Orientador: Gonçalo Amarante Guimarães Pereira / Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-26T17:23:36Z (GMT). No. of bitstreams: 1 Almeida_LudimilaDias_M.pdf: 4371531 bytes, checksum: 15deaceac3a09118222822415b70daaf (MD5) Previous issue date: 2015 / Resumo: O ciclo sexual de basidiomicetos é controlado pelo sistema mating type. Este é formado por dois loci multigênicos não ligados A e B, o locus A codifica duas proteínas homeodomínio HD1 e HD2, capazes de heterodimerização, enquanto o locus B apresenta genes para receptores de feromônio e feromônios. Em fungos heterotálicos, o desenvolvimento sexual depende da especificidade entre os quatro alelos, sistema este chamado tetrapolar, e é ativado apenas por interações específicas entre alelos parentais necessariamente diferentes, assegurando que hifas geneticamente iguais sejam incompatíveis. Em contrapartida, a condição na qual hifas geneticamente iguais são compatíveis é denominada homotalismo. Fungos basidiomicetos são tipicamente heterotálicos, no entanto, apesar de pertencer a este filo, o fitopatógeno Moniliophthora perniciosa, causador da doença Vassoura de Bruxa no cacaueiro, é classificado como homotálico primário. Curiosamente, apesar desta classificação, M. perniciosa contém um sistema genético tetrapolar, sendo o primeiro fungo descrito com essa característica. Neste trabalho, foi realizada a caracterização dos loci mating type em M. perniciosa e verificamos o perfil transcricional destes genes com o objetivo de entender os mecanismos moleculares que atuam no seu comportamento homotálico. Primeiramente, foram identificados no genoma um locus A e um locus B, além de genes atuantes no processamento e sinalização em resposta aos feromônios. O estudo do perfil transcricional destes genes revelou que um receptor tem um perfil de expressão condizente com a fase do ciclo de vida do fungo na qual ocorre o processo de dicariotização. A análise funcional dos receptores foi realizada em um sistema expressão heteróloga, promissor para o estudo de GPCRs (G coupled proteins receptors), porém não permitiu confirmar a presença de alelos compatíveis de receptores e precursores de feromônios no genoma de M. perniciosa como uma possível explicação ao comportamento homotálico. Tendo em vista o locus A, este é formado por um par MpHD1 e MpHD2, o que difere de outros basidiomicetos devido a inserção de uma sequência (11,958kb) interrompendo seus promotores. A hipótese neste cenário é que o transposon encontrado no locus A poderia ter permitido um crossover desigual que trariam genes compatíveis para o mesmo alelo, sendo responsável pelo homotalismo na espécie. Contrariando essa hipótese, os dados obtidos neste projeto indicam que uma possível transição prévia ao homotalismo resultou em uma pressão seletiva relaxada sobre os loci mating type, cuja consequência foi a degeneração nos genes destes loci. Neste contexto, os genes do mating type poderiam não estar mais envolvidos na dicariotização. Este trabalho, portanto, fornece importantes dados para o entendimento da biologia sexual deste fungo, o que futuramente poderá ser correlacionado a sua fitopatogenicidade / Abstract: The basidiomycetes¿ sexual cycle is controlled by the mating type system. The structure of this system comprises two unlinked multigenic loci, A and B. The A locus codes for homeodomain proteins, HD1 e HD2 which form a heterodimer, and B locus presents pheromone receptors and pheromones. In outcrossing (heterothallic) fungi, sexual development depends on the compatibility of four genes in two different allelic versions in a so-called tetrapolar system, and is strictly activated by specific interactions between different parental alleles, ensuring that genetically identical hyphae are incompatible. The phytopathogen Moniliophthora perniciosa causes Witches¿ broom disease in cacao plants, and it is a typical basidiomycete fungi. However, it completes its sexual development through the crossing of genetically identical hyphae, and is the first described homothallic fungi with a complete tetrapolar genetic system. Here we show the characterization of the mating type loci of M. perniciosa and the transcriptional profile of these genes, to uncover the mechanisms underpinning its homothallic behavior. First, we identified an A locus, a B locus and a set of genes that participates in pheromone processing and signalization. Considering the transcriptional profile of these genes, one receptor shows an expression profile consistent with an involvement in dikaryotization. The functional evaluation of the receptors was performed in a heterologous expression system, a promising tool for GPCR (G coupled proteins receptors) proteins study. This system did not allow the confirmation if M. perniciosa contains compatible alleles for receptors and pheromones, one possible explanation for homothallism. Considering A locus, it codes for a pair MpHD1 and MpHD2, which has a sequence insertion (11,958kb) interrupting their promoters, differing from others basidiomycetes. The hypothesis in this scenario is that the insertion of a transposon could have allowed an unequal crossover that brought together compatible genes in the same allele, causing the homothallism in this species. Interestingly, in an opposite direction, our data indicates that a previous transition for homothallism could have resulted in a relaxed selective pressure on mating type loci, with consequences such as the presence of degenerated genes on these loci. In this context, the mating type genes could not necessarily play a role in dikaryotization process. This work provides valuable data for understanding the sexual biology of M. perniciosa, which hereafter could be correlated with its phytopathogenicity / Mestrado / Genetica de Microorganismos / Mestra em Genética e Biologia Molecular

A hierarchy of different chromosome conformations plays a role in many biological systems. These conformations contribute to the regulation of gene expression, cellular development, chromosome transmission, and defects can lead to human disease. The highest functional level of this hierarchy is the partitioning of the genome into compartments of active and inactive chromatin domains (1’s -10’s Mb). These compartments are further partitioned into Topologically Associating Domains (TADs) that spatially cluster co-regulated genes (100’s kb – 1’s Mb). The final level that has been observed is long range loops formed between regulatory elements and promoters (10’s kb – 100’s Mb). At all of these levels, mechanisms that establish these conformations remain poorly understood. To gain new insights into processes that determine chromosome folding I used the mating type switching system in budding yeast to study the chromosome conformation at length scales analogous to looping interaction. I specifically examined the role in chromosome conformation in the mating type switching system. Budding yeast cells can have two sexes: MATa and MATα. The mating types are determined by allele-specific expression of the MAT locus on chromosome III. The MATa allele encodes for transcription factors responsible for the MATa mating type and the MATα allele encodes transcription factors responsible for the MATα mating type. Yeast cells can switch their mating type by a process that repairs a break at MAT using one of two silent loci, HML or HMR, as a donor to convert the allele at the MAT locus. When MATa cells switch they prefer to use HML, which contains the MATα allele, located at the end of the left arm. MATα cells prefer to use HMR, which contains the MATa allele, located on the end of the right arm of chromosome III. The sequences of the HM loci are not important for donor preference. Instead the cell chooses the donor on the left arm in MATa cells and chooses the donor on the right arm in MATα cells. This lack of sequence specificity has led to the hypothesis that the conformation of the chromosome may play a role in donor preference. I found that the conformation of chromosome III is, indeed, different between the two mating types. In MATa cells the chromosomes displays a more crumpled conformation in which the left arm of the chromosome interacts with a large region of the right arm which includes the centromere and the MAT locus. In MATα cells, on the other hand, the left arm of the chromosomes displays a more extend conformation. I found that the Recombination Enhancer (RE), which enhances recombination along the left arm of the chromosome in MATa cells, is responsible for these mating type-specific conformations. Deleting the RE affects the conformation of the chromosomes in both MATa and MATα cells. The left portion of the RE, which is essential for donor preference during the switching reaction in MATa cells, does not contribute to the conformation in MATa. This region does have a minor effect on the conformation in MATα cells. However, I found that the right portion of the RE is responsible for the conformation of chromosome III in both mating types prior to initiation of switching. This work demonstrates that chromosome conformation is determined by specific cis regulatory elements that drive cell-type specific chromosome conformation.