This project was aimed at investigating behaviour and condition of the Yellow-breasted Boubou, Laniarius atroflavus, in response to habitat differences across core, edge and riparian Afro-montane forest habitats at the Ngel Nyaki Forest Reserve, Nigeria. This species is little known and conservation effort will require direction in identifying the habitat of best quality for their survival. The determination of habitat association using correspondence analysis of census data suggested strongest association with the riparian habitat, even though this habitat held the least overall avian biodiversity as determined from a modified Shannon index. L. atroflavus appeared not to hold territories in the core habitat. Territoriality, vocalisation and time budget showed trends indicating L. atroflavus were more abundant and fared better in the riparian habitat. In this habitat, there was a greater density of territories and a smaller mean territory size, better call quality in frequency bandwidth and duration, and increased displaying and foraging time in the riparian habitat. Difference in size, colour and growth-based measures of condition showed difference between sexes, but did not show a strong habitat effect – males were larger than females, yet females appeared to have better quality of yellow breast feathers for equal carotenoid concentration. The effect of nest predation risk as a predictor of habitat quality revealed nests in the riparian habitat had the greatest daily survival probability, and within this habitat nests established at lower heights survived longest. While the evidence pointed towards the riparian habitat being most suitable for L. atroflavus, this habitat sadly continues to suffer anthropogenic disturbance and this species’ IUCN listing as Least Concern was suspected be an over-estimation.

Doctor of Philosophy / Department of Biology / Philip S. Gipson / Northern bobwhite (Colinus virginianus) populations in much of the species range have been declining for the last 35 years. I trapped and equipped bobwhite with radio transmitters and tracked them during 2003-2005. I used these data to examine the effects of landscape configuration on survival as well as the habitat association of bobwhite in southeastern Kansas. I used the nest survival model in Program MARK to determine the effects of habitat configuration on weekly survival of radio equipped bobwhite during the Fall-Spring (1 October to 14 April) and the Spring-Fall (15 April to 30 September) at home range and 500 m buffer scales. Individual survival probability for the Fall-Spring period was 0.9439 (S.E. = 0.0071), and the most parsimonious model for the Fall-Spring period at the home range scale was B0 + percent woodland + percent cropland. At the 500 m buffer scale the most parsimonious model was B0 + percent Conservation Reserve (CRP) program land. The weekly survival probability for the Spring-Fall period was 0.9559 (S.E. = 0.0098). At the home range and 500 m buffer scales there were weak associations of habitat to survival during Spring-Fall with the most parsimonious model for both scales B0 + percent other. Using Euclidean Distances to measure distance from animal location to each habitat, I found that habitat selection was occurring during the Spring-Fall (Wilkes λ = 0.04, F 6,36 = 143.682, P < 0.001) and Fall-Spring (Wilkes λ = 0.056, F 6, 29 = 81.99, P < 0.001). During Spring-Fall bobwhite were associated with locations near cool-season grasses and during Fall-Spring preferred locations near woody cover. Bobwhite also showed habitat selection at a second more refined land use classification level for Spring-Fall (Wilkes λ = 0.006, F 16, 26 = 284.483, P < 0.001) and Fall-Spring (Wilkes λ = 0.004, F 16, 19 = 276.037, P < 0.001). During the Spring-Fall, bobwhites were associated with locations near cool-season grass pastures and roads and during Fall-Spring were associated with locations in close proximity to roads and CRP. Understanding the effects of habitat configuration on bobwhite is an important step in developing a broad-scale management plan.

Managing Monarch butterfly overwintering groves: making room among the eucalyptus Proper management and conservation of the coastal California overwintering sites used by western Monarch butterflies (Danaus plexippus L.) is critical for continued use of these sites by monarchs. Many management efforts are currently concentrating on eucalyptus-only sites because of the prevailing notion that monarchs prefer eucalyptus over native tree species. Yet, whether a preference exists or not has never been tested. Herein, we test the “eucalyptus preference” hypothesis with data from five overwintering sites comprised of blue gum eucalyptus (Eucalyptus globulus) and at least one other native tree species from fall 2009 to spring 2012. We found that when monarchs clustered disproportionately on a tree species relative to its availability, they clustered significantly more than expected on native trees and significantly less than expected on eucalyptus. Also, in years when the overwintering population was highest, monarchs clustered disproportionately on native conifers, and they often switched from clustering on eucalyptus in the early winter to native conifers in the middle or late winter. Our results suggest that overwintering groves should be managed to include a mixture of tree species. We cannot recommend simply planting more eucalyptus. At overwintering sites in central coastal California, native conifers such as Monterey cypress (Hesperocyparis macrocarpa) and pitch canker-resistant Monterey pine (Pinus radiata) should be planted as replacements for blue gum eucalyptus in areas where trees are likely to fall, and around the perimeter of groves. Testing the Monarch butterfly eucalyptus preference hypothesis at California overwintering sites Western Monarch butterflies (Danaus plexippus L.) overwinter in groves of native and non-native trees along the California coast. Eucalyptus is abundant in coastal counties, and overwintering monarchs utilize this type of tree more than any other. This has led to the belief that monarchs prefer eucalyptus. Yet whether a preference exists has never been tested. We tested the “eucalyptus preference” hypothesis at five California overwintering sites with canopies comprised of eucalyptus and at least one native conifer species. We found that at no time over the course of three years did monarchs cluster on trees in proportion to their availability in the canopy. Overall, they did not cluster on one tree species significantly more frequently than another, indicating that monarchs do not prefer eucalyptus—or any tree species—all of the time. However, more often than not monarchs clustered significantly more than expected on native trees, particularly at midseason when the weather was most inclement. They also clustered disproportionately on native conifers when the overwintering population size was highest. At most sites monarchs exhibited tree switching, shifting from eucalyptus to native conifers in the middle or late winter. Based on these results, we reject the “eucalyptus preference” hypothesis. In its place, we propose the “conditional preference hypothesis”, wherein monarchs are predicted to prefer cluster trees according to microclimate conditions and prefer alternate trees within a site as climatic conditions change. Rejection of the eucalyptus preference hypothesis suggests that sites comprised exclusively of eucalyptus may not offer monarchs a suitable range of microhabitats, and further suggests we should rethink “eucalyptus-centric” management. Monarch butterflies overwintering in coastal California: low site fidelity and high intersite movement Western monarch butterflies (Danaus plexippus L.) overwinter in large aggregations at hundreds of sites along the California coast. Management plans and census methods are both founded on the assumption that individual monarchs arrive at an overwintering site in the fall and stay at that site for the winter. Though populations potentially coalesce en masse from autumnal sites onto climax overwintering sites, very little individual movement between sites is inferred. Monarch movement is therefore thought to be primarily into sites (as opposed to out of or among them). We refer to this assumption and inference as the accrual hypothesis. In light of previous studies that provide evidence for movement among sites, we propose that overwintering monarchs may belong to a superpopulation. The existence of a superpopulation comprised of individuals moving in and out of sites would force us to rethink our ideas of landscape-level resource use by monarchs, our site-centric (rather than landscape-level) management strategies, and our abundance estimation techniques, which employ closed population models. We tested the closed population model, the accrual hypothesis, and the superpopulation model at three California overwintering sites using a mark-resight study design. We found that a large proportion of the monarchs at a site moved among (into and out of) monitored sites, both while the population size increased in October and November, and while the population appeared to exhibit an equilibrium winter maximum. The pattern of abundance of both tagged and untagged monarchs at monitored sites leads us to reject the closed population model and the accrual hypothesis. We found that monarchs at all three study sites are part of a larger superpopulation, though the sites do not contribute to the superpopulation equally. We determined that mark-resight is a viable alternative to existing population estimation techniques, though mark-resight methods would need to be explored further before being applied routinely. Our results suggest we need to move away from site-based management and manage instead for landscape-level overwintering (superpopulation) dynamics.

No description available.

Thesis (MSc (Conservation Ecology and Entomology))--Stellenbosch University, 2009. / ENGLISH ABSTRACT: In 2005, six white rhinoceros (Ceratotherium simum) were reintroduced into Pafuri, in the far northern section of Kruger National Park (KNP), South Africa, as part of a large mammal reintroduction project. All six individuals were fitted with horn radio transmitters. Rhinos have been absent from Pafuri for over a century, and this project aimed to establish a breeding nucleus in the area. The aim of this study was to monitor post-release movement and habitat use of these animals within the 203 km2 study area and assess the short term success of the re-introduction project as well as the suitability of the five landscape types in Pafuri as a habitat for white rhinoceros. Habitat suitability and selection was assessed at two ecological hierarchical scales: 1) landscape system, analysed further down to the spatial scale of range and territory establishment, and 2) feeding station for diet selection. Rhinos were tracked for 12 months and a database of 719 sighting records was compiled. These data were used to determine the utilisation of and preference between the Pafuri landscape types, using preference indices that compare utilisation versus availability. An a-LoCoH nonparametric kernel method was used to calculate home ranges and utilisation distributions of each rhino. Feeding surveys were attempted by backtracking along fresh rhino feeding paths and recording the grass species present and eaten in 0.7 m x 0.7 m quadrats. Faecal samples were collected and analysed using microhistological techniques and dietary composition was assessed for each rhino. Landscape preference analyses showed that the rhinos favoured Colophospermum mopane Shrubveld on calcrete in the dry season, and the Punda Maria Sandveld in the wet season. The territory establishment of the dominant bull was substantially larger (44.8 km²) than those of adult male rhinos in the rest of KNP. Ranging areas of the mature females (17 – 25.4 km²), were consistent with sizes of previous studies. The two sub-adults ranged far more extensively, establishing an 84.1 km² annual range during the study period. The annual diet consisted of mostly perennial grass species, with moderate grazing value species dominating for most of the year. Dietary analyses showed that Schmidtia pappophoroides, Eragrostis superba, Enneapogon cenchroides, Cenchrus ciliaris and Stipagrostis uniplumis were the primary grass species consumed. vii This study demonstrated that the Pafuri rhinos are behaving similarly to rhinos established in other areas, with movements around the landscapes being primarily influenced by rainfall and permanent water sources, and the high quality grazing that is more abundant in the wet season. Their range and territory sizes were inevitably large, for a low density area, but not uncommonly so. The most significant outcome of this study was the preference shown for the Colophospermum mopane Shrubveld on calcrete landscape that is classed as unique within South Africa, and was also ranked as ‘avoided’ by the earlier KNP studies into landscape preferences of rhinos. The grass cover in Pafuri, although sparse and very dry, contained a diversity of low to high grazing value grasses that the rhinos appeared to exploit to the best of their ability. The abundance of moderate grazing value species in their diets, and the low number of low grazing value species suggests that they are maximising the opportunities to graze on nutritious grasses when they are available. Our findings suggest that the Pafuri area is suitable for the establishment of a small breeding nucleus of white rhinos. The abundance of permanent water, in the form of springs, is a great advantage however, the potential for bush encroachment into grasslands in areas of such low rainfall needs to be considered if the population continues to grow at the current rate. The birth of two new calves in 2008 confirms that these rhinos have settled and adapted to their new habitat, and is a very promising sign for the future of this increasing subpopulation. / AFRIKAANSE OPSOMMING: In 2005 is ses wit renosters (Ceratotherium simum) hervestig in Pafuri in die noordelike gedeelte van die Kruger Nasionale Park (KNP), Suid-Afrika, as deel van ‘n groot soogdier hervestigings projek. Al ses individue is gemerk met horing radioseintoestelle. Renosters kom vir al meer as ‘n honderd jaar nie meer in Pafuri voor nie en hierdie projek was daarop gemik om ‘n teel-nukleus in hierdie gesied te vestig. Die doel van hierdie studie was om die verspreiding van die renosters na loslating en habitat-gebruik binne die 203 km2 studie-omgewing te monitor, om die korttermyn sukses van die hervestigings program te evalueer en ook te kyk na die gepastheid van die vyf landskap-tipes in Pafuri as ‘n geskikte habitat vir die wit renosters. Habitatgepastheid en seleksie is geëvalueer volgens twee ekologiese hiërargiese skale: 1) landskapsisteem, wat in meer resolusie tot die ruimtelike skaal van reikwydte en omgewingsvestiging geanaliseer is, en 2) voedings-stasie vir dieet-seleksie. Renosters is vir 12 maande gevolg en ‘n databasis wat 719 waarneming-rekords bevat, is opgestel. Laasgenoemde data is gebruik om die gebruik en voorkeur vir die Pafuri landskap tipes te bepaal met behulp van voorkeur-indikators wat die gebruik met beskikbaarheid vergelyk het. ‘n a-LoCoH nie-parametriese kern metode is gebruik om die reikwydte en gebruiksverspreidings van elke renoster te bereken. Voedingsopnames is gedoen deurdat vars renoster voedings-paadjies terugwaarts gevolg is en die grasspesies teenwoordig en waarop gevoed is, in 0.7 m x 0.7 m kwadrante te bepaal. Mismonsters is versamel en geanaliseer deur gebruik te maak van mikro-histologiese tegnieke en voedingswaarde-samestellings is vasgestel vir elke renoster . Landskapsvoorkeur analises dui daarop dat die renosters in die droë seisoen Colophospermum mopane struikveld wat op kalkreet groei verkies en die Punda Maria Sandveld in die reën seisoen. Die terrein vestiging van die dominanate bul was aansienlik groter (44.8 km²) in vergelyking met die volwasse bul renosters in die res van die KNP. Reikwydte van die volwasse koeie (17 – 25.4 km²) was ooreenstemmend met dié van vorige studies. Die reikwydte van die twee subvolwassenes het baie meer gevarieer, deurdat ‘n 84.1 km² jaarlikse reikwydte gedek was binne die studie periode. Die jaarlikse dieet het meestal bestaan uit meerjarige ix grasspesies, met spesies met matige weidingswaarde wat oorheers vir meeste van die jaar. Voedingswaarde analises dui daarop dat Schmidtia pappophoroides, Eragrostis superba, Enneapogon cenchroides, Cenchrus ciliaris en Stipagrostis uniplumis die primêre gras spesies was waarop gewei word. Die studie het bewys dat die Pafuri renosters soortgelyke gedragspatrone vertoon het as renosters in ander gevestigde gebiede, deurdat bewegings binne die landskap hoofsaaklik beïnvloed word deur reënval en permanente waterbronne, asook die hoë gehalte weidingsbronne beskikbaar gedurende die reën seisoen. Hulle reikwydte- en terrein-groottes was uiteraardelik groot vir ‘n lae-digtheid areas, maar dit is nie buitengewoon nie. Die mees betekenisvolle gevolgtrekking van die studie was die voorkeur vir die Colophospermum mopane struikveld op kalkreet landskappe wat beskou word as uniek aan Suid-Afrika, en wat ook beskou was as ‘vermy’ deur vroër KNP studies tov. landskap voorkeure spesifiek vir renosters. Die grasbedekking in Pafuri, alhoewel yl en baie droog, het tog oor ‘n verskeidenheid grasse beskik wat van lae tot hoë weidings waarde het, en wat die renosters tot die beste van hulle vermoë benut het. Die oorvloedige teenwoordigheid van beide spesies met matige weidingswaarde in hulle dieët en die lae hoeveelheid van spesies met lae weidingswaarde, impliseer dat hulle die geleentheid om op voedingsryke grasse te voed ten volle benut wanneer dit beskikbaar is. Ons resultate dui daarop dat die Pafuri omgewing geskik is vir die vestiging van ‘n klein teel-nukleus van wit renosters. Die oorvloedige teenwoordigheid van permanente waterbronne in die vorm van fonteine is ‘n groot voordeel, maar die kans vir bosindringing in hierdie grasveld-gebiede met lae reënval moet oorweeg word sou die populasie aanhou toeneem teen die huidige tempo. Die geboorte van twee nuwe kalfies in 2008 staaf die moontlikheid dat die renosters gevestig en aangepas het in hulle nuwe habitat, wat ‘n baie belowende teken is vir die toekoms van die groeiende subpopulasie.

Breeding compexes of poeciliid fishes with a bisexual and two unisexual species were studied for mechanisms permitting Sympatric coexistence. The unisexuals are gynogenetic and thereby sexually dependent on the males of the bisexual species for sperm to initiate development, but inheritance is entirely maternal. Bisexual females are more abundant in headwater localities; unisexuals increase in downstream localities. Males were 10 - 18% of the total poeciliid population, regardless of the relative proportions of bisexual to unisexual females. Downstream localities were typified by greater habitat diversity, including a variety of backwater pools. The unisexuals showed a marked preference for such pools. Both field and laboratory studies showed that all three types of females as well as males preferred shaded areas with a gravel substrate. Although the four types of fish were found together, nearest neighbour data indicated that each type of female preferred its own kind. Males courted throughout the year and were indiscriminate in their choice of mates. Despite the skewed sex ratio, males were not in short supply because only a few females were sexually receptive at a given time. No significant differences existed between bisexuals and unisexuals in their relative reproductive outputs, but they were asynchronous.

Egg stocking in rivers and streams is a common measure to support and re-introduce salmonid populations. To ensure the success of egg stocking programs, knowledge of the early life stages of juveniles including dispersal ability and habitat preferences of fry is a prerequisite. This study was conducted to investigate downstream dispersal patterns and habitat use of young of the year brown trout in a mid-sized, channelized, boreal river in Sweden. Eyed trout eggs were stocked in February of 2021. During August of the same year, 2-3 months after emergence, trout were sampled by electrofishing within 1 km downstream of the stocking sites and each individual point of capture was recorded by GPS. In addition, data on riverbank slope, shoreline irregularity, stream bed substrate, water velocity and water depth were collected for each of the sampling sections. The results showed that trout fry were distributed throughout the 1 km long sampled sections and that the density of fry did not increase towards the stocking points. The observed variation in the distribution of trout fry was best explained by the riverbank slope. Approximately twice as high fry densities were found in reaches with gentle compared to medium and steep bank slopes. The differences are suggested to be an effect of 1) stream marginal water velocity differences during high flows affecting fry occupancy, and 2) that gentle slopes were often accompanied by shallow water, preferred by fry. These findings may provide helpful knowledge for fisheries managers to optimize the outcome of egg stocking and river restoration activities regarding fry recruitment. / Romutsättning i vattendrag är en vanlig åtgärd för att stärka och återetablera populationer av laxartade fiskar. För att lyckas med romutsättningar krävs kunskap om ynglens spridningsförmåga och habitatpreferenser. Denna studie genomfördes för att undersöka spridningsmönster och habitatval av ensomrig öring i en medelstor kanaliserad älv i Sverige. Ögonpunktad rom sattes ut i februari 2021. Under augusti samma år, 2-3 månader efter att ynglen lämnat lekgruset elfiskades 1 km långa sträckor direkt nedströms utsättningsplatserna. De fångade individernas position registrerades med GPS. Data över strandkantens lutning, strandzonens flikighet, bottensubstrat, vattenhastighet och djup samlades in för varje elfiskesträcka. Resultatet visade att öringyngel spridit sig över hela de 1 km långa elfiskesträckorna, och att tätheterna av yngel inte ökade med minskat avstånd till utsättningspunkterna. Den observerade variationen i fördelningen av öringyngel förklarades bäst av strandkantens lutning. Ungefär dubbelt så hög täthet av yngel förekom i sträckor med flack jämfört med medel och brant lutning. Skillnaderna föreslås vara en effekt av 1) skillnader i vattenhastighet under höga vattenflöden som påverkar ynglens möjligheter till att bibehålla sin position i habitatet, och 2) att flack lutning av strandkanten ofta åtföljdes av grunt vatten vilket föredras av yngel. Dessa upptäckter kan bidra med värdefull kunskap för att optimera romutsättningar och restaureringar i avseende på rekrytering av årsyngel.

Estuarine habitats are considered nursery habitats for fishes and invertebrates, but oligohaline environments are critically understudied. Using a seine net and fyke nets, we sampled Back Bay, Mississippi (USA), a low salinity estuary, once a month for a year to explore the temporal use of the marsh and adjacent submerged landscape by nekton species. We also looked at whether there is evidence of habitat preference in the most numerous nekton species. We used a novel habitat usage index (HUI) to compare seine and fyke net catches of our top 10 species, and evaluated catch size in relation to maturation size. Consequently, we noted marked differences in 48 nekton species in terms of habitat preference; observed, for our top 10 species, transient species were primarily immatures, and resident species mostly occurred in marshes with some exceptions; and detected size patterns consistent with the spawning cycle of the species in question.

Information on habitat preferences is critical for the successful conservation of endangered species. For many species, especially those living in remote areas, we currently lack this information. Time and financial resources to analyze habitat use are limited. We aimed to develop a method to describe habitat preferences based on a combination of bird surveys with remotely sensed fine-scale land cover maps. We created a blended multiband remote sensing product from SPOT 6 and Landsat 8 data with a high spatial resolution. We surveyed populations of three bird species (Yellow-breasted Bunting Emberiza aureola, Ochre-rumped Bunting Emberiza yessoensis, and Black-faced Bunting Emberiza spodocephala) at a study site in the Russian Far East using hierarchical distance sampling, a survey method that allows to correct for varying detection probability. Combining the bird survey data and land cover variables from the remote sensing product allowed us to model population density as a function of environmental variables. We found that even small-scale land cover characteristics were predictable using remote sensing data with sufficient accuracy. The overall classification accuracy with pansharpened SPOT 6 data alone amounted to 71.3%. Higher accuracies were reached via the additional integration of SWIR bands (overall accuracy = 73.21%), especially for complex small-scale land cover types such as shrubby areas. This helped to reach a high accuracy in the habitat models. Abundances of the three studied bird species were closely linked to the proportion of wetland, willow shrubs, and habitat heterogeneity. Habitat requirements and population sizes of species of interest are valuable information for stakeholders and decision-makers to maximize the potential success of habitat management measures.

The Ortolan Bunting (Emberiza hortulana) is a farmland bird species, whose population size has declined very sharply in recent decades, especia ll y in Western and Central European countries. The aim of our study in 2015 was to record where the last populations of this critically endangered species in the Czech Republic are located and also what habitat the species associated with. We examined nine areas (925 km2 in total). Two main areas of occurrence (surface mines in northern Bohemia and farmland landscape of Silesia) and two small isolated populations in central Bohemia were registered for this species. In contrast, observations in some traditional areas of its occurence (České středohoří in northern Bohemia, Hovorany-Čejkovice region in southe r n Moravia and Javoricko region in Silesia) were negative. Altogether, we counted 75-79 singing males. Our estimation of the size of the Czech population in 2015 is 75-100 singing males, which indicates further population decline compared to the last mapping in 2001-2003. Furthermore, habitat associat io ns were investigated at two spatial scales and we made habitat compar is o n between farmland and post-mining landscape. Our research highlights a high degree of flexibility in habitat selection of Ortolan Bunting and also positive association with high...