The plasma inorganic phosphate level may be influenced by (1) factors affecting the intermediary metabolism of phosphorus, (2) alternation in the degree of absorption of phosphorus, (3) alteration in the degree of excretion of phosphorus. In the introduction, the intermediary metabolism of phosphorus, particularly as far as the endocrine glands are concerned, is discussed in detail, whereas the absorption and excretion are but briefly outlined.

Inorganic phosphate \((P_i)\) is an essential nutrient whose intracellular levels are maintained by the PHO pathway in Saccharomyces cerevisiae. \(P_i\) limitation triggers upregulation of the PHO genes whose gene products primarily function to counterbalance the \(P_i\) deficiency. Despite a growing catalogue of genes that are involved in signaling of the PHO pathway, little is known about how cells actually sense \(P_i\) limitation. To better characterize the \(P_i\) sensing mechanism, I exploited two comprehensive and orthogonal approaches: 1) genome-wide genetic screening to identify novel genes involved in signaling \(P_i\) limitation through the PHO pathway and characterization of genetic interactions among these genes and 2) liquid chromatography /mass spectrometry (LC/MS)-based metabolic profiling to characterize the metabolomic response to changes in \(P_i\) availability. In genome-wide screening, I found that the aah1 mutant constitutively activated the PHO pathway and showed that AAH1 is involved in regulating PHO pathway activity. Moreover, I identified several novel genetic interactions of genes involved in inositol polyphosphate metabolism with those involved in purine metabolism and mitochondrial fatty acid biosynthesis.Through metabolomic profiling, I showed that all adenine nucleotides were downregulated in the constitutively induced ado1, adk1, and aah1 mutants in high \(P_i\) as well as in the wild type strain in low \(P_i\). These observations led to the hypothesis that downregulation of adenine nucleotides triggers activation of the PHO pathway. However, I find that decreases in adenine nucleotides appear to be the consequence of downregulation of glycolysis and of the pentose phosphate pathway rather than an activation signal for the PHO pathway.Among all the detected metabolites, S-adenosyl-L-homocysteine (SAH) responded the most quickly and significantly to changes in \(P_i\) concentration. It was known that SAH is an inhibitor of de novo synthesis of phosphatidylcholine (PC). I showed that overall PC levels were downregulated in low \(P_i\), suggesting that phospholipid metabolism is downregulated in low \(P_i\) conditions. Furthermore, I observed that exogenous SAH induces activation of the PHO pathway in high \(P_i\) implying a possible role of SAH as an initiating activation signal of the PHO pathway. / Chemistry and Chemical Biology

Given the concern for environmental preservation, by cause of human activities and its profound impacts, research works have led to a shift from conventional said agriculture using agrochemicals and fertilizers to agriculture that pursues ways less harmful to the environment management. The objective was to prospect and also isolate the bacteria with proper characteristics for growth benefits from the rhizosphere sugarcane soil and its subsequent use in production of microbial inoculants. As to reach this purpose, 24 soil samples from sugarcane mills in the state of Alagoas were collected and isolated for qualification and quantification of soluble phosphorus, production of exopolysaccharides (EPS), verification of biofilm formation, production of indole acetic acid (IAA), cytokinins and gibberellins production, rooting induction and sugarcane budding. The used methodology for phosphate solubilization was performed according to the recommendations of the authors referenced in the bibliography. According to the results obtained for phosphate solubilizing growth medium (Nbrip) showed that 17% had high capacity and inorganic phosphate solubilizing growth medium capacity Reached 67%. The others results stayed between low or absence of solubilization. Of the isolates tested, 75 % Were able to grow in medium with low water activity Aw 0919 at 30 °C and the appearance of colonies was Observed five days after inoculation. Results for EPS production at room temperature showed that 4% of the isolates surveyed achieved a hight production, followed by 42% which has achieved average production and the remaining 54% of low production. Analysing biofilm production capacity in TSB medium in absorbance of 540 nm were observed that 4% of the isolates had a higher frequency for biofilm formation, 83% achieved average production and 13% of isolates with low frequency output. Larger quantity for production of IAA in the presence precursor L-tryptophan was observed at the end of 72 hours despite significant differences among the isolates, except for isolate 7 which was considered high 51.62194 μg.mL-1 and isolated 6 to lower production 14.98113 μg.mL-1, all other isolates were classified as high producers. Among the isolates tested 25% were able to synthesize cytokines and 83.33% synthesized gibberellin compared to the control. All isolates, compared in control, increased in size which suggested the action of one or both hormones in question at the same time. The sprouting of inoculated buds compared in control to those without inoculation, the RB72454 variety of sugarcane, in end of the evaluation, in the presence of isolated samples 4, 16, 21 and 24 demonstrated that only 25% of the buds had sprouted and grew roots, not differing significantly from the control. As the result inoculation significantly increased a sprouting rate up to 83.33% of the isolates, and the best results obtained were in samples 7, 12, 19 and 20 (94.5, 100, 95 and 94.5% respectively) in both the number of sprouted buds as for speed emission of shoots and roots. / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Tendo em vista a preocupação com a preservação ambiental, devido à constatação de que as atividades antrópicas podem causar profundos impactos, os trabalhos de pesquisa têm levado a uma mudança da agricultura dita convencional, que utiliza produtos agroquímicos e fertilizantes, para uma agricultura que busca formas de manejo menos nocivos ao ambiente. Objetivou-se a prospecção e o isolamento de bactérias com a características para promoção de crescimento a partir do solo rizosfera de cana – de – açúcar para serem utilizados na produção de inoculantes microbianos. Foram coletadas 24 amostras de solos provenientes de usinas sucroalcooleiras do Estado de Alagoas, de onde foram retirados os isolados para qualificação e quantificação de fósforo solúvel, produção de Exopolissacarídeos (EPS) e a verificação da formação de biofilme, produção de ácido indolacético (AIA), Produção de citocininas e giberelinas, Indução de enraizamento e brotação de gemas de cana-de-açúcar. A metodologia utilizada para solubilização de fosfato foi realizada de acordo com as recomendações dos autores. Os resultados obtidos para solubilização de fosfato em meio Nbrip demonstraram que 17% apresentaram alta capacidade de solubilização de fosfato inorgânico e 67% alcançaram média capacidade. Os demais estão entre baixa e ausência de solubilização. Dos isolados testados, 75% foram capazes de crescer em meio com atividade de água reduzida 0,919 Aw, a 30°C, o aparecimento de colônias foi observado cinco dias após a inoculação.Os resultados para produção de EPS em temperatura ambiente demonstraram que 4% dos isolados pesquisados atingiram uma ótima produção, seguido de 42% que obtiveram média produção e os demais, 54%. Quanto à capacidade de produção de biofilme em meio TSB em absorbância de 540 nm, 4% dos isolados obtiveram maior freqüência para formação de biofilme, 83% atingiram média produção e 13% dos isolados com baixa frequência de produção. As maiores quantidades para produção de AIA, na presença do precursor L-triptofano foi evidenciada ao final de 72 horas, apesar das diferenças significativas entre os isolados estudados, exceto o isolado sete que foi considerado elevado 51,62194 μg.mL-1 e o isolado seis com a produção mais baixa 14,98113 μg.mL-1, os demais isolados foram classificados altos produtores. Dentre os isolados testados 25% foram capazes de sintetizar citocininas e 83,33% sintetizaram giberelinas comparados ao controle. Todos os isolados, comparados a testemunha, aumentaram em tamanho, sugerindo a ação de um ou dos dois hormônios em questão. Na brotação das gemas inoculadas comparados ao controle sem inoculação da variedade RB72454 de cana-de-açúcar, ao final da avaliação, na presença dos isolados 4, 16, 21 e 24, apenas 25% das gemas haviam brotado e emitido raízes, não diferindo significativamente do controle. A inoculação aumentou significativamente a velocidade de brotação para 83,33% dos isolados, sendo os melhores resultados obtidos para 7, 12, 19 e 20 (94.5, 100, 95 e 94.5% respectivamente) tanto para o número de gemas brotadas como para velocidade de emissão de brotos e raizes.

Abstract Reindeer management in the Fennoscandian area is currently facing challenges such as degradation of winter pastures, which may lead in the most severely affected areas to a concurrent decline in reindeer herd productivity. The use of often expensive supplementary feeding to prevent production losses has increased the demand for studies on the physiological effects of nutritional restriction and supplementary feeding. The knowledge obtained from such studies could be used, for example, to monitor the condition of reindeer in studies assessing herd productivity levels in different pasture conditions and management systems or sustainable use of pasture resources. In this thesis, the effects of season, year, pasture area, body mass, pregnancy and other extrinsic and intrinsic factors on the variation of blood chemical constituents of reindeer were studied in free-ranging animals under natural foraging conditions. The studied blood chemical constituents covered a wide range of parameters related to protein, carbohydrate, lipid and mineral metabolism. The same blood chemical constituents were studied in captive reindeer under defined feeding conditions, allowing an analysis of the effects of dietary protein, energy and mineral intake on the selected blood constituents and their comparison to a conventional measure of the animals' condition, live body mass. According to the results, free-ranging reindeer showed great variation in the concentrations of blood chemical constituents compared to the reference values of domesticated ruminants. Intrinsic factors such as body mass, pregnancy and age had only a minor influence on the variation of the studied parameters, whereas extrinsic factors such as season, year and pasture area, which were characterized by marked changes in environmental and nutritional conditions, explained the majority of the variation. The results obtained from captive animals in defined feeding conditions and from free-ranging animals foraging on natural pastures led to the conclusion that blood total proteins, albumin, urea, creatinine, urea:creatinine ratio, magnesium, inorganic phosphate and, to a lesser extent, globulins and albumin:globulin ratio responded to the changes in feed quality and availability and were the most suitable blood constituents to be used as nutritional biomarkers for reindeer.

Two different research projects were investigated for this thesis, which has consequently been presented in two parts. PART 1 An attempt has been made to improve the high temperature performance of phenol-formaldehyde thermosets by modification of their structure with inorganic phosphate groups. Transesterification of tri-phenyl phosphate with resorcinol has given a resorcinol phosphate resin, which cured with hexamethylenetetramine. A pilot scale batch of this resin has been made and used in high temperature stability studies. Post-cured resorcinol phosphate resin-chrysotile asbestos (30: 70) moulded bars retained 59.5% of their flexural strength after ageing at 523K for 1000 hr in air. Similar phenol-formaldehyde composite bars aged under identical conditions retained only 5.3% of their initial flexural strength. The utility of the resorcinol phosphate resin composite as a commercial product is limited, since the bars had a much lower initial flexural strength (30.85 MNm-2) than the phenol-formaldehyde resin composite bars (108.5 MNm-2). Thermogravimetry and isothermal heating studies have indicated that the degradation of resorcinol phosphate resin was greatly accelerated by chrysotile asbestos, which may catalyse a bond re-organisation process that has been tentatively proposed as a mechanism for the fragmentation of the resin. PART 2 Recently an ionomer dental cement (ASPA), prepared from aqueous poly(acrylic acid) and an ion-leachable aluminosilicate glass, has been developed. The system has been extended by studying other aqueous polymers. The factors influencing the gelation and the properties of the set cements have been examined. Poly(carboxylic acids) with hydrophobic, or no pendant substituents were found to be the most satisfactory polymers for preparing water stable cements. To study the influence of the nature of the cation and polymer structure on the gelation and water stability of ionomer cements, a wide range of metal oxide-polyacid products have been studied. The formation of water stable cements depended markedly on the type of oxide and polyacid employed and appeared to involve factors such as the co-ordination geometry and radius of the cation and the nature of the cation-polyanion bonding in the matrix. A comparison between the water stabilities of ASPA cement and poly(acrylic acid)-CaO, Al2O3, or Al(OH)3 cements has shown that the chemistry of ASPA cement is more complex than has been hitherto reported. Stability constants have been determined for Ca 2+ and Cd 2+ with poly(acrylic acid) and ethyl ethylene-maleic acid copolymer by a potentiometric titration method developed by Gregor and modified by Mandel and Leyte. The stability constants obtained in 1.0M NaNO3 at 298.2 ± 0.2K were: for poly(acrylic acid), with Cat2+, log b1 Ca2+ PAA ~ -3.35 with Cd2+, log Bav Cd2+ PAA = -2.30 for ethylene-maleic acid copolymer, with Cat2+, log b1 CA2+ EMA ~ -4.05 with Cd2+, log Bav Cd2+ EMA = -1.95 The log b1 values probably had little precise meaning, although to a first approximation, log b1 Ca2+ PAA > log b1 Ca2+ EMA The determined stability constants have been used with limited success in predicting the water stabilities of the corresponding metal oxide-polyacid cements.

<p> This thesis focused on the development of comprehensive, rapid and simple methodologies for the analysis of fatty acids by gas chromatography mass spectrometry (GC/MS) and intact lipids by electrospray ionization tandem mass spectrometry (ESIIMS/MS). The methodologies were applied as a tool for functional genomics in the soil bacterium Sinorhizobium meliloti. The effects of inorganic phosphate (Pi)-starvation and acidity on lipid composition were studied. </p> <p> A micro-scale, one-vial method for the analysis of fatty acids as their fatty acid methyl esters by GC/MS was developed. The method required small sample sizes, involved minimum handling and avoided tedious extraction steps, which increased sample throughput. A series of quality controls were included to measure losses due to handling, derivatization efficiencies and the extent of side reactions. The method was suitable for the analysis of sensitive bacterial fatty acids such as cyclopropane fatty acids. </p> <p> A shotgun lipidomics approach was developed for the analysis of intact lipids by ESIIMS/MS. Fatty acid distributions were obtained for eight lipid classes and up to 58 individual lipids were identified in crude lipid extracts without sample cleanup or chromatography. For the first time, fatty acid distributions were provided for non-phosphorus containing lipids using shotgun lipidomics. Fatty acid distributions within lipid classes suggested that phospholipids and 1,2-diacylglyceryl-3-O-4'-(N,N,N-trimethyl)-homoserine lipids (TMHSs) were both synthesized from phosphatidic acid while sulfoquinovosyldiacylglycerol (SLs) had a different biosynthetic origin. </p> <p> The methodologies were applied to study knockout mutants of five genes thought to participate in lipid metabolism in S. meliloti. It was demonstrated that: (1) cfa2 gene coded for the main cyclopropane fatty acyl synthase; (2) the plsC gene coded for a fatty acy 1 transferase specific for C 16 fatty acids in the sn-2 position of phospholipids; (3) a metabolic phenotype was revealed for knockout mutants of dme and tme genes (DME and TME, malic enzymes) when succinate was the carbon source. </p> / Thesis / Doctor of Philosophy (PhD)

No description available.

A regulação da expressão gênica é vital para todos os organismos se adaptarem rapidamente às mudanças ambientais. Estes mecanismos adaptativos são altamente complexos e a maioria deles não está completamente esclarecida. O fosfato inorgânico (Pi), um nutriente essencial para todos os organismos, é requerido em importantes processos celulares como a biosíntese de ácidos nucléicos e a sinalização metabólica. O sistema de aquisição de Pi no fungo filamentoso Neurospora crassa inclui pelo menos quatro genes regulatórios: nuc-2, preg, pgov e nuc-1. Em condições limitantes de Pi, NUC- 2, uma proteína com domínio de repetição de anquirina, inibe o funcionamento do complexo PREG-PGOV, ativando assim o fator de transcrição NUC-1 e a expressão de genes envolvidos na captação de fosfato, como fosfatases, fosfato permeases e nucleases. Visando entender a funcionalidade do gene nuc-2 na regulação da expressão gênica em resposta aos níveis de Pi exógeno, foram construídas duas bibliotecas de subtração de cDNA entre as linhagens selvagem St.L.74A e nuc-2A de N. crassa, cultivadas em Pilimitante. Obtivemos 52 transcritos induzidos e 16 reprimidos pela proteína NUC-2. A categorização funcional destas sequências revelou genes envolvidos em diversos processos celulares, como transporte, regulação transcricional, transdução de sinal, metabolismo, síntese protéica e desenvolvimento. Entre os genes modulados negativamente pela proteína NUC-2, foi identificado um gene que codifica a proteína MAK-2 (mitogen-activated protein kinase-2), envolvida em vias de sinalização intracelular. O papel funcional deste gene no monitoramento do Pi extracelular foi avaliado por microarranjos de oligonucleotídeos, comparando as linhagens selvagem e mutante mak-2, cultivadas em baixa concentração de Pi. Foram identificados 4.214 genes regulados pela proteína MAK- 2, dentre eles a ciclina codificada pelo gene preg. Além disto, genes regulados em função da concentração de Pi foram identificados, mostrando o envolvimento de 3.174 transcritos. Os resultados obtidos neste trabalho revelam novos aspectos moleculares envolvidos na adaptação à disponibilidade de Pi extracelular, sugerindo que o gene mak-2 constitui um novo componente da via de sinalização e monitoramento de fosfato em N. crassa. / Gene expression regulation is crucial for all organisms to rapidly adapt to environmental changes. These adaptive mechanisms are highly complex and most of them have not been completely elucidated. The inorganic phosphate (Pi), an essential nutrient for all organisms, is required for important cellular processes, such as nucleic acids biosynthesis and metabolic signaling. The Pi acquisition system in the filamentous fungus Neurospora crassa includes at least four regulatory genes: nuc-2, preg, pgov and nuc-1. Under limiting Pi conditions, NUC-2, an ankyrin-like repeat protein, inhibits the functioning of the PREG-PGOV complex, allowing the activation of the transcription factor NUC-1 and the expression of genes involved in phosphate acquisition, such as phosphatases, phosphate permeases and nucleases. Aiming at a better comprehension of the nuc-2 functionality in gene expression regulation in response to exogenous Pi levels, two cDNA subtraction libraries were constructed comparing N. crassa wild type St.L.74A and nuc-2A strains, grown under Pi starvation. We obtained 52 NUC-2 up- and 16 downregulated genes. Functional categorization of these sequences revealed genes involved in several cellular processes, such as cellular transport, transcriptional regulation, metabolism, protein synthesis and development. Among the NUC-2 negatively modulated genes, we identified the MAK-2 (mitogen-activated protein kinase-2) protein coding gene, involved in the intracellular signaling pathway. The functional role of this gene in the extracellular Pi sensing was evaluated by oligonucleotide microarrays, comparing wild type and mak-2 strains responses under Pi starvation. We identified 4.214 MAK-2 regulated genes, among them the cyclin coding gene, preg. Furthermore, 3.174 genes regulated in response to Pi levels were identified. In a nutshell, the results obtained in this work reveal novel molecular aspects of the adaptation to extracellular Pi availability, suggesting that the mak-2 gene constitutes a novel component of the N. crassa phosphate sensing and signaling pathway.

A regulação da expressão gênica é vital para todos os organismos se adaptarem rapidamente às mudanças ambientais. Estes mecanismos adaptativos são altamente complexos e a maioria deles não está completamente esclarecida. O fosfato inorgânico (Pi), um nutriente essencial para todos os organismos, é requerido em importantes processos celulares como a biosíntese de ácidos nucléicos e a sinalização metabólica. O sistema de aquisição de Pi no fungo filamentoso Neurospora crassa inclui pelo menos quatro genes regulatórios: nuc-2, preg, pgov e nuc-1. Em condições limitantes de Pi, NUC- 2, uma proteína com domínio de repetição de anquirina, inibe o funcionamento do complexo PREG-PGOV, ativando assim o fator de transcrição NUC-1 e a expressão de genes envolvidos na captação de fosfato, como fosfatases, fosfato permeases e nucleases. Visando entender a funcionalidade do gene nuc-2 na regulação da expressão gênica em resposta aos níveis de Pi exógeno, foram construídas duas bibliotecas de subtração de cDNA entre as linhagens selvagem St.L.74A e nuc-2A de N. crassa, cultivadas em Pilimitante. Obtivemos 52 transcritos induzidos e 16 reprimidos pela proteína NUC-2. A categorização funcional destas sequências revelou genes envolvidos em diversos processos celulares, como transporte, regulação transcricional, transdução de sinal, metabolismo, síntese protéica e desenvolvimento. Entre os genes modulados negativamente pela proteína NUC-2, foi identificado um gene que codifica a proteína MAK-2 (mitogen-activated protein kinase-2), envolvida em vias de sinalização intracelular. O papel funcional deste gene no monitoramento do Pi extracelular foi avaliado por microarranjos de oligonucleotídeos, comparando as linhagens selvagem e mutante mak-2, cultivadas em baixa concentração de Pi. Foram identificados 4.214 genes regulados pela proteína MAK- 2, dentre eles a ciclina codificada pelo gene preg. Além disto, genes regulados em função da concentração de Pi foram identificados, mostrando o envolvimento de 3.174 transcritos. Os resultados obtidos neste trabalho revelam novos aspectos moleculares envolvidos na adaptação à disponibilidade de Pi extracelular, sugerindo que o gene mak-2 constitui um novo componente da via de sinalização e monitoramento de fosfato em N. crassa. / Gene expression regulation is crucial for all organisms to rapidly adapt to environmental changes. These adaptive mechanisms are highly complex and most of them have not been completely elucidated. The inorganic phosphate (Pi), an essential nutrient for all organisms, is required for important cellular processes, such as nucleic acids biosynthesis and metabolic signaling. The Pi acquisition system in the filamentous fungus Neurospora crassa includes at least four regulatory genes: nuc-2, preg, pgov and nuc-1. Under limiting Pi conditions, NUC-2, an ankyrin-like repeat protein, inhibits the functioning of the PREG-PGOV complex, allowing the activation of the transcription factor NUC-1 and the expression of genes involved in phosphate acquisition, such as phosphatases, phosphate permeases and nucleases. Aiming at a better comprehension of the nuc-2 functionality in gene expression regulation in response to exogenous Pi levels, two cDNA subtraction libraries were constructed comparing N. crassa wild type St.L.74A and nuc-2A strains, grown under Pi starvation. We obtained 52 NUC-2 up- and 16 downregulated genes. Functional categorization of these sequences revealed genes involved in several cellular processes, such as cellular transport, transcriptional regulation, metabolism, protein synthesis and development. Among the NUC-2 negatively modulated genes, we identified the MAK-2 (mitogen-activated protein kinase-2) protein coding gene, involved in the intracellular signaling pathway. The functional role of this gene in the extracellular Pi sensing was evaluated by oligonucleotide microarrays, comparing wild type and mak-2 strains responses under Pi starvation. We identified 4.214 MAK-2 regulated genes, among them the cyclin coding gene, preg. Furthermore, 3.174 genes regulated in response to Pi levels were identified. In a nutshell, the results obtained in this work reveal novel molecular aspects of the adaptation to extracellular Pi availability, suggesting that the mak-2 gene constitutes a novel component of the N. crassa phosphate sensing and signaling pathway.

The synergistic effect of nitric oxide toward dephosphorylation reactions involving phosphate esters was the subject of investigation in this research. Sodium nitroprusside under UV irradiations at 254nm, 365nm and white light was utilized as nitric oxide donor in solutions. The effects of cobalt trimethylenediamine and nitroprusside towards dephosphorylation of nitrophenylphosphate and pyrophosphate which were modeled as organophosphate ester substrates were also investigated. The activated substrate models showed more rate enhancement than the unactivated models in all cases. The direct interaction of nitric oxide with the phosphorus centre is presumed to be the reason for enhanced hydrolysis. This study demonstrates the possible role of nitric oxide in decontamination reactions of poorly biodegradable phosphate esters in the biosphere. / Chemistry / M. Sc. (Chemistry)