In estuaries, like the Indian River Lagoon, mesozooplankton have a vital role in the food web by connecting trophic levels. In this study, mesozooplankton abundance and species composition were monitored weekly on the incoming and outgoing tides from September 2006 to May 2009. For the incoming tide, the mean abundance was 2298.2 mesozooplankton/m3 (+/-325.2), and for the outgoing tide the mean abundance was 1180.0 mesozooplankton/m3 (+/-153.1). The mesozooplankton abundance on the incoming tide was significantly greater than on the outgoing tide. The most abundant type of mesozooplankton was the copepod Acartia tonsa, representing 35.0% and 52.1% of the individuals on the incoming and outgoing tides respectively. Mesozooplankton abundance values were compared with environmental data obtained from the South Florida Water Management District. The strongest positive correlation was found between chlorophyll a concentrations and A. tonsa abundance, likely due to phytoplankton being the primary food source for A. tonsa. / by Miranda Hoover Kerr. / Thesis (M.S.)--Florida Atlantic University, 2009. / Includes bibliography. / Electronic reproduction. Boca Raton, Fla., 2009. Mode of access: World Wide Web.

Seagrasses are important foundation species in coastal ecosystems. Genetic diversity of seagrasses can influence a number of ecological factors including, but not limited to, disturbance resistance and resilience. Seagrasses in the Indian River Lagoon (IRL), Florida are considered to be highly disturbed due to frequent events, like algal blooms, that impair water quality, reducing available light for seagrass growth. Halodule wrightii is a dominant seagrass throughout the IRL, but its genetic diversity has only been quantified in a few Gulf of Mexico and Florida Bay populations and little is known about its potential ecological consequences. I quantified the genetic variation of H. wrightii using microsatellite markers in the southern IRL to determine: (i) how disturbance history influenced genetic diversity, (ii) if morphology of clones was, in part, genetically controlled and related to disturbance history, and (iii) if genotypes showed phenotypic plasticity in response to disturbances. In the IRL, H. wrightii populations exhibited moderate genetic diversity that varied with disturbance history. The disturbance history of a population was classified by the variance in the percent occurrence of H. wrightii over a 16-year period. Genotypic richness and clonal diversity of H. wrightii increased with increasing disturbance histories. Other genetic diversity measures (e.g., allelic richness, observed heterozygosity) did not change with disturbance history. These findings suggest that impacts to seagrass coverage over time can change the genotypic composition of populations. When different genotypes of H. wrightii were grown in a common garden, differences in leaf characteristics among genotypes provided evidence that morphological trait variation is, in part, explained by genetic variance. The disturbance history of genotypes did not directly affect morphological traits. However, significant genotype x site (within disturbance history) interactions found greater variation in shoot density and below ground traits of H. wrightii genotypes from sites of intermediate disturbance history. Traits of H. wrightii were shown to be phenotypically plastic. Significant genotype x environment interactions for shoot density and height demonstrated that genotypes responded differently by increasing, decreasing, and not changing sizes in response to light reduction. Genetic diversity of H. wrightii has strong implications for ecological function in coastal communities. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2016. / FAU Electronic Theses and Dissertations Collection

The goal of this study was to develop an alternative approach to typical seagrass transplantation techniques that damage the donor bed. Floating individuals of Halodule wrightii were collected in the Indian River Lagoon (IRL), Florida, during fall of 2013 and spring of 2014, with the fall collection planted in outdoor tanks. Only 25% of individuals collected in the fall survived the winter in the tanks. Individuals from both collections were deployed onto biodegradable mats in a capped dredge hole in the IRL in March, 2014. Approximately 66% of the mats survived the six-month experiment, and the area covered by seagrass quadrupled. Growth in shoot count, average height, horizontal spread, and biomass was similar for both fall and spring treatments. Thus, time and effort of overwintering had no benefit over spring harvesting. The use of floating individuals can provide a more practical, environmentally friendly alternative to traditional transplanting for seagrass re storation. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2015. / FAU Electronic Theses and Dissertations Collection

Coastal wetland plants serve as ecological engineers in a physiologically stressful environment and the loss of coastal wetlands can cause negative effects throughout the estuarine system. Due to increased degradation of coastal habitats worldwide, interest in restoration has increased around the world. An understanding of the biotic processes affecting species distribution and diversity is critical for future conservation, management, and restoration of coastal wetlands. The purpose of my study was to test the effects of biotic interactions on native coastal wetland plants and determine how these interactions may be incorporated into current and future restoration projects. I had three primary goals for my dissertation. First, I evaluated the effectiveness of natural regeneration of coastal wetland communities following hydrological restoration. Second, I examined effects of biotic interactions between mangroves and other wetland species by experimentally testing: 1) trapping capabilities of early successional plant species on Rhizophora mangle propagules, 2) effects of pre-dispersal propagule damage on native mangrove species, 3) facilitative and competitive interactions between the plants Rhizophora mangle, Batis maritima, Sarcocornia perennis, and the fiddler crab, Uca pugilator using mesocosms. Third, I evaluated the combined effects of biotic and abiotic interactions on survival and growth of R. mangle propagules during their first year of establishment using a manipulative field experiment. Results from my study increase our knowledge of the importance of biotic interactions in coastal wetland communities, their role in early successional stages, and have direct applications to coastal wetland restoration and management.

This study combined documentation of four boat propeller scar types in Halodule wrightii seagrass beds in Mosquito Lagoon, Florida with manipulative field experiments to document scar recovery times with and without restoration. Scar types ranged from the most severe scar type (Type 1) with trench formation which had no roots or shoots in the trench, to the least severe (Type 4) scars that had no depth, intact roots and shoots shorter than the surrounding canopy. For 110 measured existing scars, the frequency of each scar type was 56% for Type 1, 10% for Type 2, 7% for Type 3, and 27% for Type 4. In the first manipulative experiment, experimental scars were created to document the natural recovery time of H. wrightii for each scar severity within one year. Type 4 scars recovered to the control shoot density at 2 months, while Types 1, 2, and 3 scars did not fully recover in one year. Mean estimated recovery for H. wrightii is expected in 25 months for Type 1, and 19 months for Types 2 and 3. For the second manipulative experiment, three restoration methods were tested on the Type 1 scars over a 1 year period. Restoration methods included: (1) planting H. wrightii in the scar trench, (2) filling the trench with sand, and (3) filling with sand plus planting H. wrightii. There was complete mortality of all transplants at 2 months and only 25% of scars retained fill sand after 1 year. With dense adjacent seagrass beds, natural recovery was more successful than any of my restoration attempts. Thus, I suggest that managers should concentrate on preventing seagrass destruction rather than restoration.

Algal blooms have caused significant losses in seagrass and macroalgae in the Indian River Lagoon, FL. To gain an understanding of these effects, samples of Gracilaria sp., Halodule wrightii, pinfish, and white mullet were taken throughout October and November of 2013. Samples from 2001 of Gracilaria sp., Halodule wrightii, Syringodium filiforme, Thalassia testudinum, pinfish, spotted seatrout, and white mullet were also obtained. Stable isotope data were obtained from these samples and compared by year and species. Halodule wrightii and pinfish had a significantly larger 2013 [delta]C13 values. Halodule wrightii also displayed lower total %C and total %N averages for 2013 when compared to 2001 data. These results may indicate a link between Halodule wrightii and pinfish, with pinfish consuming organisms that use Halodule wrightii as their source of nutrients. The location of collections also seemed to play a role in stable isotope values, as indicated by samples of Halodule wrightii.

Macroalgal blooms are responses to nutrient enrichment in shallow seagrass ecosystems like the Indian River Lagoon (IRL), Florida. Little is known about nitrogen (N) and phosphorus (P) limitation or the importance of morphological/physiological characteristics of bloom-forming macroalgae (Ulva lactuca, Hypnea musciformis, and Gracilaria tikvahiae) in the IRL. We hypothesized: 1) all species would proliferate in nutrient-rich Titusville, 2) opportunistic U. lactuca would dominate, 3) Rapid Light Curves (RLCs) would assess nutrient status, and 4) nutrient concentrations would regulate growth more than N:P ratios. Field studies showed rapid biomass doubling times of 2 days (U. lactuca; November 2012) in urbanized Titusville. RLCs in a guano-enriched island off Big Pine Key (BPK) and Titusville (Ulva spp.) were similar due to P-saturation. Laboratory studies showed three-fold higher RLCs and two-fold faster growth at high nutrient concentrations of N and P. Reductions of both N and P will be required to moderate future blooms. / by Lisa N.A. Vlaming. / Thesis (M.S.)--Florida Atlantic University, 2013. / Includes bibliography. / Mode of access: World Wide Web. / System requirements: Adobe Reader.

A brown tide bloom of the pelagophyte Aureoumbra lagunensis caused significant impacts to north Indian River Lagoon (IRL) in 2012-2013, including seagrass die-offs, fish kills, and reduced growth and grazing of ecologically important bivalves. There is potential for another pelagophyte, Aureococcus anophagefferens, to expand into this system. Filtration rates (FR) of the pleated tunicate Styela plicata exposed to Aureoumbra lagunensis and Aureococcus anophagefferens were measured against exposure to a control alga (Tisochrysis lutea) in order to determine its potential use as a bioremediator against these harmful algal blooms (HABs). In addition, whether S. plicata might serve as a vector of HABs was studied by culturing fecal deposits. Short-term exposure to HABs significantly reduced FR, whereas long-term exposure indicates comparable cell removal compared to the control. Vector potential of S. plicata was inconclusive. Results warrant further research to determine whether S. plicata can acclimate or respond to HAB conditions over time. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2015. / FAU Electronic Theses and Dissertations Collection

Diet change over time is assessed for a Malabar II period (900 C.E. to 1565 C.E.) Ais indigenous community in Cape Canaveral, Florida, at the Penny Plot site (8BR158). To this end, 7,760 faunal fragments were examined, with 1,876 identified at the species, genus, or family level. Through identification and analysis of faunal remains, it can be concluded that, while the amounts of overall remains left behind as a whole increased, there were no significant changes in the types of fauna utilized or patterns of consumption. This suggests that the indigenous people who occupied this site managed their resources very effectively for a long period of time and likely passed on management strategies through generations to allow for plentiful food for years. This area of Florida has received little serious attention from scholars in the past, and through studying sites such as the Penny Plot site we are starting to paint a picture of precontact and colonial era Indigenous life in coastal Central Florida. Thus, we are better educating ourselves about the people who came first to Florida and their complex relationship with their surrounding environment, paralleling that of modern Floridians.'

The Indian River Lagoon, Florida, is a unique closed “bar built” estuary system that has little interchange with the Atlantic Ocean and which is home to many resident species. Three fish species were investigated to see if their isotopic and fatty acid signatures differed based on geographic location. The goal was to assess the degree of resolution of spatial variation that is possible when using stable isotope and fatty acid signature analysis to interpret feeding habits and potential linkages between feeding habits and health status. Spotted seatrout (n=40), pinfish (n=60) and white mullet (n=60) were collected over a 4 week period at sites 30 km apart in two distinct biogeographic regions of the IRL. Fish were analyzed for stable isotope (δ13C and δ15N) and fatty acid composition. All three species were significantly different from each other in both isotopic and fatty acid signatures. In the North Indian River segment, spotted seatrout, white mullet and pinfish had mean values (± SE) for δ13C of -18.00 ± 0.08, -14.59 ± 0.07 and -16.88 ± 0.04 respectively and for δ15N, mean values were 14.43 ± 0.05, 8.30 ± 0.04 and 10.43 ± 0.03 respectively. For the North-Central Indian River segment, spotted seatrout, white mullet and pinfish had mean values for δ13C of -18.98 ± 0.02, -16.25 ±0.06 and -16.94 ± 0.04 respectively and for δ15N, mean values were 14.21 ± 0.02, 8.07 ± 0.03 and 10.64 ±0.03 respectively. When species and location interactions were examined using ANCOVA, a post-hoc Tukey’s HSD test showed that δ13C was significantly affected by sampling segment only for spotted seatrout and that there was no significant effect of location on δ15N values. Spotted seatrout was the only species that differed between segments for δ13C. Classification and Regression Tree (CART) analysis was then performed on the “extended dietary fatty acids” for each individual species and collection location. In this analysis, all three species were correctly identified to segment (white mullet - MR 2/53 p~ 0.03; spotted seatrout (MR 0/40), and pinfish (MR 0/56) indicating that individual species were exhibiting significant differences in their fatty acid signature over distances of 30 km. The ability to discern fine-scale differences in potential prey allows for the possibility of better resolution of dolphin feeding habits and hence a better understanding of both habitat utilization and health impacts. Due to limited exchange of clean salt water, contaminants can theoretically become a problem and there are indications that the health of the resident population of bottlenose dolphins (Tursiops truncatus) has been declining over recent years.