Thesis (MSc)-- University of Stellenbosch, 2007. / Masters of Science (Geographic Information Systems - Environmental Geography) Bibliography. Also available via the Internet.

>Magister Scientiae - MSc / The Cape Floristic Region, situated at the southern tip of Africa, is one of the world’s most botanically diverse regions. The biodiversity of this region faces various types of threats, which can be divided into three main categories, namely increasing urbanisation, agriculture expansion, and the spread of invasive alien vegetation. It has been shown that botanically diverse areas are more prone to invasion by invasive alien plant (IAP) species. The Hawequa conservation area, in the south-western Cape, is particularly botanically diverse, such that it is very prone to aggressive invasion by IAP species. Therefore, conservation management of the Hawequa conservation area urgently need to map, prioritise and clear IAP species. Due to the topographical complexity of this mountainous area, it is not possible to map the distribution of IAP species throughout the protected area by conventional field methods. Remote sensing may be able to provide a suitable alternative for mapping. The aim of this research was to assess various image classification methods,using two types of high-resolution imagery (colour aerial photography and WorldView-2 satellite imagery), in order to map the distribution of IAP species, including small stands and individuals. Specifically, the study will focus on mapping Pinus and Acacia spp. in a study site of approximately 9 225ha in the Hawequa conservation rea. Supervised classification was performed using two different protocols, namely per-pixel and per-field. For the per-pixel classification Iterative Self-Organising Data Analyses Technique (ISODATA) was used, a method supported by ERDAS Imagine. The per-field (object-based) classification was done using fractal net evolution approach (FNEA), a method supported by eCognition. The per-pixel classification mapped the extent of Pinus and Acacia spp. in the study area as 1 205.8 ha (13%) and 80.1 ha (0.9%) respectively, and the perfield classification as 1 120.9 ha (12.1%) and 96.8 ha (1.1%) respectively. Accuracy assessments performed on the resulting thematic maps generated from these two classification methods had a kappa coefficient of 0.700 for the per-pixel classification and 0.408 for the per-field classification. Even though the overall extent of IAP species for each of these methods is similar, the reliability of the actual thematic maps is vastly different. These findings suggest that mapping IAP species (especially Pinus spp.) stands and individuals in highly diverse natural veld, the traditional per-pixel classification still proves to be the best method when using high-resolution images. In the case of Acacia spp., which often occurs along rivers, it is more difficult to distinguish them from the natural riverine vegetation. Using WorldView-2 satellite images for large areas can be very expensive (approximately R120 per km2 in 2011), but in comparison with the cost of mapping and the subsequent clearing, especially in inaccessible areas, it might be a worthwhile investment. Alternative image sources such as the high resolution digital colour infrared aerial photography must be considered as a good source for mapping IAP species in high altitude areas.

Market demand for the fynbos-derived honeybush (Cyclopia spp.) tea is on the rise, and there is an urgent need for better conservation of wild Cyclopia populations and for a shift to sustainable cultivation. Rooibos is another popular fynbos product that underwent exponential market growth over the last two decades but this resulted in large-scale conversion of pristine mountain fynbos to intensively-used crop lands. Adopting a conservation agriculture approach in expanding indigenous products will help in conserving biodiversity and ecosystem processes in this global biodiversity hotspot. Conservation agriculture of indigenous fynbos products grown in the Cape Floristic Region (CFR) should follow five main principles in order to maximise biodiversity conservation alongside agriculture. These principles are: 1) maintain high diversity at all levels, 2) conserve soil structure and processes, 3) conserve and restore natural ecosystem processes, 4) promote ecosystem stability and self-perpetuation, and 5) maintain natural areas as sources of ecosystem components. Given the negative ecological consequences of the industrialisation of the rooibos industry, it would be in the interest of biodiversity conservation, and even of agriculture, to apply these principles to honeybush cultivation. In order to prevent further fynbos habitat loss, cultivation of honeybush could be catalysed on old fields rather than in ploughed or cleared fynbos. Here I compare germination, growth and survival of two species (Cyclopia intermedia E.Mey. and C. subternata Vogel) between different land use types (ploughed lands, old fields and intact fynbos) and treatments (cleared and uncleared) in the Langkloof, Eastern Cape, over one year. Plots of each land use type were subject to each of these two treatments, although the ploughed plot constituted only a cleared treatment. Growth was highest on ploughed land, while survival and growth were lowest in uncleared fynbos. Cleared fynbos had the lowest germination success in both species, with the other sites and treatments coming out roughly the same. These results show that although ploughed lands give highest yields, growth and survival on old fields without ploughing is comparable with that on ploughed lands and is therefore a feasible alternative. Understanding the recruitment dynamics of honeybush is imperative for adequate conservation of wild populations. Furthermore, understanding this ecological aspect of the genus will help in developing the honeybush industry as a sustainable, agroecological market that uses semi-natural populations for production. Although Cyclopia species are early-successional species that germinate after fire, recruitment of Cyclopia pubescens Eckl. & Zeyh. continues throughout the inter-fire period. Cyclopia pubescens populations near Port Elizabeth were described according to their age structure and plant densities to discern possible density-dependent recruitment effects. Results showed that dense stands for the most part do not support high post-fire recruitment. This gives insight into suitable planting densities for new or restore populations and into management guidelines for remnant populations of threatened species. This thesis highlights important issues facing the honeybush industry. Mainstreaming biodiversity conservation into honeybush production is achievable, given that the industry is still relatively young, but this will require further research and strong market leadership.

Magister Scientiae (Biodiversity and Conservation Biology) - MSc (Biodiv and Cons Biol) / Areas of high biodiversity and complex species assemblages are often difficult to manage and to set up meaningful monitoring and evaluations programmes. Mountain Fynbos is such an ecosystem and in the Cape of Good Hope (part of the Table Mountain National Park) plant biodiversity over the last five decades has been in decline. The reasons are difficult to speculate since large herbivores, altered fire regimes and even climate change could be contributors to this decline which has been quantified using fixed quadrats and standard cover-abundance estimates based on a Braun-Blanquet methodology. To provide more detailed data that has more resolution in terms of identifying ecological processes, Fixed-Point Repeat Photography has been presented as a management “solution”. However, photography remains a difficult method to standardize subjects and has certain operational limitations.

>Magister Scientiae - MSc / Several attempts have been made to assess the impact of post-fire soil erosion; however, erosion occurs as a result of the complex interplay between many factors, such as climate, land cover, soil and topography, making precise estimation difficult. Additionally, these factors are far from constant in space and time, and often interact with one another. To assess the impact of wildfire on soil erosion and factors influencing its variability, the post-fire soil erosion response of two mountainous headwater sub-catchments namely Langrivier and Tierkloof, with different vegetation cover in the Jonkershoek Valley was examined using a systematic approach that combines efforts in field and laboratory work, spatial analysis and process-based numerical modelling. Geospatial modelling shows high spatial variability in erosion risk, with 56 % to 67 % of surfaces being highly susceptible excluding rock cover. The model highlights the importance of terrain and vegetation indices, with predicted erosion being more severe on steep slopes with lower vegetation cover. / 2021-08-30

Blackwater rivers and lakelets are a common feature of the landscape in the South Western Cape. Contrastingly, white rivers can also be found in the region. Key to the colour of blackwaters is the increased presence of dissolved organic carbon. The vegetation of the regions is known to posses' large amounts of polyphenols and potentially low microbial decomposition. Therefore, are the plant-soil dynamics a possible answer to variation in river colour? To answer this, the chemical correlates of rivers in the region, along with the in vitro leaching of the fynbos vegetation compared to other types and the effects of nutrient fertilisation on microbial activity in soil were determined. The results revealed that organic carbon, Fe and pH are significantly correlated with blackwaters. The Fe in the water appears to be bound to humic compounds. Fynbos vegetation is able to produce greater concentrations of polyphenol leachates (315 mg/l humic acid) compared to savanna species (246 mg/ humic acid) over a four-day period. P fertilisations increased the concentrations of humic acids from 30 mg/1 to 200 mg/l in some soils through their affinity to bind with humic compounds. The N fertilisations moderately increased the humic acid concentrations and in some cases lowered the concentration by 10 mg/l, indicating that it provided a nutrient source to the microbes for carbon breakdown. The interactions between humic compounds, nutrients and Fe are key to the formation of blackwaters in the region. Attached to this is the limited decomposition that takes place due to nutrient limitations. Therefore, the interactions between the carbon leached from the vegetation and below ground activities are determinants of water colour in the South Western Cape.

>Magister Scientiae - MSc / Molecular methods were used to investigate the microbial diversity and community structure of ammonia-oxidizing bacteria (AOB) associated with the roots of the Proteaceae plant family. The identification of ammonia oxidizing bacteria in this ecosystem is of particular interest since Proteaceae are adapted to acidic, low nutrient (e.g. nitrogen) soils. The ammonia monooxygenase operon was used as a molecular marker to identify ammonia-oxidizing bacteria associated with the proteoid roots of the three Proteaceae members and compared to non-plant associated soil. PCR amplification using primer sets targeting the ammonia monooxygenase gene (amoA subunits) were used to construct a clone library. Sequence diversity was determined by RFLP analysis of amoA to identify major groups of AOB of the ~-subclass of Proteobacteria in total community DNA, and DNA sequencing and phylogenetic analysis were also applied. DGGE analysis was performed to determine the community structure and distribution of ammonia-oxidizing bacteria in plant-associated and non-plant associated soils. The AOB genotypic diversity was similar in the plant-associated samples and non-plant associated soil. All AOB phylotypes belonged to Nitrosospira species and clustered with Nitrosospira cluster 3. The abundance of the amoA was quantified to be approximately 4.2 x 107 copies/g of dry soil, using a real-time PCR assay. These data suggest that the Nitrosospira species are the dominant phylotypes in that environment. This investigation provides new insights into the relationships between plants and ammonia-oxidizing bacteria in natural Fynbos ecosystems.

Thesis (MScConsEcol (Conservation Ecology and Entomology))--University of Stellenbosch, 2010. / 134, 43 p. : ill. / ENGLISH ABSTRACT: The Agulhas Plain is a constituent of the Cape Floristic Region, internationally known as a global biodiversity hotspot. The species-rich Agulhas Plain consists mainly of fire-prone fynbos shrublands of which sandstone fynbos covers a significant surface area. This lowland region is characterised by mostly infertile soils yet has unique floristic complexity and contains a high amount of threatened lowland species. Natural vegetation on the Agulhas Plain has been prone to large scale land transformation activities, mainly attributed to the extent of alien plant invasions, urbanisation and agricultural expansion. Fynbos wildflower farming, specifically from natural vegetation, is an important economic activity and contributes to the region‟s agricultural sector. Farmers harvest large quantities of commercial fynbos species and supply these to the market in an attempt to sustain a livelihood. Certain wildflower farming practices (burning, ploughing and broadcast sowing) are applied to natural vegetation in an attempt to increase the abundance of commercial species (i.e. augmentation). Numerous farming practices are used in the industry and the application of these methods can be dynamic and divergent. Furthermore, the implementation of farming practices manifest as anthropogenically induced disturbance events and are a concern for conservation. Previous investigations suggest that farming practices could establish monocultures of commercial wildflower species by reducing species richness and plant diversity of wildflower vegetation. Although the impact of natural disturbance regimes (e.g. fire) and flower harvesting activities have been researched, the impact of farming practices on fynbos structure and composition remains largely unknown. This thesis reports on various aspects related to wildflower farming on the Agulhas Plain. Firstly, by administering a questionnaire, the extent and application of farming practices was investigated. Additionally, the opinion of wildflower farmers (referred to as landholders) about the impact of farming practices on wildflower populations was explored. Secondly, a vegetation survey aimed to assess the impact of farming practices on various structural (regeneration mode and growth form) and compositional attributes (plant family, dominant and rare species) of fynbos. Results from the questionnaire indicate that the application of farming methods are seasonally restricted, often used in varying combinations and relatively small in spatial extent. Furthermore, results show that wildflower farmers have an ecologically acceptable knowledge base and awareness of fynbos management and conservation. Secondly results, obtained from the vegetation survey, imply that natural vegetation subjected to particular farming practices differ from pristine fynbos vegetation by having both altered structural and compositional attributes. However, the impact of farming practices on rare species was less apparent. The conflict between commercial and conservation objectives are apparent from consultation with landholders. Nonetheless, landholders are optimistic about fynbos conservation and conservation can build upon these positive sentiments. Importantly, there is a need to communicate locally with landholders if a sustainable wildflower industry is a priority to stakeholders on the Agulhas Plain. Furthermore, fynbos ecosystems naturally entail complex ecological interactions. Wildflower farming practices reduce the ecological integrity (i.e. altered plant diversity, growth form and plant composition) of wildflower vegetation, at least at the local scale. These farming practices ultimately result both in distorted competitive interactions and disturbance regimes. Therefore, from a conservation perspective, the implementation of these farming practices (ploughing and broadcast sowing) should be cautioned against. / AFRIKAANSE OPSOMMING: Die Agulhas-vlakte vorm deel van die Kaapse Blommeryk; „n gebied wat internasionale bekendheid verwerf het as „n biodiversiteits-brandpunt. Die spesieryke Agulhas-vlakte bestaan hoofsaaklik uit fynbosstruiklande wat geneig is tot veldbrande. Sandsteenfynbos beslaan „n beduidende oppervlak van die gebied (Agulhas-vlakte). Hierdie laagliggende area (Agulhas-vlakte) word meestal deur onvrugbare grondtipes gekenmerk maar beskik nogtans oor unieke fynbos kompleksiteit wat „n aantal bedreigde laagland spesies insluit. Natuurlike plantegroei op die Agulhas-vlakte is onderworpe aan grootskaalse grondgebruik transformasie; hoofsaaklik toe te skryf aan indringer plantegroei, verstedeliking en uitbreiding van landbou. Fynbos veldblomboerdery, spesifiek van natuurlike plantegroei, is „n belangrike ekonomiese aktiwiteit en lewer „n bydrae tot die Agulhas-vlakte se landbou sektor. Boere oes en lewer groot hoeveelhede kommersiële fynbos spesies aan die mark. Sekere veldblom-boerderypraktyke (brand, ploeg en saadstrooi) word ingespan op fynbosveld ten einde die opbrengs en afwisseling van kommersiële spesies te verhoog. „n Verskeidenheid boerderypraktyke word gevolg en die toepassing van hierdie boerderypraktyke is dinamies en uiteenlopend. Voorts manifesteer die implementering van hierdie boerderypraktyke as mensgemaakte versteurings wat kommerwekkend is vanuit „n bewaringsperspektief. Vorige ondersoeke dui moontlik daarop dat boerderypraktyke monokulture van kommersiële veldblomspesies kan vestig deur die veelheid van spesies en diversiteit van veldblomplantegroei te verminder. Ten spyte daarvan dat die impak van natuurlike versteuringsregimes (bv. vuur) en veldblompluk-aktiwiteite reeds nagevors is, bly die impak van veldblomboerderypraktyke op fynbosstruktuur en -samestelling grotendeels onbekend. Hierdie tesis doen verslag oor verskeie aspekte van veldblomboerdery op die Agulhas-vlakte. Eerstens, deur middel van „n vraelys, is die omvang en aanwending van verskillende boerderypraktyke nagevors. Verder is die menings van veldblomboere (na wie verwys word as grondeienaars) ondersoek met die klem op die impak van boerderypraktyke op veldblombevolkings. Tweedens, is „n plantegroei-opname met die doelwit om die impak van landboupraktyke op verskeie strukturele- (regenerasiemodus en groeivorm) en samestellende eienskappe (plantfamilie, dominante- en seldsame spesies) van fynbos vas te stel gedoen. Die resultate van die vraelys dui daarop dat die aanwending van boerderypraktyke seisoenaal beperk word, dikwels in wisselende kombinasies gebruik word en in ruimtelike omvang redelik klein is. Boonop toon die resultate dat veldblomboere oor „n ekologies-aanvaarbare kennisgrondslag en bewustheid van fynbosbestuur en –bewaring beskik. Tweedens, impliseer die resultate, vanuit die plantegroei-opname, dat fynbosveld wat onderwerp word aan sekere boerderypraktyke van natuurlike fynbosplantegroei verskil deurdat dit gewysigde strukturele- sowel as samestellende eienskappe toon. Die impak van die boerderypraktyke op seldsame spesies was egter minder waarneembaar. Die botsing tussen kommersiële- en bewaringsoogmerke blyk duidelik uit konsultasie met grondeienaars. Nietemin is die grondeienaars optimisties oor fynbosbewaring en bewaring kan op hierdie positiewe sentimente staatmaak en voortbou. Dit is belangrik om daarop te let dat dit noodsaaklik is om plaaslik met grondeienaars oorleg te pleeg indien „n volhoubare veldblomindustrie „n prioriteit vir belanghebbendes op die Agulhas-vlakte is. Verder, aangesien fynbos ekosisteme natuurlik komplekse ekologiese wisselwerkings behels, verminder veldblom-boerderypraktyke die ekologiese integriteit (m.a.w. gewysigde plantdiversiteit, groeivorm en plantsamestelling) van fynbosveld, ten minste op kleinskaal (plaaslik). Hierdie landboupraktyke het uiteindelik beide verwronge kompeterende wisselwerkinge asook versteuringsregimes tot gevolg. Vanuit „n bewaringsperspektief moet daar dus teen hierdie boerderypraktyke gewaarsku word.

Thesis (MScAgric (Conservation Ecology and Entomology)--University of Stellenbosch, 2005. / Within the Table Mountain National Park (TMNP), Western Cape, South Africa, various management practices have been undertaken in the removal of alien vegetation. While considerable success in the control of alien plants is evident from the removal of standing plants, it is not known if this effort has actually made any long-term difference in the effort to eliminate alien vegetation from the TMNP. This is because no coordinated effort has been made to assess the extent of the alien seed bank, nor the effect that clearing (including the use of fire) has on this seed store. This study investigates the extent of pre- and post-fire Acacia saligna seed banks under differing stand ages, differing clearing techniques and different habitats in the Cape Peninsula National Park. Firstly, the focus is on two alien plant management techniques: The first technique involves clearing and stacking of biomass for burning during winter (stack burn technique), the second technique involves burning of standing alien plants (standing/block burn technique) to decrease heat release at the surface. Secondly, the extent of Acacia species seed banks along the Silvermine River is also investigated with the aim of determining the extent of alien seed stores in this habitat and therefore the long-term restoration potential of the riparian corridor. The primary question addressed in the first study is: “Under what clearing technique will most of the alien seed bank be reduced?” The secondary question reads: “Is seed bank density and distribution directly related to age of dense infestation of the alien vegetation stand and habitat?” The primary question addressed in the second study is: “What is the vertical, lateral and longitudinal distribution and density of Acacia species seed banks along the Silvermine River?” The secondary question reads: “Is seed density and distribution influenced by above ground density of alien vegetation?” In both riparian and terrestrial systems, alien soil seed banks accumulate in high densities where aboveground alien Acacia vegetation is dense. Most of the seed occurs in the upper soil layer, but seed density decreases with depth with an exception of a high seed density at a low depth in one of the samples in the riparian system. Intense fires are most effective in reducing seed stores and removing aboveground alien vegetation in both riparian and terrestrial fynbos systems. After burns, both stack and stand burns have shown a significant decrease in seed density especially in the upper layers but there is still much seed that remained in the matrix area between stacks. The cooler winter burns resulted in less destructive, lower temperatures that aided higher seedling recruitment. Mature stands of Acacia saligna tend to have greater seed stores than immature stands and habitats with deep colluvial soils have a greater density and also greater vertical distribution of seeds. The vertical distribution of the riparian system differed from the fynbos terrestrial system in that seeds were found down to lower depths. Along the river, seed density also increased laterally with more seeds occurring in the terrrestrial sections than in the channel. Seed density increased with longitudinal distribution with more seeds occurring at the sites in the lower catchment than upper catchment. Managers should be aware that fire is needed to reduce the seed bank in both riparian and terrestrial fynbos systems. The cooler winter stack burns is the best option as it results in less destructive, lower temperatures that aids higher seedling recruitment. It is important to know the site history as age of dense infestation, number of fires and geology of site could influence seed bank density. In riparian systems the vertical distribution of seed is deeper than in the fynbos area. In order for clearing to be effective it is imperative that follow-up takes place and should be done prior to flowering to stop reseeding.

Thesis (MScConsEcol (Conservation Ecology and Entomology))--Stellenbosch University, 2008. / The fynbos eco-region in the Western Cape lowlands has been extensively transformed by anthropogenic activities such as agriculture and urban development, as well as invasive alien plants. Elandsberg Private Nature Reserve and Farms lies on Swartland Alluvium Fynbos and has been largely fragmented by agricultural crop production, whilst Riverlands Nature Reserve together with the Pella Research Site, which lie on Atlantis Sand Fynbos, are under severe threat from the invasive woody alien Port Jackson Willow (Acacia saligna) which forms dense stands in the lands adjacent the nature reserve. Habitat transformation has resulted in subsequent loss of habitat and a reduction in habitat value for small mammal communities by creating a mosaic of optimal and sub-optimal habitats. The success of A. saligna is, in part, attributed to its production of copious amounts of small hard-shelled seeds and well established soil seed banks. In the first part of this study we investigated the effect of habitat transformation on resident small mammal communities by comparing small mammal species richness, diversity and abundance between natural and transformed habitats as well as between the two vegetation types. We also investigated the population demographics of the striped mouse (Rhabdomys pumilio) in the different habitats. Our study shows that whilst fragments of natural habitats, especially at Riverlands and Pella, may be playing an important role in harbouring rare and possibly endangered species, transformed habitats are also important as secondary habitats providing both cover as well as seasonal food resources. Reproduction and body condition in R. pumilio were dependent on seasonal changes such as availability of water and food resources in the habitats. The second part of this study was carried out to investigate the effect of alien plant invasion on the resident small mammal communities at Riverlands Nature Reserve and to determine the role of small mammals in the removal and predation of A. saligna seeds. Rodent species richness, diversity and abundance were very low in the A. saligna stands compared to the adjacent fynbos vegetation. The interaction of rodents with seeds (removal or predation) was dependent upon seed size and seed abundance in the habitats. Whilst rodents may play an important role in predator limitation in the acacias, it is also possible that they may be playing a significant role in dispersing the seeds of acacias into the fynbos. More work is required to fully understand the role small mammals play in seed predation, dispersal and limitation in alien invaded fynbos systems.