Almost 50 % of drinking water in Sweden comes from aquifers. The sustainability of groundwater resources in Stockholm County is threatened by increased salinity although most of the drinking water comes from Lake Mälaren. For a region known to be located within the areas covered by seawater after the last glaciation, the health and socio-economic development of the county is in a balance as development plans are challenged by high risk of salt groundwater. It is therefore important to know the extent and spread of salinity within the areas and the factors that correlate well with the salinity in the first attempt to study the risk of the areas to high salt content of groundwater. This paper looks at the distribution of salinity within the county and analyses the correlation between salinity and several natural factors. Using well co-ordinates and chemical data (compiled by Stockholm County Administration), and digital topographical, geological and land use data (from SGU and Swedish Land Survey), it is possible to project and visualize wells and salinity over the area, spatially develop and extract natural factor values to respective wells based on their co-ordinates, and finally perform statistical analyses on a resultant well attributes table, with the aid of Surfer, ArcGIS and Statistica Software. Results showing the spatial distribution of wells’ salinity and graphs of variance between the salinity of wells and respective natural factors of topography, depth, predominant soil cover, land use and distance from the sea, are further discussed.