Direct transpiration rates and plant uptake of naphthalene by a hybrid poplar phytoremediation system located in Oneida, Tennessee were determined using hydrologic and groundwater concentration data. Water table recession analysis techniques were employed to determine direct transpiration rates from the saturated zone of the shallow, unconfined aquifer underlying the site. Direct transpiration rates varied over the growing season (late March to mid-October), with a maximum and mean daily direct transpiration of 0.0100 and 0.0048 feet/day, respectively. During 2004, the maximum direct transpiration rate was observed in May, and rates declined starting in June due to an associated decline in the water table. A technique was developed to estimate the volumetric transpiration rate of each tree based on the breast-height diameters and seasonally variable direct transpiration rates. During peak transpiration, the larger trees at the study site were estimated to directly transpire 4 to 13 gallons per day per tree. Plant uptake rates of naphthalene were estimated by superimposing spatial data (volumetric transpiration rates and naphthalene concentration in groundwater). The mass loss rate of naphthalene from the aquifer as a result of plant uptake during July 2004 was 335 mg/day which only represents 0.117% of the aqueous mass plume. Monthly groundwater profiles showed a decrease of the saturated thickness beneath the system of hybrid poplars between the dormant and active season. This study suggests direct transpiration rates and plant uptake of naphthalene are dependent on variables including climatic parameters, magnitude of the saturated thickness, and the concentration of naphthalene in groundwater. / Master of Science

In 1990, creosote contamination was discovered at the location of a railroad tie treatment facility active in the 1950s until 1973. In 1997, a phytoremediation field study was implemented with the planting of 1,026 hybrid poplar trees and 36 cells of vegetated and unvegetated grass and legume treatments. The hybrid poplar tree phytoremediation system was designed to control infiltration and groundwater flow and enhance subsurface remediation. The grass phytoremediation system was designed to control erosion and enhance surface soil remediation. The overall objectives of this study were to: (1) assess the extent of subsurface remediation, (2) determine the mechanisms of remediation attributable to the hybrid poplar tree phytoremediation system and microbial degradation, (3) assess the effects of the grass phytoremediation system on surface soil remediation, and (4) determine the mechanisms of surface soil remediation resulting from the grass phytoremediation system. / Master of Science

The relationship between an organism’s genome, developmental stage, and environment is complex. The aim of the research presented herein was to provide experimental evidence to contribute to the annotation of the P. trichocarpa genome and to test two major hypotheses addressing the interaction between drought and time of day in A. thaliana and in two hybrid Populus clones. In order to generate data to address these aims, three separate experiments were undertaken. First, all members of the R2R3-MYB family of transcription factors in the P. trichocarpa genome were characterised by phylogenetic analysis and their transcript accumulation patterns across a range of tissues and organs were assessed using whole genome poplar microarrays. Results of this analysis indicated that expansion and diversification of the R2R3-MYB family may have contributed to phenotypic innovation in the Populus lineage. Second, drought-responsive transcriptome adjustments of two hybrid poplar clones, DN34 (P. deltoides X P. nigra) and NM6 (P. nigra X P. maxiomowiczii) were assessed for time-of-day and genotype dependent patterns. For each genotype, each of four time points was characterised by discrete sets of drought-responsive genes. Furthermore, while a number of genes were identified that were responsive to drought in both genotypes, a much larger number of genotype-dependent, drought-responsive transcriptome changes were detected. Finally, the drought-responsive transcriptome adjustments A. thaliana plants were assessed for time-of-day dependent accumulation patterns. Results of this analysis indicate that time-of-day-dependent differences in the drought response were manifest as changes of different magnitudes for a conserved set of genes across the four time points measured. These results emphasise the complex interplay of a plant’s genome, developmental stage, and environment in shaping the observed transcriptome.

Success of hybrid poplar plantations will rely on the efficient management of nutrients and weeds. Relatively little is known about the root uptake characteristics of hybrid poplar and weeds, their belowground interactions and particularly, the quantitative understanding of nutrient uptake using mechanistic models under weed-competing conditions. Therefore, the objectives of this study were to investigate the effects of dandelion and quackgrass on the growth of hybrid poplar, to establish their root uptake characteristics and to quantify their nutrient uptake using the soil supply and nutrient demand (SSAND) model. In a pot study, hybrid poplar stem height, root collar diameter, shoot and root biomass, root length, and N, P and K uptake significantly decreased in the presence of dandelion and quackgrass weeds. Similar weed competition effects on growth of hybrid poplar were also observed in the field at the Pasture and Alfalfa sites where hybrid poplar was grown with and without weeds for 50, 79 and 100 days. In a hydroponic experiment, Imax values for NH4-N, NO3-N, P and K varied significantly among hybrid poplar seedlings and dandelion and quackgrass weed species and was greatest for dandelion followed by hybrid poplar and then quackgrass. The Km values were lowest for quackgrass compared to the other plant species for all of the nutrients. Simulation results from the SSAND model for the pot study showed that N uptake was underpredicted in hybrid poplar by 58 to 73%, depending upon soil type and weed treatment. Incorporation of N mineralization as a model input improve the hybrid poplar N uptake predictions by 24 and 67% in the Pasture and Alfalfa soil, respectively, when grown without weeds. SSAND model underestimated P uptake by 84-89% and overestimated K uptake by 28 to 59% for hybrid poplar depending upon the soil type and weed treatment. In the field, N uptake by hybrid poplar was in close agreement to measured N uptake in the control treatment. N uptake was greatly underestimated for both hybrid poplar and weeds in the weed treatment. Including changing water content greatly improves the N uptake by hybrid poplar and weeds in weed treatments. Results from this study suggest weed control is an essential practice to establish successful hybrid poplar plantations. Also, SSAND model can be an effective tool for predicting the nutrient uptake under two plant species competing environment if all the processes of nutrient supply are adequately described in the model.

As a result of predicted climate change, environmental conditions may make woody plant species such as poplars (Populus spp.) vulnerable unless they are sufficiently adaptable to the new environment. This greenhouse study examined the responses of Hill, Northwest, Okanese and Walker hybrid poplar clones to drought, a potential outcome of a changing climate. Plants were grown from cuttings and subjected to two soil moisture treatments; a well-watered treatment and a drought conditioning treatment in which plants were subjected to cycles of soil moisture deficit. The first study examined growth and gas exchange following treatments, while the second study examined concurrent changes in leaf water potential and gas exchange during a period of increasing soil moisture deficit, following treatments.<p> Hill and Okanese plants had reduced shoot:root ratios, possibly leading to more positive plant moisture balances compared to Northwest and Walker plants. Stomatal characteristics related to steady state gas exchange with Okanese plants having stomata predominantly on lower leaf surfaces, and lower stomatal conductance and Northwest plants having relatively large stomata and increased stomatal conductance. Hill and Okanese plants had the most responsive stomata, which began to close at much higher levels of leaf water potential (-0.45 and -0.54 MPa) than Northwest or Walker plants (-1.03 and -0.88 MPa); however, closure was more gradual in Okanese plants. Drought preconditioning resulted in stomatal closure occurring at higher leaf water potentials in droughted Northwest and Walker plants compared to well-watered plants. Regardless of soil moisture treatment, WUE was highest in Okanese and Walker plants. The drought treatment did however lead to increased WUE in Hill and Northwest plants.<p> Overall, Okanese plants appear to be the best adapted to conditions of reduced soil moisture based on growth and physiological traits, while Northwest and Hill seem better suited to areas where moisture deficits are likely to be less frequent or less severe. Results indicate that variability exists in adaptability of hybrid poplar clones to drought, suggesting that there may also be other hybrid clones that are adaptable to reduced soil moisture conditions, which may merit further investigation.

The relationship between an organism’s genome, developmental stage, and environment is complex. The aim of the research presented herein was to provide experimental evidence to contribute to the annotation of the P. trichocarpa genome and to test two major hypotheses addressing the interaction between drought and time of day in A. thaliana and in two hybrid Populus clones. In order to generate data to address these aims, three separate experiments were undertaken. First, all members of the R2R3-MYB family of transcription factors in the P. trichocarpa genome were characterised by phylogenetic analysis and their transcript accumulation patterns across a range of tissues and organs were assessed using whole genome poplar microarrays. Results of this analysis indicated that expansion and diversification of the R2R3-MYB family may have contributed to phenotypic innovation in the Populus lineage. Second, drought-responsive transcriptome adjustments of two hybrid poplar clones, DN34 (P. deltoides X P. nigra) and NM6 (P. nigra X P. maxiomowiczii) were assessed for time-of-day and genotype dependent patterns. For each genotype, each of four time points was characterised by discrete sets of drought-responsive genes. Furthermore, while a number of genes were identified that were responsive to drought in both genotypes, a much larger number of genotype-dependent, drought-responsive transcriptome changes were detected. Finally, the drought-responsive transcriptome adjustments A. thaliana plants were assessed for time-of-day dependent accumulation patterns. Results of this analysis indicate that time-of-day-dependent differences in the drought response were manifest as changes of different magnitudes for a conserved set of genes across the four time points measured. These results emphasise the complex interplay of a plant’s genome, developmental stage, and environment in shaping the observed transcriptome.

Success of hybrid poplar plantations will rely on the efficient management of nutrients and weeds. Relatively little is known about the root uptake characteristics of hybrid poplar and weeds, their belowground interactions and particularly, the quantitative understanding of nutrient uptake using mechanistic models under weed-competing conditions. Therefore, the objectives of this study were to investigate the effects of dandelion and quackgrass on the growth of hybrid poplar, to establish their root uptake characteristics and to quantify their nutrient uptake using the soil supply and nutrient demand (SSAND) model. In a pot study, hybrid poplar stem height, root collar diameter, shoot and root biomass, root length, and N, P and K uptake significantly decreased in the presence of dandelion and quackgrass weeds. Similar weed competition effects on growth of hybrid poplar were also observed in the field at the Pasture and Alfalfa sites where hybrid poplar was grown with and without weeds for 50, 79 and 100 days. In a hydroponic experiment, Imax values for NH4-N, NO3-N, P and K varied significantly among hybrid poplar seedlings and dandelion and quackgrass weed species and was greatest for dandelion followed by hybrid poplar and then quackgrass. The Km values were lowest for quackgrass compared to the other plant species for all of the nutrients. Simulation results from the SSAND model for the pot study showed that N uptake was underpredicted in hybrid poplar by 58 to 73%, depending upon soil type and weed treatment. Incorporation of N mineralization as a model input improve the hybrid poplar N uptake predictions by 24 and 67% in the Pasture and Alfalfa soil, respectively, when grown without weeds. SSAND model underestimated P uptake by 84-89% and overestimated K uptake by 28 to 59% for hybrid poplar depending upon the soil type and weed treatment. In the field, N uptake by hybrid poplar was in close agreement to measured N uptake in the control treatment. N uptake was greatly underestimated for both hybrid poplar and weeds in the weed treatment. Including changing water content greatly improves the N uptake by hybrid poplar and weeds in weed treatments. Results from this study suggest weed control is an essential practice to establish successful hybrid poplar plantations. Also, SSAND model can be an effective tool for predicting the nutrient uptake under two plant species competing environment if all the processes of nutrient supply are adequately described in the model.

As a result of predicted climate change, environmental conditions may make woody plant species such as poplars (Populus spp.) vulnerable unless they are sufficiently adaptable to the new environment. This greenhouse study examined the responses of Hill, Northwest, Okanese and Walker hybrid poplar clones to drought, a potential outcome of a changing climate. Plants were grown from cuttings and subjected to two soil moisture treatments; a well-watered treatment and a drought conditioning treatment in which plants were subjected to cycles of soil moisture deficit. The first study examined growth and gas exchange following treatments, while the second study examined concurrent changes in leaf water potential and gas exchange during a period of increasing soil moisture deficit, following treatments.<p> Hill and Okanese plants had reduced shoot:root ratios, possibly leading to more positive plant moisture balances compared to Northwest and Walker plants. Stomatal characteristics related to steady state gas exchange with Okanese plants having stomata predominantly on lower leaf surfaces, and lower stomatal conductance and Northwest plants having relatively large stomata and increased stomatal conductance. Hill and Okanese plants had the most responsive stomata, which began to close at much higher levels of leaf water potential (-0.45 and -0.54 MPa) than Northwest or Walker plants (-1.03 and -0.88 MPa); however, closure was more gradual in Okanese plants. Drought preconditioning resulted in stomatal closure occurring at higher leaf water potentials in droughted Northwest and Walker plants compared to well-watered plants. Regardless of soil moisture treatment, WUE was highest in Okanese and Walker plants. The drought treatment did however lead to increased WUE in Hill and Northwest plants.<p> Overall, Okanese plants appear to be the best adapted to conditions of reduced soil moisture based on growth and physiological traits, while Northwest and Hill seem better suited to areas where moisture deficits are likely to be less frequent or less severe. Results indicate that variability exists in adaptability of hybrid poplar clones to drought, suggesting that there may also be other hybrid clones that are adaptable to reduced soil moisture conditions, which may merit further investigation.

No description available.

Afforestation and stand development can significantly affect soil respiration and net ecosystem productivity (NEP). I studied 1) the effects of afforestation on NEP by comparing cropland previously planted to barley (on a barley-barley-alfalfa-alfalfa-alfalfa rotation) and that converted to a hybrid poplar (Populus deltoides Populus petrowskyana var. Walker) plantation and 2) the NEP along a chronosequence of stands aged 5-, 8-, 14-, and 16-year old in 2009 in central Alberta, Canada. Soil respiration and NEP decreased in the first two to three years after afforestation, while both generally increased with stand development. The ecosys model was used to simulate carbon dynamics in the plantations over a 20-year rotation under contrasting soil conditions. Soil conditions of the 14-year-old plantation accumulated the greatest amount of ecosystem carbon over the whole rotation. The research indicated that plantations could be a net carbon source in the first few years after afforestation and then became a net carbon sink, helping to mitigate net CO2 emissions for the remainder of the rotation. / Soil Science