Intramolecular hydroamination represents a potentially general, simple strategy to access various nitrogen heterocycles. While important progress has been accomplished in recent years, six-membered ring formation via alkene hydroamination is typically difficult and limited to terminal alkenes, suggesting that only 2-methylpiperidines can be accessed reliably with current methods. As part of the Beauchemin group efforts on metal-free concerted hydroamination methods, the first part of this thesis describes the development of a Cope-type hydroamination-Meisenheimer rearrangement (CHMR) sequence that is applicable in inter- and intramolecular reactions. Data acquired from optimization on a difficult substrate (coniine) and the successful application of the CHMR sequence to the syntheses of N-norreticuline and 10-desbromoarborescidine are reported. The amination of alkenes is surprisingly scarcely used in the synthesis of complex alkaloids despite its potential for the construction of structurally challenging molecules while avoiding functional group interconversions. Hence, the second part of this thesis describes the studies on a novel amination sequence, consisting of an intermolecular Diels-Alder followed by an intramolecular hydroamination reaction, in the efforts towards the synthesis of biologically active and structurally complex Manzamine A. As such, the synthesis of the model substrates, including the development of a novel family of aminodienes, as well as the assessment of their reactivity towards [4+2] cycloadditions is reported.

Nitrogen is a vital element for the existence of life, as shown by its frequent presence in essential biomolecules, and inclusion into valuable drugs. Sulfonamides and their heterocycle counterpart, sultams, are N-containing functional groups and metabolically stable amide isosteres. Sulfa drugs, which contain these moieties, have a broad spectrum of medical applications. The industrial value of sultams has prompted the development of novel methods for their synthesis, and metal-catalyzed C-H amination reactions with nitrene precursors have recently shown promise. The current thesis presents a survey of conditions for benzo[d]sultam synthesis via intramolecular C-H amination of N-acyloxysulfonamides. Initially, using Ru(Bpy)3(PF6)2 as a photocatalyst and Et3N as a base enabled benzo[d]sultam formation by tertiary C-H amidation. The photoredox conditions were optimized to accommodate other 2,6-disubstituted-N-acyloxysulfonamides upon omission of the base, which consistently gave sulfonamide byproducts. Control reactions indicated that a thermal base-induced reaction was simultaneously occurring, both enabling productive C-H amidation and byproduct formation. Systematic optimization of base-induced conditions enabled sultam synthesis from 2,6-dialkyl- and tertiary ortho-monoalkyl-precursors in moderate yield, but sulfonamide formation still impeded the reaction.   An additional control reaction indicated that a thermal Ruthenium-catalyzed C-H amidation reaction was possible. Indeed, heating N-acyloxysulfonamides in the presence of Ru(Bpy)3(PF6)2 and in the absence of light and base enabled efficient C-H amidation, particularly with DCE as a solvent. A representative scope of 12 benzo[d]sultams was then synthesized including entries derived from ortho-monoalkyl-N-acyloxyarylsulfonamides. Aside from optimizing an efficient reaction for the synthesis of benzo[d]sultams through the cyclization of N-acyloxyarylsulfonamides, including the challenging primary C-H amidation of orthomonomethyl-substrates, the unique reaction conditions developed in this thesis set precedent for future investigation of hydroxylamine derived nitrene precursors. The optimization and design of superior ruthenium catalysts could allow for more challenging C-H amination reactions with hydroxysulfonamide derivatives and similar N-oxy nitrene precursors.

This thesis describes three separate and unrelated chemical experiments. The first investigates analogs for the compound DDT. The second investigates the properties of O-substituted hydroxylamines. The third investigates the action of slight changes to the structure of an antihistaminic agent.

Des catalyseurs à base de métaux nobles (Pt, Pd, Ir, Ru et Rh) supportés (TiO2, ZrO2, CeO2 et CeZrO2) ont dans un premier temps été préparés. L'Oxydation en Voie Humide Catalytique de l'ammoniaque en présence de ces catalyseurs a alors été réalisée. Le platine est le métal le plus actif. L'iridium et le palladium sont les plus sélectifs en diazote. Le catalyseur Pt/TiO2 est le plus performant car il combine une très forte activité et une sélectivité en diazote peu éloignée de celles de l'iridium et du palladium. Une étude approfondie sur ce catalyseur (méthode de préparation, nature du précurseur métallique,…) a montré que seule la basicité de surface du catalyseur a un impact négatif sur la sélectivité en diazote. Les autres paramètres étudiés sont non significatifs. Le travail réalisé sur les conditions opératoires (PO2, T, mcatalyseur, pH et concentration d'ammoniaque) toujours en présence de Pt/TiO2 ont montré qu'il est nécessaire de contrôler la fonction oxydante et notamment le rapport nO2/nNH3. En effet, si la valeur de ce rapport est trop élevée (nO2/nNH3 >> 0,75) alors la sélectivité en diazote se dégrade fortement. Pour terminer, des catalyseurs bimétalliques PtIr/TiO2 et PtPd/TiO2 ont été préparés afin d'allier l'activité du platine à la sélectivité en diazote du palladium ou iridium. L'utilisation de ces catalyseurs s'avère peu intéressante car leur comportement est similaire à celui des mélanges mécaniques. De plus, la sélectivité en diazote est également dégradée pour nO2/nNH3 >> 0,75 avec ces catalyseurs / TiO2, ZrO2, CeO2 and CeZrO2 supported noble metal catalysts (Pt, Pd, Ir, Ru and Rh) have been in a first time prepared to be used in the Catalytic Wet Air Oxidation of ammonia. The first results show that platinum is the most active metal. Palladium and iridium are the most selective toward nitrogen. Pt/TiO2 is the most interesting catalyst because it combines a very strong activity and a selectivity toward nitrogen close to iridium and palladium. An in-depth study on this catalyst (preparation method, nature of the metallic precursor…) shows that the single parameter which has a negative impact on the selectivity toward nitrogen is the basicity of the catalyst surface. The work realized on the operating conditions (PO2, catalyst weight, pH and ammonia concentration) in the presence of Pt/TiO2 shows the necessity to control the oxidizing function and particularly the nO2/nNH3 ratio. Indeed, if the value of this ratio is too high (nO2/nNH3 >> 0,75) then the selectivity toward nitrogen degrades strongly. To end, PtIr/TiO2 and PtPd/TiO2 bimetallic catalysts have been prepared to combine the activity of the platinum and the selectivity of palladium/iridium to nitrogen. These catalysts are not interesting because their behaviour is similar to the mechanical mixtures. Furthermore, the selectivity toward nitrogen is also degraded for nO2/nNH3 >> 0,75 with these catalysts

No description available.

This PhD project has expanded the knowledge in the area of profluorescent nitroxides with regard to the synthesis and characterisations of novel profluorescent nitroxide probes as well as physical characterisation of the probe molecules in various polymer/physical environments. The synthesis of the first example of an azaphenalene-based fused aromatic nitroxide TMAO, [1,1,3,3-tetramethyl-2,3-dihydro-2-azaphenalen-2-yloxyl, was described. This novel nitroxide possesses some of the structural rigidity of the isoindoline class of nitroxides, as well as some properties akin to TEMPO nitroxides. Additionally, the integral aromatic ring imparts fluorescence that is switched on by radical scavenging reactions of the nitroxide, which makes it a sensitive probe for polymer degradation. In addition to the parent TMAO, 5 other azaphenalene derivatives were successfully synthesised. This new class of nitroxide was expected to have interesting redox properties when the structure was investigated by high-level ab initio molecular orbitals theory. This was expected to have implications with biological relevance as the calculated redox potentials for the azaphenalene ring class would make them potent antioxidant compounds. The redox potentials of 25 cyclic nitroxides from four different structural classes (pyrroline, piperidine, isoindoline and azaphenalene) were determined by cyclic voltammetry in acetonitrile. It was shown that potentials related to the one electron processes of the nitroxide were influenced by the type of ring system, ring substituents or groups surrounding the moiety. Favourable comparisons were found between theoretical and experimental potentials for pyrroline, piperidine and isoindoline ring classes. Substitution of these ring classes, were correctly calculated to have a small yet predictable effect on the potentials. The redox potentials of the azaphenalene ring class were underestimated by the calculations in all cases by at least a factor of two. This is believed to be due to another process influencing the redox potentials of the azaphenalene ring class which is not taken into account by the theoretical model. It was also possible to demonstrate the use of both azaphenalene and isoindoline nitroxides as additives for monitoring radical mediated damage that occurs in polypropylene as well as in more commercially relevant polyester resins. Polymer sample doped with nitroxide were exposed to both thermo-and photo-oxidative conditions with all nitroxides showing a protective effect. It was found that isoindoline nitroxides were able to indicate radical formation in polypropylene aged at elevated temperatures via fluorescence build-up. The azaphenalene nitroxide TMAO showed no such build-up of fluorescence. This was believed to be due to the more labile bond between the nitroxide and macromolecule and the protection may occur through a classical Denisov cycle, as is expected for commercially available HAS units. Finally, A new profluorescent dinitroxide, BTMIOA (9,10-bis(1,1,3,3- tetramethylisoindolin-2-yloxyl-5-yl)anthracene), was synthesised and shown to be a powerful probe for detecting changes during the initial stages of thermo-oxidative degradation of polypropylene. This probe, which contains a 9,10-diphenylanthracene core linked to two nitroxides, possesses strongly suppressed fluorescence due to quenching by the two nitroxide groups. This molecule also showed the greatest protective effect on thermo-oxidativly aged polypropylene. Most importantly, BTMIOA was found to be a valuable tool for imaging and mapping free-radical generation in polypropylene using fluorescence microscopy.

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No description available.

No description available.

Our understanding of the folding of membrane proteins lags behind that of soluble proteins due to the challenges posed by the exposure of hydrophobic regions during in vitro chemical denaturation and refolding experiments. While different folding models are accepted for soluble proteins, only the two-stage model and the long-range interactions model have been proposed so far for helical membrane proteins. To address our knowledge gap on how different membrane proteins traverse their folding landscapes, Chapter 2 investigates the structural features of SDS-denatured states and the kinetics for reversible unfolding of sensory rhodopsin II (pSRII), a retinal-binding photophobic receptor from Natronomonas pharaonis. pSRII is difficult to denature, and only SDS can dislodge the retinal chromophore without rapid aggregation. Even in 30% SDS (0.998 $\mathit{\Chi}_{SDS}$), pSRII retains the equivalent of six out of seven transmembrane helices, while the retinal binding pocket is disrupted, with transmembrane residues becoming more solvent-exposed. Folding of pSRII from an SDS-denatured state harbouring a covalently-bound retinal chromophore shows deviations from an apparent two-state behaviour. SDS denaturation to form the sensory opsin apo-protein is reversible. This chapter establishes pSRII as a new model protein which is suitable for membrane protein folding studies and has a unique folding mechanism that differs from those of bacteriorhodopsin and bovine rhodopsin. In Chapter 3, SDS-denatured pSRII, acid-denatured pSRII and sensory opsin obtained by hydroxylamine-mediated bleaching of pSRII were characterised by solution state NMR. 1D $^1$H and $^{19}$F NMR were first used to characterise global changes in backbone amide protons and tryptophan side-chains. Residue-specific changes in backbone amide chemical shifts and peak intensities in 2D [$^1$H,$^{15}$N]-correlation spectra were analysed. While only small changes in the chemical environment of backbone amides were detected, changes in backbone amide dynamics were identified as an important feature of SDS- and acid-denatured pSRII and sensory opsin. $^{15}$N relaxation experiments were performed to study the backbone amide dynamics of SDS-denatured pSRII, reflecting motions on different timescales, including fast fluctuations of NH bond vectors on the ps-ns timescale and the lack of exchange contributions on the µs timescale. These studies shed insight on differences in the unfolding pathways under different denaturing conditions and the crucial role of the retinal chromophore in governing the structural integrity and dynamics of the pSRII helical bundle. Hydrogen bonds play fundamental roles in stabilising protein secondary and tertiary structure, and regulating protein function. Successful detection of hydrogen bonds in denatured states and during protein folding would contribute towards our understanding on the unfolding and folding pathways of the protein. Previous studies have demonstrated residue-specific detection of stable and transient hydrogen bonds in small globular proteins by measuring $^1{\it J}_{NH}$ scalar coupling constants using NMR. In Chapter 4, different methods for measuring $^1{\it J}_{NH}$ scalar coupling were explored using RalA, a small GTPase with a mixed alpha/beta fold, as proof-of-concept. Detection of hydrogen bonds was then attempted with OmpX, a beta-barrel membrane protein, both in its folded state in DPC micelles and in the urea-denatured state. While $^1{\it J}_{NH}$ measurement holds promise for studying hydrogen bond formation, further optimisation of NMR experiments and utilisation of perdeuterated samples are required to improve the precision of such measurements in large detergent-membrane protein complexes. Naturally occurring split inteins can mediate spontaneous trans-splicing both in vivo and in vitro. Previous studies have demonstrated successful assembly of proteorhodopsin from two separate fragments consisting of helices A-B and helices C-G via a splicing site in the BC loop. To complement the in vitro unfolding/folding studies, pSRII assembly in vivo was attempted by introducing a splicing site in the loop region of the beta-hairpin constituting the BC loop of pSRII. The expression conditions for the N- and C-terminal pSRII-intein segments were optimised, and the two segments co-expressed. However, the native chromophore was not observed. Further optimisation is required for successful in vivo trans-splicing of pSRII and application of this approach towards understanding the roles of helices and loops in the folding of pSRII.