by rising water temperature only, but golden perch and silver perch were stimulated to move upstream by small changes in river levels. This small scale variation in streamflow is frequently suppressed by river regulation, and this is likely to have contributed to the significant decrease in the numbers of migrating native fish. Upstream migration of all species often occurred during low flows, as well as higher flows. This also occurs in coastal rivers of southeastern Australia. For both the coastal and inland rivers of this region it will be important to design fishways and environmental flow releases to accommodate this aspect of fish migration and the often semi-arid hydrology of these streams. Golden perch and silver perch were aged using sagittal otoliths and validated using known-age fish. The data showed that the immature fish were all over one year old, suggesting that younger fish are not migrating upstream. More research is needed to determine the location and habitats of the less than one year old fish. Ageing and examination of gonads indicated the size and age at maturity for these fish. This suggested that minimum size limits currently used to regulate the recreational fishery are not allowing fish to reach maturity. Golden perch and silver perch were found to be long-lived fish, up to 26 and 27 years respectively. Interestingly, samples of these two species from other rivers within the Murray-Darling river system show that the maximum sizes of these fish can vary significantly between rivers, suggesting that the ecology of different rivers within this large river system varies considerably. The development of fishways for non-salmonid fishes throughout the world has frequently met with failure. From the work in the present study and from reviewing other work I suggest there are five steps for the development of effective fishways. 1. Determine which fish species are migratory: - it is important to identify the smallest and largest fish that are migratory, as this affects the initial choice of the size of the fishway to test. 2. Test fish in an experimental fishway: - in situ experiments are recommended; - avoid handling of fish before and during experiments. 3 Design the fishway: - first decide on the location of the fishway entrance; - extrapolate research results with caution; - do not reduce pool sizes from the experimental model; - avoid tunnels; - design the fishway to operate over the full range of flows during which fish migrate. 4. Link the fishway with the operation of the dam or weir: - maintain flow and temperature regimes that stimulate migration; - manage flow releases over the spillway to guide fish to the fishway entrance. 5. Assess the fishway: - use quantitative and relevant performance criteria to assess the fishway and not only counts of fish from the top of the fishway. The most common strategy in the past has been to design the fishway and ignore steps 1, 2, 4 and 5. With fishways being increasingly recognised as important tools in the rehabilitation of aquatic biota in temperate river systems, and as a potential tool in the development of water resources in tropical rivers, it is essential that they are appropriately designed, constructed, and assessed. Otherwise the mistakes of the past will very likely be repeated.

This collection of papers comprises four sections. The first section deals with the helminth and arthropod parasites recovered from a variety of mammalian hosts, and consists of four chapters. The first chapter deals with the taxonomy of the parasites of mammalian hosts, where some 15 nematode species were either newly described, redescribed or descriptions amended, and the immature stages of an oestrid fly and the adults of two hippoboscid flies described. The second describes the seasonal occurrence of arthropod and helminth parasites recovered from approximately 1 380 antelope, scrub hares, warthogs and bushpigs. In the third chapter some miscellaneous natural and experimental findings of helminths in free-living hosts are presented, amongst others several new host-parasite associations and the proceedings of symposia, while the fourth chapter deals with the pathology of natural infections of impalas with Cooperiodes hepaticae, kudus with Elaeophora sagitta and buffaloes with Parafilaria bassoni. The second section deals with the parasites of freshwater fishes. In the taxonomic part of this section, Chapter 1, one trematode genus is redescribed, and one new trematode species and 14 new nematode species described. In the second chapter, the seasonal occurrence of the helminth parasites of approximately 700 freshwater fish representing 14 species is presented. The third part deals with the helminths of lizards, snakes and crocodiles, where a new Paraspirura species, a new Madathamugadia species and some 14 new species, subspecies and forms of subspecies of the oxyurid genera Spauligodon, Skrjabinodon, Thelandros and Tachygonetria were described. A comprehensive host-parasite list of snakes and lizards is included, as is an equally comprehensive host-parasite list of the pentastome parasites of crocodiles. In the fourth part, two new Tetrameres species are described and the population dynamics of guineafowls and Swainson’s spurfowl discussed. A complete list of the helminth parasites of guineafowls is listed, together with an extended host list of these parasites. / Thesis (PhD)--University of Pretoria, 2009. / Veterinary Tropical Diseases / unrestricted

Physiological and behavioral effects of exposure of fathead minnows (Pimephales promelas) and channel catfish (Ictalurus punctatus) to selenate-selenium (Se) and nitrite were investigated.

No description available.

Evolutionary history has been recognized as an important factor in studying ecological communities. Lake fish communities have had limited consideration from a community phylogenetics perspective and present the opportunity to include trophic interactions in the analysis. For the species under study, I used known phylogenies from the literature and genetic information to determine relative branch lengths and phylogenetic relationships by Bayesian inference. Using the resultant phylogenetic tree and fish community data, the phylogenetic community structure was determined for the lakes in the Manitoulin Island and LaCloche regions of Ontario, Canada. Evidence of phylogenetic structuring was found, particularly associated with piscivory, winter hypoxia tolerance, and thermal preferences for deep coldwater lakes. Although the majority of the lakes were weakly structured from a phylogenetic perspective, significant trends were nonetheless apparent; especially when further informed by examining species-specific trends, demonstrating that evolutionary history can play a role in structuring freshwater fish communities.

Evolutionary history has been recognized as an important factor in studying ecological communities. Lake fish communities have had limited consideration from a community phylogenetics perspective and present the opportunity to include trophic interactions in the analysis. For the species under study, I used known phylogenies from the literature and genetic information to determine relative branch lengths and phylogenetic relationships by Bayesian inference. Using the resultant phylogenetic tree and fish community data, the phylogenetic community structure was determined for the lakes in the Manitoulin Island and LaCloche regions of Ontario, Canada. Evidence of phylogenetic structuring was found, particularly associated with piscivory, winter hypoxia tolerance, and thermal preferences for deep coldwater lakes. Although the majority of the lakes were weakly structured from a phylogenetic perspective, significant trends were nonetheless apparent; especially when further informed by examining species-specific trends, demonstrating that evolutionary history can play a role in structuring freshwater fish communities.

Characterization of smallmouth bass (Micropterus dolomieu) interaction with native species assemblages, especially salmonids, in lakes throughout BC is prerequisite to identification of high-risk systems warranting on-going monitoring. Therefore this project addresses the following issues: How does smallmouth bass (SMB) trophic profile overlap with native species and does it vary across time and space? Schoener’s index of dietary overlap was not significant between SMB and rainbow trout (Oncorhynchus mykiss; α=0.406, 0.257), or cutthroat trout (Oncorhynchus clarkia; α=0.145, 0.29). Prey fish levels (Ei =35.4%) and the total energetic density (14.91±4.74J/g) of the cutthroat trout diet from Weston Lake (SMB free) were significantly higher compared to the diet of cutthroat trout from Cusheon Lake (Ei =3.3% and 7.69±1.93J/g) where non-native SMB have been introduced. Within the Vancouver Island study lakes, gut-content analysis revealed available signal crayfish serve as an important prey resource in the SMB diet (Ei =34%). What capacity do SMB have to take advantage of seasonal pulses of forage? SMB displayed the ability to rapidly (within 24hrs.) alter their diet and consumption levels (4.7 times higher) to maximize on pulses of rainbow trout fry following a stocking event. SMB did not spatially overlap with spring peaks in salmonid fry runs in the Okanagan lakes, as water temperature remained around the 10°C threshold when SMB are not yet active. Kokanee (Oncorhynchus nerka) fry did however make up Ei =83% of the yellow perch (Perca flavescens) diet. SMB are thriving in locations suspected to be on the limit for their environmental suitability through increased size at age for SMB in the Cariboo region in order to adapt to a longer (by 62 days) winter starvation period. SMB are a generalist predator able to adapt and thrive in very different systems; high vs. low productivity, few or many fish species, crayfish or no crayfish. The likely impacts of this in BC could include shifts in the diet of other fish species and increased costs associated with only stocking larger catchable sized trout in lakes containing non-native SMB. Policy recommendations based on our findings are that SMB introductions into systems that have rainbow/cutthroat trout are likely to cause the highest impacts on our native fisheries in BC if the systems are; highly productive, contain a high diversity of small bodied fish and invertebrate species, lack signal crayfish and large lakes with predominant littoral zones and complex shorelines. / Graduate / 0793 / 0329 / 0792 / mbeck@uvic.ca

Population fragmentation is a common symptom of the decline of species, including freshwater fishes. It occurs naturally, but has also proliferated in response to human interventions that increase the prevalence and intensity of isolating barriers and events. In regulated rivers, for example, fish are affected by the loss of connectivity between habitats that is associated with hydrological changes. The process has evolutionary consequences by limiting gene flow, reducing genetic diversity and rendering the isolates vulnerable to local environmental changes. Comparative studies of related species may help to elucidate the causes and consequences of fragmentation. For example, they may identify habitat features that influence the spatial separation of congeneric species. An opportunity for such a study arises with small fishes (Atherinidae) in the intensively-regulated River Murray, southeastern Australia. Whereas the unspecked hardyhead Craterocephalus stercusmuscarum fulvus is widespread and abundant, the Murray hardyhead C. fluviatilis has a patchy distribution and is listed as 'endangered‘ by the International Union for Conservation of Nature and 'vulnerable‘ under the Australian Environment Protection and Biodiversity Conservation Act 1999. These two species rarely cohabit, implying that they could be separated by particular habitat characteristics. In the past, several species of Craterocephalus, including C. fluviatilis and the Darling River hardyhead C. amniculus, have been regarded as C. eyresii sensu lato. The taxonomic separation of C. s. fulvus has been confirmed, but some doubt remains about the relationship of C. fluviatilis and C. amniculus. This issue needs resolution to ensure that appropriate targets are set for conservation. This study is a comparative investigation of the aforementioned species. It was designed (1) to identify the habitat characteristics that influence the distribution and abundance of C. fluviatilis and, given that salinity emerged as a key factor, (2) to explore the biological implications of salinity through a comparative study of osmoregulation in C. fluviatilis and C. s. fulvus, (3) to determine whether the osmoregulatory responses of population isolates of C. fluviatilis differ at varying salinities, and (4) to evaluate the genetic population structure of C. fluviatilis, confirm its taxonomic separation from C. amniculus and identify genetic 'management units‘ for conservation. Field sampling showed that C. fluviatilis is confined mainly to saline waters (0.4-20‰), whereas C. s. fulvus is absent from salinities >7‰. Comparisons were made of osmoregulation in these two taxa over a salinity range of 0.03-85‰, with additional reference to the small-mouth hardyhead Atherinosoma microstoma, a related estuarine species that tolerates salinities >94‰. The three species all are euryhaline, although the osmoregulatory ability of C. s. fulvus falters above about 35‰ salinity. C. fluviatilis is a better osmoregulator than A. microstoma at salinities <1‰, but both species tolerate hypersaline conditions (85‰). Osmoregulation was compared in C. fluviatilis from two isolated populations in different salinity regimes (Wyngate: 0.4-1.5‰, Disher Creek: c. 1.0-45‰) to determine whether they show related phenotypic differences. Fish from both populations remained healthy at salinities from 5-65‰. The Disher Creek population maintained a significantly lower blood osmotic concentration than the Wyngate population at salinities ≤1‰, suggesting that there is a physiological difference between them. The genetic population structure of C. fluviatilis and its taxonomic distinction from C. amniculus were investigated using complementary allozyme and mtDNA markers. This confirmed that C. fluviatilis is genetically distinct from its sister taxon, C. amniculus. It also identified several genetically-defined 'management units‘ as a framework for future conservation. Further, it revealed that C. fluviatilis in habitats downstream of Lock 1 on the Murray (274 km from the river mouth) displays a genetic signature indicating introgression with C. amniculus. Clearly, these findings have implications for the conservation of C. fluviatilis. For example, isolates can be prioritised for protection, and re-introduction programs can be modified accordingly. The findings may be applied to other freshwater fish, especially populations of closely-related species subject to salinisation or other stressors, and they may also contribute toward understanding of the factors and processes underlying rarity and fragmentation. It is clear that salinity can be a significant factor in population fragmentation, and that closelyrelated species with similar ranges may be segregated by differences in osmoregulatory ability. / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1363300 / Thesis (Ph.D.) -- University of Adelaide, School of Earth and Environmental Sciences, 2009

Redeskription of three bothriocephalid tapeworms Tetracampos ciliotheca, Polyonchobothrium polypteri and Senga gordoni from African freshwater fish.

A total of 670 critical thermal maxima (CTMax) and minima (CTMin) were determined for three freshwater fishes acclimated to three constant temperatures and a diel regimen cycling between the lowest and highest acclimation temperatures. In all species temperature tolerance was directly related to acclimation temperature and slopes relating these variables indicate that acclimation temperature has a greater influence on tolerance of low rather than high temperatures. CTMax and CTMin values generated following exposure to 32 days of oscillating temperatures indicate that in general, fishes had temperature tolerance acclimation states consistent with the average temperature and not either the highest or lowest temperature of the diel cycle.