L’altération constitutionnelle des gènes BRCA1 et BRCA2 est détectée dans 20 à 30% des formes familiales de cancer du sein. La fréquence de mise en évidence d’une mutation BRCA2 selon des critères généalogiques reste modeste. La définition de caractéristiques tumorales communes aux tumeurs du sein survenant dans un contexte de prédisposition lié à BRCA2 a pour objectif l’identification de caractéristiques propres aux tumeurs BRCA2 permettant de mieux définir les indications de recherche de mutation de ce gène, et l’identification de facteurs impliqués dans la tumorigénèse des cancers du sein liés à BRCA2. L’étude des profils génomiques des tumeurs BRCA2 a caractérisé la délétion récurrente des bras longs des chromosomes 13 et 14. L’analyse supervisée des données d’expression entre les tumeurs BRCA2 et les tumeurs familiales BRCAX a identifié une signature spécifique des tumeurs BRCA2. Les exomes des chromosomes 13 & 14 pour 5 tumeurs informatives et leur ADN constitutionnel ont été séquencés afin d’identifier la ou les cibles des régions délétées. Cette analyse a permis la caractérisation de variants somatiques qui seront à étudier dans une large série de cas BRCA2 et contrôles pour conclure sur leur rôle dans la tumorigénèse liée à BRCA2.La caractérisation de pertes de matériel chromosomique spécifiques aux tumeurs BRCA2, rapportée dans plusieurs études, offre une perspective diagnostique avec le développement d’un test FISH utilisable en pratique clinique pour préciser les indications d’une recherche de mutation du gène BRCA2, mais suggère également la présence de gènes cibles candidats dont l’inactivation est requise lors de la cancérisation mammaire liée à BRCA2. / Germline BRCA1 and BRCA2 mutations account for 20-30% of familial breast cancer. The main indication for BRCA2 screening is a family history, but the mutation detection rate in patients selected this way is low. The identification of characteristics common to BRCA2-associated tumors would improve the criteria used to select patients for BRCA2 screening and could identify factors implicated in BRCA2-mutant breast cancer tumorigenesis. The analysis of BRCA2-mutant breast tumor genomic profiles identified deletions of chromosomes 13q and 14q as a common feature of BRCA2-tumors. Supervised gene expression analysis of BRCA2-mutant breast tumors and familial breast tumors without germline BRCA1 or BRCA2 mutations identified a specific BRCA2 gene signature. Exome sequencing of chromosomes 13q and 14q for 5 BRCA2-mutant tumors, and their associated germline DNA was performed in order to identify the target(s) of the specific genomic deletions in the BRCA2 tumors. This analysis characterized somatic variants that will be screened for in a larger cohort of BRCA2 and control tumors cases to explore their role in BRCA2-mutant breast cancer. Our study identified deletions of chromosomes 13q and 14q as a common feature of tumors with germline BRCA2 mutations, as has been observed in several previous studies. We suggest that FISH analysis for the deletion of these chromosomes would be a rapid and technically feasible first step to select tumors worth screening for germline BRCA2 mutations and we hypothesize that the inactivation of candidate genes located in these deleted regions allows the cell to resume division and progress thus contributing to tumorigenesis in BRCA2-mutant tumors.

Esse trabalho objetivou avaliar o perfil genômico de pacientes HIV+ submetidos à imunoterapia com células dendríticas (DC). Os resultados obtidos mostraram que as DC utilizadas na imunoterapia podem ser diferentes em termos de perfil de expressão gênica entre os pacientes selecionados para o ensaio clínico e essas diferenças podem afetar a qualidade do produto administrado ao paciente. Nossos dados não correlacionaram diferenças na ativação das DC com esse perfil de expressão gênica distinto, possivelmente pelo número limitado de amostras disponíveis ou pela escassez de marcadores de ativação adequados. O único paciente que respondeu à imunoterapia mostrou, em leucócitos circulantes, um perfil de expressão específico e relacionado com um melhor controle da carga viral plasmática e com uma resposta imune de tipo Th1 quando comparado com os indivíduos que não responderam ao tratamento. A genotipagem revelou que esse paciente também carrega polimorfismos relacionados a menor progressão à AIDS o que também pode estar relacionado com a boa resposta à imunoterapia. / Aim of this project was the evaluation of genomic profile of HIV+ patients submitted to dendritic cell (DC)-based immunotherapy. Results showed that expression profile of DC used in immunotherapy could be different among patients selected for immunotherapy, and that those differences could affect the quality of final vaccine product, even if our data did not evidence significant difference in DC activation state with regard to expression profile, maybe due to limited size of available samples or to the lack of appropriate DC activation markers. The expression profile of peripheral blood leukocytes from the only good responder of immunotherapy trial was associated with better control of plasma viral load and a Th1 immune response compared to weak or transient responders. Genotyping analysis revealed that the good responder carries polymorphisms associated with a less progression toward AIDS, suggesting that also the genetic background could affect the response to immunotherapy.

Esse trabalho objetivou avaliar o perfil genômico de pacientes HIV+ submetidos à imunoterapia com células dendríticas (DC). Os resultados obtidos mostraram que as DC utilizadas na imunoterapia podem ser diferentes em termos de perfil de expressão gênica entre os pacientes selecionados para o ensaio clínico e essas diferenças podem afetar a qualidade do produto administrado ao paciente. Nossos dados não correlacionaram diferenças na ativação das DC com esse perfil de expressão gênica distinto, possivelmente pelo número limitado de amostras disponíveis ou pela escassez de marcadores de ativação adequados. O único paciente que respondeu à imunoterapia mostrou, em leucócitos circulantes, um perfil de expressão específico e relacionado com um melhor controle da carga viral plasmática e com uma resposta imune de tipo Th1 quando comparado com os indivíduos que não responderam ao tratamento. A genotipagem revelou que esse paciente também carrega polimorfismos relacionados a menor progressão à AIDS o que também pode estar relacionado com a boa resposta à imunoterapia. / Aim of this project was the evaluation of genomic profile of HIV+ patients submitted to dendritic cell (DC)-based immunotherapy. Results showed that expression profile of DC used in immunotherapy could be different among patients selected for immunotherapy, and that those differences could affect the quality of final vaccine product, even if our data did not evidence significant difference in DC activation state with regard to expression profile, maybe due to limited size of available samples or to the lack of appropriate DC activation markers. The expression profile of peripheral blood leukocytes from the only good responder of immunotherapy trial was associated with better control of plasma viral load and a Th1 immune response compared to weak or transient responders. Genotyping analysis revealed that the good responder carries polymorphisms associated with a less progression toward AIDS, suggesting that also the genetic background could affect the response to immunotherapy.