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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Planejamento baseado na estrutura da metaloprotease BPMP-I e avalia??o de tiossemicarbazonas ativas contra a pe?onha da serpente Bothrops pauloensis / Structure-based planning Of BPMP-I metalloprotease and evaluation Of thiosemicarbazones active against The snake venom Bothrops Pauloensis

Ferreira, Francis Barbosa 04 August 2016 (has links)
Submitted by Celso Magalhaes (celsomagalhaes@ufrrj.br) on 2017-05-17T11:44:30Z No. of bitstreams: 1 2016 - Francis Barbosa Ferreira.pdf: 4527522 bytes, checksum: 6a5a6589610ff851e68801c3ec05e3c9 (MD5) / Made available in DSpace on 2017-05-17T11:44:30Z (GMT). No. of bitstreams: 1 2016 - Francis Barbosa Ferreira.pdf: 4527522 bytes, checksum: 6a5a6589610ff851e68801c3ec05e3c9 (MD5) Previous issue date: 2016-08-04 / Coordena??o de Aperfei?oamento de Pessoal de N?vel Superior - CAPES / In this work, semi and thiosemicarbazones selected from the LaDMol-QM library, were used to study their interactions with a metalloproteinase from the snake Bothrops pauloensis (BpMP-I) by molecular modelling and enzymatic inhibition assays with the toxin. The crystalographic structure of BaPI (PDB code: 2W12) was used as a mold to build the 3D model of BpMP-I by homology modeling. The theorical model of BpMP-I showed good quality parameters and was used in a subsequent molecular modeling study. The thiossemicarbazones showed better molecular docking results and in vitro enzymatic inhibitions assays than semicarbazones. Studies by semi-empirical methods indicate a positive enthalpy of interaction, suggesting that the enzyme inhibition by these compounds must be a entropy-driven process. The results were used together to select the LDQM-IN-23 compound and propose rationally designed modifications to improve the interactions with the toxin. The study of the catalytic site of BpMP-I showed that there is an adjacent pocket with amino groups of the peptide bonds available for interaction. All results were used together to design structural changes, aiming the enhancing of the interaction with toxin. Therefore, was proposed the insertion of the carboxyl group with different spacers, containing 2 (LDQM-IN- 23b) and 3 methylene groups (LDQM-IN-23c). The docking results and semi-empiric optimization showed that there was a considerable improvement in the interaction for the modified compounds. The modified compounds were synthesized and tested for biological and enzymatic inhibition activity. It was observed that the IC50 values have improved: the original molecule, LDQM-IN-23 has an IC50 of 3,011 ?M and the modified molecules have IC50 of 79.12 (LDQM-IN-23b) and 1.77 ?M (LDQM-IN-23c). These molecules were tested for inhibition of hemorrhagic activity induced by Bothropoidin, a P-III class metalloproteinase, and by the B. pauloensis whole snake venom. The three molecules can inhibit the hemorrhagic activity induced by isolated toxin and whole venom, and LDQM-IN- 23c showed higher efficiency compared with the other two, and in a rate of 1:10 (w/w venom/inhibitor) the inhibition of the hemorrhagic activity was 100%. A molecular docking study of this lead compound with Snake Venom Metalloproteases (SVMPs) from different snake species and genera showed that this molecule can effectivelly interact with these SVMPs. / Neste trabalho, foram utilizadas semi e tiossemicarbazonas, selecionadas na quimioteca do LaDMol-QM (Dequim-UFRRJ), para o estudo das intera??es destas com o s?tio ativo de uma metaloprotease da pe?onha da serpente Bothrops pauloensis por modelagem molecular e ensaios de inibi??o da atividade enzim?tica e biol?gica sobre a toxina. A estrutura cristalogr?fica de uma metaloprotease (BaPI) complexada com um inibidor (um peptideomim?tico) (c?digo PDB 2W12) foi utilizada como molde para a constru??o do modelo 3D da metaloprotease da pe?onha de B. pauloensis (BpMP-I). O modelo 3D te?rico da BpMP-I, in?dito para esta toxina, apresentou bons par?metros de qualidade, sendo considerado adequado para estudos de planejamento de ligantes baseado na estrutura. As tiossemicarbazonas obtiveram melhores resultados, quando comparados com os resultados das semicarbazonas, tanto para os ensaios de docagem molecular quanto para estudos de inibi??o da atividade enzim?tica in vitro. Estudos por m?todos semiemp?ricos indicam uma entalpia de intera??o positiva, sugerindo que a inibi??o enzim?tica por estes compostos deve ser um processo controlado entropicamente. Os resultados foram utilizados para selecionar o derivado LDQM-IN-23 e propor modifica??es estruturais planejadas racionalmente, visando melhorar a intera??o deste com a toxina. O estudo do s?tio catal?tico da metaloprotease mostrou que esta possui uma cavidade adjacente com grupos amino das liga??es pept?dicas dispon?veis para intera??o. Foi proposta, ent?o, a inser??o de um grupo carboxilato com diferentes espa?adores, 2 (LDQM-IN-23b) e 3 grupos metileno (LDQM-IN-23c). Os resultados de docagem e otimiza??o semi-emp?rica mostraram que houve uma melhora consider?vel na intera??o dos ligantes modificados, os quais foram sintetizados e testados para as atividades de inibi??o enzim?tica e biol?gica. Na inibi??o enzim?tica, houve melhora da CI50 com o aumento do espa?ador. O composto LDQM-IN-23 tem CI50 de 3011,00 ?M e os compostos modificados possuem a CI50 de 79,12 (LDQM-IN-23b) e 1,77 ?M (LDQM-IN- 23c). Estes compostos foram testados para a inibi??o da atividade hemorr?gica in vivo induzida pela Botropoidina, uma metaloprotease da classe P-III, e pela pe?onha bruta de B. pauloensis. Os tr?s compostos conseguiram inibir a atividade hemorr?gica induzida pela toxina isolada e pela pe?onha, sendo que o composto LDQM-IN-23c mostrou maior efici?ncia, quando comparado com os outros dois, e para a propor??o de 1:10 (m/m pe?onha/inibidor) a inibi??o da atividade foi de 100%. Foi realizado um estudo de docagem deste composto l?der com outras metaloproteases de pe?onha de serpentes (SVMPs ? Snake Venom Metalloproteinases), de esp?cies e g?neros diferentes, mostrando que este ligante consegue interagir com outras SVMPs e ? um candidato para inibir a atividade hemorr?gica de SVMPs presentes na pe?onha, n?o s? de B. pauloensis, mas de outras serpentes

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