Phlebotomine sand flies (Diptera, Psychodidae) are small blood sucking insects which are only proven vectors of neglected tropical disease called leishmaniasis. Sand flies of the genus Phlebotomus act as vectors in the Old World and those of genus Lutzomyia are vectors in the New World. However, not all of them are capable of transmitting the disease. It is therefore crutial to conclusively determinate the species and have up-to-date knowledge of their natural occurence. Routine identification based on morphological characters is challenging due to intraspecific variability of these or their possible damage during the capture and preparation. In adition, correct assessment of distinctive cahracters, especially for females, is difficult and requires certain expertise. Thus, approaches of molecular taxonomy have been recently increasingly used for sand flies species determination. This thesis presents usage of DNA sequencing and MALDI-TOF protein profiling for routine determination of sand flies caught in southeastern Europe and adjacent regions, where we have lack of information of present sand flies species. Another part of this thesis focus on closer examination of relations between selected closely related species within species complexes. Key words: Phlebotomus, molacular identification, DNA...

Les patrons de diversité caractérisent la structure de la diversité des communautés, c'est-à-dire sa valeur, sa distribution et son changement dans l'espace et le temps. Leur étude peut amener des informations importantes sur les processus écologiques qui en sont à l'origine. Cependant de nombreuses hypothèses de travail sont faites lors de leur analyse. L'idée générale de cette thèse est qu'en remettant en cause ces hypothèses, un certain nombre de développements liés aux indices de diversité et aux modèles nuls deviennent possibles et permettent de mieux comprendre les processus écologiques à l'origine des patrons de diversité fonctionnelle ou phylogénétique. Le premier chapitre est consacré à l'étude des patrons de diversité fonctionnelle des communautés végétales alpines à de multiples échelles spatiales et organisationnelles. Le second chapitre s'intéresse aux perspectives méthodologiques amenés par les nombres de Hill. Dans le dernier chapitre, on s'intéresse aux enjeux méthodologiques d'un nouveau type de données de communautés : l'ADN environnemental. / Patterns of community diversity refers to the structure of diversity, i.e. its quantification, its distribution and its turnover in space and time. Its study is likely to shed the light on the assembly rules that determined the structure of communities. However, numerous ecological assumptions are often made when studying diversity patterns. What motivated the work was the perspective that by relaxing these assumptions, a number of developments linked to diversity indices and null models are possible and can help to understand the impact of multiple ecological processes on phylogenetic and functional diversity patterns. In a first part we studied the pattern of functional diversity of alpine plant communities as a function of spatial and organizational scales. In the second part, we studied the methodological perspectives brought by the Hill numbers. In a third part, we addressed the main methodological issues of a new type of community data: environmental DNA.

Le cadmium (Cd) est un élément toxique. Les activités humaines ont contaminé un large éventail de sols agricoles. L'exposition de l'homme au Cd se fait majoritairement par voie alimentaire, notamment à travers les aliments de base tels que les céréales. Le blé dur accumule naturellement plus de Cd dans ses grains que les autres céréales. Une fraction significative de la production française de blé dur dépasse la limite réglementaire européenne fixée pour le Cd. Il est donc nécessaire de réduire l'accumulation de Cd dans les grains de blé dur. Cette thèse portant sur l'écophysiologie de l'allocation du Cd aux grains chez le blé dur a pour ambition d'aider au développement de stratégies agronomiques visant à réduire le niveau de contamination en Cd du blé dur et de ses dérivés.Dans un premier temps, nous avons étudié la relation entre la structure de la biomasse aérienne et l'allocation de Cd aux grains. Nous avons fait l'hypothèse que la répartition de la biomasse aérienne entre pailles et grains était un facteur déterminant de l'allocation du Cd aux grains. Huit cultivars Français de blé dur - de hauteur de paille contrastée - ont été cultivés en présence de Cd. Comme prévu, le principal facteur expliquant la différence d'accumulation de Cd dans le grain était la structure de la biomasse aérienne. Les cultivars allouant une plus grande proportion de leur biomasse aérienne aux pailles - autrement dit les cultivars à longue tige - avaient tendance à accumuler moins de Cd dans leurs grains, car les tiges et les feuilles sont des puits de Cd en concurrence avec les grains lors de leur remplissage.Les minéraux importés dans les grains proviennent soit de leur absorption directe par la racine après l'anthèse, soit de leur remobilisation depuis des réserves constituées avant l'anthèse. La deuxième partie de ce travail a été consacrée à déterminer l'importance quantitative de ces deux « sources » pour le Cd chez le blé dur, et de préciser comment leur contribution relative varie entre cultivars et avec le niveau d'azote (N). Le traçage isotopique a été utilisé pour suivre le flux de Cd absorbé après l'anthèse. L'impact du niveau d'azote a été testé en privant la moitié des plantes de N après l'anthèse, sur deux cultivars montrant une capacité contrastée à accumuler le Cd dans leurs grains. La contribution de la remobilisation a été estimé à 50%, ce qui signifie que la moitié du Cd accumulé dans les grains provenait du Cd prélevé après l'anthèse. Le Cd a été remobilisé à partir des tiges, peut-être des racines, mais pas à partir des feuilles. La contribution de la remobilisation n'a pas varié entre les deux cultivars, de sorte qu'aucune relation entre la « source » de Cd et son niveau d'accumulation dans le grain n'a été mise en évidence. La privation d'azote en phase de remplissage a stimulé la remobilisation de N sans affecter celle de Cd, ce qui suggère que la remobilisation de Cd est un processus indépendant de la sénescence.En troisième lieu, nous avons examiné comment les caractéristiques d'allocation de Cd aux grains étaient modulées par le niveau d'exposition au Cd. [...]Enfin, nous nous sommes intéressés à la localisation de Cd dans le grain. [...] Ce travail a fourni la première carte de localisation de Cd dans un grain de blé dur. La distribution de Cd s'est caractérisée par une forte accumulation de Cd dans le sillon et par une dissémination dans l'endosperme amylacé plus prononcée que celle de Fe et Zn. / Cadmium (Cd) is a toxic element. Human activities have contaminated a wide range of agricultural soils. Most of Cd entering human bodies is through the dietary intake, and especially through staple food like cereals. Durum wheat naturally accumulates more Cd in its grains than other cereals. A significant fraction of the French durum wheat production has been found to exceed the European regulatory limit set for Cd. There is thus a need to reduce the accumulation of Cd in durum wheat grains. This thesis is dedicated to a better understanding of the ecophysiology of Cd allocation to the grains in durum wheat, with the ambition of helping to find agronomic strategies to reduce the Cd contamination level of durum wheat products.In first, we investigated the relationship between the aboveground partitioning of Cd and the shoot allometry. We hypothesized that the partitioning of shoot biomass between grains and straws is a driver of the allocation of Cd to the grains. Eight French durum wheat cultivars differing in their stem height were grown in presence of Cd. As expected, the main factor explaining the difference in their grain Cd was the shoot biomass partitioning. Cultivars allocating a higher proportion of their aerial biomass to the straws, i.e. long-stem cultivars, tended to accumulate less Cd in their grains because stems and leaves are sinks for Cd in competition with developing grains.Minerals imported into cereal grains originate from either direct post-anthesis root uptake or from the remobilization of pre-anthesis stores. The second part of this work was dedicated to determine the quantitative importance of these two pathways for Cd in durum wheat, and how their relative contribution vary between cultivars and with the level of nitrogen (N) supply. Stable isotopic labelling was used to trace the flux of Cd taken up post-anthesis. The impact of N supply was tested by depriving half of the plants of N after anthesis, in two cultivars showing a contrasted ability to accumulate Cd in their grains. The contribution of Cd remobilization was around 50%, which means that half of Cd in grains originated from Cd taken up pre-anthesis. Cd was remobilized from stems, possibly from roots, but not from leaves. The contribution of remobilization did not vary between the two cultivars so that no relationship between the pathway and the level of accumulation of Cd in grain was evidenced. Post-anthesis N deprivation triggered the remobilization of N without affecting that of Cd, which suggests that Cd remobilization is a senescent-independent process.In third, we investigated how the characteristics of Cd allocation to the grains was affected by the level of Cd exposure. [...]In last, we focused on how Cd was distributed within durum wheat grains. [...] This work provided the first map of Cd localization in durum wheat grains. Cd distribution was characterized by a strong accumulation of Cd in the crease and by a non-negligible dissemination in the starchy endosperm, as compared to Fe and Zn.

Les invasions biologiques sont considérées comme étant une cause majeure de changement des écosystèmes. Les impacts écologiques des espèces invasives pourraient être modulés par la variabilité intraspécifique des traits biologiques et écologiques entre et au sein de leurs populations. Cette thèse a révélé, à différentes échelles spatiales, la présence de variabilités phénotypiques fortes chez deux espèces invasives, Lepomis gibbosus et Procambarus clarkii. Il est apparu que les réponses phénotypiques des individus aux conditions environnementales pourraient être complexes, révélant notamment la contre productivité des méthodes de gestion utilisées pour contrôler les populations invasives et l'importance de l'histoire de colonisation des populations dans les relations phénotype-environnement. Des expérimentations ont également démontré comment la variabilité intraspécifique pourrait moduler les effets des espèces invasives sur la structure des communautés et le fonctionnement des écosystèmes. Ces résultats soutiennent l'idée qu'intégrer la variabilité intraspécifique dans un contexte d'invasion biologique est indispensable afin de mieux évaluer les impacts et adapter les méthodes de gestion aux caractéristiques des populations invasifs. / While biological invasions are widely recognized as a major cause of ecosystem changes, the ecological impacts of invasive species could be modulated by intraspecific variability in ecological traits occurring between and within populations. The present work demonstrated, at different geographical scales, the existence of a strong phenotypic variability within two freshwater invaders, Lepomis gibbosus and Procambarus clarkii. In addition, phenotypic responses to environmental conditions was demonstrated to be complex, revealing notably that the methods used to control invasive populations can be counter-productive and that the colonization history of invasive populations is an important driver of phenotype-environment relationships. Experimental approaches also demonstrated that intraspecific variability modulated the intensity of the ecological impacts of invasive species on community structure and ecosystem functioning. These findings strongly support the idea that integrating intraspecific variability in the context of biological invasions is essential to better appreciate their impacts on recipient ecosystem and ultimately improve the efficient of management methods based on the characteristics of invasive populations

Plants and herbivores influence each other for more than million years. Most studies are focused on interspecific variability in herbivory intensity, but little i known about intraspecific variability and what controls it. Environmental conditions can determine intraspecific variation. Goal of this thesis is to examine importance of environmental conditions and interspecific variation for invertebrate herbivory preferences. Plant material that was used in experiments comes from several species from subfamily Carduoideae. Preferences of invertebrate herbivores are tested in food-choice experiments. Plastic arenas are made for these experiments, in which leaves are put in small tubes that are placed along the periphery. After herbivores are placed in to arena, arena is covered by net to ensure that herbivores can't escape. Plant material for experiments was grown in experimental garden and was also brought from field. Plants from garden differ in productivity of soil and water regime. In experiments with field material, plant leaves were collected from eight localities, four fields and four grasslands. Leaves were scanted before and after each experiment. Scans were processed and the amount of consumed leaf tissue was determined. For plant characteristics I measured plant functional traits, specific...

Drought is one of the most important stress factors affecting plants. Increasing drought resistance via plant breeding is currently the main approach for improvement of plant productivity and reduction of water usage. Plant breeders and scientists search for reliable and easy methods of the determination of drought sensitivity in different genotypes. A precise knowledge about processes underlying plant stress response and defence against limited water availability is necessary for this. The aim of this study was a detailed analysis of photosynthetic processes and changes in leaf proteome (again aimed especially at proteins involved in photosynthesis) during drought stress. This analysis was a part of a complex project focused on the possible causes of genetic variability and drought resistance in agronomically important crops. Another goal was to analyse whether the measurement of selected photosynthetic parameters can be used for the determination of drought sensitivity per se and/or for the prediction of the response of hybrids based on known behaviour of their parents. Young plants of maize inbred lines and their hybrids were used as a model for this analysis, which was made under conditions of moderate and more severe drought. Two inbred lines which were (together with their F1 hybrids) used...

La variabilité intraspécifique fait partie intégrante de la réponse à court et à long terme des organismes vivants aux fluctuations environnementales. Cette variabilité, exprimée au travers de différents traits des individus, peut potentiellement influencer la sensibilité des espèces à une contamination chimique. La variabilité intraspécifique n'est pas, à l'heure actuelle, prise en compte en évaluation des risques écotoxicologiques, alors même qu'elle pourrait en biaiser les résultats. Pour examiner cette hypothèse, l'importance de la variabilité intraspécifique dans la réponse au cuivre (Cu) a été quantifiée en conditions contrôlées pour trois espèces de macrophytes aquatiques, Lemna minor, Myriophyllum spicatum et Ceratophyllum demersum. Les variations entre génotypes de chacune de ces 3 espèces ont été comparées à la variabilité interspécifique. Les résultats ont mis en évidence une variabilité génotypique significative, dont l'importance dépend de l'espèce considérée. En effet, L. minor a montré une faible variabilité, au contraire de M. spicatum dont la variabilité de l'inhibition de croissance par le Cu est supérieure aux différences interspécifiques. Afin de préciser l'étendue et les mécanismes de la variabilité génotypique chez M. spicatum, d'autres expériences impliquant des mesures de traits d'histoire de vie ont été réalisées sur 7 génotypes exposés au Cu. Les résultats ont montré que certains génotypes étaient jusqu'à 8 fois plus sensibles au Cu à des concentrations allant de 0.15 à 0.5 mg/L). Ces différences de sensibilité sont en partie expliquées par les traits mesurés, mais des mesures physiologiques et/ou des approches en transcriptomique devraient pouvoir expliquer de façon plus consistante la source de ces différences de sensibilité. Enfin, 3 expériences faisant varier respectivement la teneur en nutriments, l'intensité lumineuse et la préexposition au Cu, ont démontré que la plasticité phénotypique joue un rôle majeur dans la sensibilité au Cu chez L. minor. En effet, l'affaiblissement des individus, résultant des conditions environnementales défavorables, peut conduire au doublement de la sensibilité de L. minor au Cu. [...] / Intraspecific variability plays a pivotal role in short and long term responses of species to environmental fluctuations. This variability, expressed through different traits of individuals, can potentially influence species sensitivity to chemical contamination. This intraspecific variability is currently not taken into account in ecotoxicological risk assessment, whereas it can mislead its results. To examine this hypothesis, the importance of intraspecific variability in the response to copper (Cu) was quantified in controlled conditions for three aquatic macrophyte species, Lemna minor, Myriophyllum spicatum and Ceratophyllum demersum. Variations among genotypes of each of these 3 species were compared to interspecific variability. Results have highlighted a significant genotypic variability, whose importance depends on the species considered. Indeed, L. minor demonstrated a low variability, contrarily to M. spicatum whose variability in growth inhibition by Cu was higher than interspecific differences. In order to specify the extent and the mechanisms of genotypic variability in M. spicatum, other experiments involving measurements of life-history traits have been conducted on 7 genotypes exposed to Cu. Results showed that some genotypes were up to eightfold more sensitive to Cu than others (at concentrations ranging between 0.15 and 0.5 mg/L). These differences in sensitivity were partly explained by the traits measured, but physiological or transcriptomic endpoints may explain more precisely the source of these differences in sensitivity. Finally, 3 experiments with fluctuations in nutrient concentrations, light intensity and Cu pre-exposure have demonstrated that phenotypic plasticity plays an important role in L. minor sensitivity to Cu. Indeed, the weakening of individuals, as a result of unfavorable environmental conditions, can lead to a two-fold increase in sensitivity to Cu.[...]

The study is focused on comparative ecology of three closely related species from Myosotis palustris group. Importance of various functional traits of individual species was evaluated experimentally in the greenhouse (germination experiments), in the pot experiment and in the reciprocal transplant field experiment. Germination, production of clonal structures and response to various environmental conditions (competition, moisture conditions, etc.) were studied. The experimental data are supplemented with an analysis of phytosociological relationships of the studied species.

Abordagens funcionais e filogenéticas têm sido amplamente utilizadas no estudo de ecologia de comunidades e têm propiciado um melhor entendimento de como atributos funcionais e sua evolução influenciam padrões ecológicos observados atualmente na natureza. A incorporação da variabilidade intraespecífica em estudos recentes de ecologia de comunidades vegetais tem demonstrado que, apesar de a variabilidade intraespecífica de um atributo ser normalmente menor do que sua variabilidade interespecífica, estudos que consideram a variabilidade intraespecífica inferem mecanismos de organização de comunidades com mais acurácia. Além disso, abordagens analíticas que incluem a variabilidade intraespecífica em estudos de comunidades possibilitam integrar as escalas de populações e comunidades em ecologia. Abordagens filogenéticas recentes permitem a avaliação da interação entre composição filogenética de bancos regionais de espécies e a estrutura filogenética local de comunidades, o que permite a inferência de processos históricos e ecológicos que estruturam comunidades atuais. O objetivo geral desta tese foi avaliar padrões e inferir processos de organização de comunidades de plantas lenhosas da escala local à regional. Para isso, utilizei abordagens baseadas em atributos funcionais para avaliar o nicho de indivíduos (capítulo 2) e das espécies (capítulo 2 e 3) e abordagens filogenéticas para avaliar como a evolução influencia a similaridade funcional entre as espécies (capítulo 3), a formação de bancos de espécies locais (capítulo 3) e regionais (capítulo 4) e a estruturação de comunidades locais (capítulo 4). No capítulo 2, avaliei qual a importância relativa da substituição (turnover) de espécies e da variabilidade intraespecífica nas respostas médias e de dispersão de área foliar específica no nível de comunidade a um gradiente de abertura de dossel em uma metacomunidade de árvores juvenis. Nesse capítulo, concluí que a variabilidade intraespecífica é fundamental para a organização de comunidades lenhosas em florestas e arbustais, pois a área foliar específica dentro da mesma espécie varia conforme o ambiente e o contexto local de espécies interatoras. Essa plasticidade permite o estabelecimento de espécies em uma porção maior do gradiente de abertura do dossel. No capítulo 3, avaliei se espécies ocorrentes tanto na floresta quanto no campo diferem de espécies restritas à floresta ou ao campo quanto a resposta de seus atributos a espécies coocorrentes e ao gradiente ambiental. Concluí que uma ação combinada entre área foliar específica, espessura foliar e densidade de folhagem ajuda a explicar a organização de comunidades de plantas lenhosas em ecótonos floresta-campo. A plasticidade nesses atributos permite a colonização do campo por espécies que também ocorrem na floresta. No capítulo 4, avaliei se há associação entre a estrutura filogenética local (agrupamento ou repulsão) de comunidades de árvores e a distribuição geográfica de grandes linhagens de angiospermas no Neotrópico e Afrotrópico. A conclusão foi que diferenças regionais de composição filogenética entre o Neotrópico e o Afrotrópico são provavelmente um resultado de taxas diferenciais de especiação e extinção que seguiram a separação de Gondwana e atualmente influenciam a estrutura filogenética local de comunidades de árvores de florestas pluviais nos dois reinos. / Functional and phylogenetic approaches have been widely used in community ecology studies and have provided a better understanding of how functional traits and their evolution influence ecological patterns that are currently observed in nature. The incorporation of intraspecific variability in recent plant community ecology studies have demonstrated that, despite intraspecific variability of a given trait extent be usually lower than its interspecific variability, studies that account for intraspecific variability more accurately infer mechanisms of community assembly. Moreover, analytical approaches that incorporate intraspecific variability in community ecology studies enable integrating population and community scales in ecology. Recent phylogenetic approaches permit evaluating the interaction between the phylogenetic composition of regional species pools and local phylogenetic structure of communities, which enables the inference of historical and ecological processes structuring current communities. The general aim of this dissertation was to evaluate and infer assembly processes of woody plant communities from local to regional scales. For this, I used trait-based approaches to assess the niche of individuals (chapter 2) and species (chapter 2 and 3) and community phylogenetics approaches to evaluate how evolution influences the trait similarity between species (chapter 3), the formation of local and regional species pools (chapter 3 and 4, respectively) and the structuring of local communities (chapter 4). In chapter 2, I evaluated what is the relative importance of species turnover and intraspecific variability to the variation in trait mean and spread responses of specific leaf area at the community level across a canopy openness gradient in a tree juvenile metacommunity. In this chapter, I conclude that intraspecific variability is essential to woody community assembly in forests and shrublands, since specific leaf area within the same species varies according to the environment and local context of interacting species. This plasticity permits species establishment in a wider portion of the canopy openness gradient. In chapter 3, I evaluated whether species both in forest and grassland differ from species restricted to either forest or grassland regarding their trait-based responses to co-occurring species and environmental gradient. I concluded that an interplay between specific leaf area, leaf thickness and foliage density help explaining the assembly of woody plant communities in forest-grassland ecotones. The plasticity in these traits enables the colonization of the grassland by species that also occur in the forest. In chapter 4, I evaluated whether there is association between local phylogenetic structure (clustering or overdispersion) of tree communities and geographical distribution of major angiosperm lineages in the Neotropics and Afrotropics. In this chapter, I concluded that regional differences in phylogenetic composition between the Neotropics and Afrotropics are likely an outcome of differential rates of speciation and extinction following the breakup of Gondwana and currently influence local phylogenetic structure of rainforest tree communities in both realms.

Abordagens funcionais e filogenéticas têm sido amplamente utilizadas no estudo de ecologia de comunidades e têm propiciado um melhor entendimento de como atributos funcionais e sua evolução influenciam padrões ecológicos observados atualmente na natureza. A incorporação da variabilidade intraespecífica em estudos recentes de ecologia de comunidades vegetais tem demonstrado que, apesar de a variabilidade intraespecífica de um atributo ser normalmente menor do que sua variabilidade interespecífica, estudos que consideram a variabilidade intraespecífica inferem mecanismos de organização de comunidades com mais acurácia. Além disso, abordagens analíticas que incluem a variabilidade intraespecífica em estudos de comunidades possibilitam integrar as escalas de populações e comunidades em ecologia. Abordagens filogenéticas recentes permitem a avaliação da interação entre composição filogenética de bancos regionais de espécies e a estrutura filogenética local de comunidades, o que permite a inferência de processos históricos e ecológicos que estruturam comunidades atuais. O objetivo geral desta tese foi avaliar padrões e inferir processos de organização de comunidades de plantas lenhosas da escala local à regional. Para isso, utilizei abordagens baseadas em atributos funcionais para avaliar o nicho de indivíduos (capítulo 2) e das espécies (capítulo 2 e 3) e abordagens filogenéticas para avaliar como a evolução influencia a similaridade funcional entre as espécies (capítulo 3), a formação de bancos de espécies locais (capítulo 3) e regionais (capítulo 4) e a estruturação de comunidades locais (capítulo 4). No capítulo 2, avaliei qual a importância relativa da substituição (turnover) de espécies e da variabilidade intraespecífica nas respostas médias e de dispersão de área foliar específica no nível de comunidade a um gradiente de abertura de dossel em uma metacomunidade de árvores juvenis. Nesse capítulo, concluí que a variabilidade intraespecífica é fundamental para a organização de comunidades lenhosas em florestas e arbustais, pois a área foliar específica dentro da mesma espécie varia conforme o ambiente e o contexto local de espécies interatoras. Essa plasticidade permite o estabelecimento de espécies em uma porção maior do gradiente de abertura do dossel. No capítulo 3, avaliei se espécies ocorrentes tanto na floresta quanto no campo diferem de espécies restritas à floresta ou ao campo quanto a resposta de seus atributos a espécies coocorrentes e ao gradiente ambiental. Concluí que uma ação combinada entre área foliar específica, espessura foliar e densidade de folhagem ajuda a explicar a organização de comunidades de plantas lenhosas em ecótonos floresta-campo. A plasticidade nesses atributos permite a colonização do campo por espécies que também ocorrem na floresta. No capítulo 4, avaliei se há associação entre a estrutura filogenética local (agrupamento ou repulsão) de comunidades de árvores e a distribuição geográfica de grandes linhagens de angiospermas no Neotrópico e Afrotrópico. A conclusão foi que diferenças regionais de composição filogenética entre o Neotrópico e o Afrotrópico são provavelmente um resultado de taxas diferenciais de especiação e extinção que seguiram a separação de Gondwana e atualmente influenciam a estrutura filogenética local de comunidades de árvores de florestas pluviais nos dois reinos. / Functional and phylogenetic approaches have been widely used in community ecology studies and have provided a better understanding of how functional traits and their evolution influence ecological patterns that are currently observed in nature. The incorporation of intraspecific variability in recent plant community ecology studies have demonstrated that, despite intraspecific variability of a given trait extent be usually lower than its interspecific variability, studies that account for intraspecific variability more accurately infer mechanisms of community assembly. Moreover, analytical approaches that incorporate intraspecific variability in community ecology studies enable integrating population and community scales in ecology. Recent phylogenetic approaches permit evaluating the interaction between the phylogenetic composition of regional species pools and local phylogenetic structure of communities, which enables the inference of historical and ecological processes structuring current communities. The general aim of this dissertation was to evaluate and infer assembly processes of woody plant communities from local to regional scales. For this, I used trait-based approaches to assess the niche of individuals (chapter 2) and species (chapter 2 and 3) and community phylogenetics approaches to evaluate how evolution influences the trait similarity between species (chapter 3), the formation of local and regional species pools (chapter 3 and 4, respectively) and the structuring of local communities (chapter 4). In chapter 2, I evaluated what is the relative importance of species turnover and intraspecific variability to the variation in trait mean and spread responses of specific leaf area at the community level across a canopy openness gradient in a tree juvenile metacommunity. In this chapter, I conclude that intraspecific variability is essential to woody community assembly in forests and shrublands, since specific leaf area within the same species varies according to the environment and local context of interacting species. This plasticity permits species establishment in a wider portion of the canopy openness gradient. In chapter 3, I evaluated whether species both in forest and grassland differ from species restricted to either forest or grassland regarding their trait-based responses to co-occurring species and environmental gradient. I concluded that an interplay between specific leaf area, leaf thickness and foliage density help explaining the assembly of woody plant communities in forest-grassland ecotones. The plasticity in these traits enables the colonization of the grassland by species that also occur in the forest. In chapter 4, I evaluated whether there is association between local phylogenetic structure (clustering or overdispersion) of tree communities and geographical distribution of major angiosperm lineages in the Neotropics and Afrotropics. In this chapter, I concluded that regional differences in phylogenetic composition between the Neotropics and Afrotropics are likely an outcome of differential rates of speciation and extinction following the breakup of Gondwana and currently influence local phylogenetic structure of rainforest tree communities in both realms.