Attenuation and damping in elastography are naturally of great interest as the presence of these effects in biological tissue goes without question and therefore must be addressed if quantitative assessment of tissue elastic properties is to be achieved. Additionally, given the change in the tissue structure present in the diseases that elastographic imaging seeks to detect and diagnose, there is every reason to expect that the resulting lesions will also exhibit a change in their attenuation behaviour, indicating diagnostic value to any description of the damping property distribution elastographic methods are able to provide. This thesis will present the unique contribution of the development of several Elastographic models for MR based reconstructions of soft tissue. A method for the reconstruction of both Viscoelastic and Rayleigh damping based damped elastic properties has been developed for use with MR detected time-harmonic motion data and has been shown to lead to reasonable results in both homogeneous and heterogeneous phantoms of varying material types. A poro-elastic modelling is thought to provide a more accurate description of tissue structure by accounting for, in part, the complex interactions between the solid and fluid phases present in vivo. The foundation for a poro-elastic material behaviour will be explored and presented to support the premise. A meaningful mapping of the orthotropic shear moduli distributions in three directions has demonstrated enough evidence that the orthotropic MRE can be a feasible technique to determine orthotropic elasticity parameters of a biological tissue, noninvasively. The orthotropic achievements throughout this project can be useful for future clinical cancer diagnostics by augmenting the information obtained from the orthotropic MRE reconstructions between normal tissue and tumours.

The introduction of trout has been implicated in the declines in native fish fauna in New Zealand and worldwide. Since the introduction of brown (Salmo trutta) and rainbow (Oncorhynchus mykiss) trout to New Zealand in 1867, their distribution has spread and they have been implicated in the fragmentation of native fish distributions, particularly native non-migratory galaxiids. However, in the Upper Waimakariri basin the co-occurrence of trout and galaxiid populations is relatively common, even in streams where trout reach sizes known to be piscivorous. To investigate mechanisms that may regulate trout and galaxiid co-occurrence, I investigated differences in antipredator behaviour and growth rate between stream types with varying levels of trout presence. Using quantitative survey data collected between 1997 and 2006, I found that trout abundance was low and varied annually in frequently disturbed sites compared their high abundance in stable streams. This finding was used to classify streams into three population types, barrier (trout absent), disturbed (trout presence intermittent) and sympatric (constant trout presence). Using this classification, I tested the effects of trout chemical cues on galaxiid activity and refuge use in artificial channels. There were no differences in activity or refuge use between trout odour and there were no effects of population type or galaxiid size during both the day and the night. Using otolith weight-fish length relationships in galaxiids collected from each population type, I found that galaxiid growth rate was higher in disturbed streams than in stable streams either with or without trout. An experiment manipulating trout size and presence, over two months in a natural stream, found galaxiids from treatments without trout grew slower than those with trout. Slow growth rates in galaxiids above trout-migration barriers and in sympatry, combined with low growth rates in treatments without trout suggest that the mechanisms that regulate galaxiid growth are more complex than previously thought.

This thesis investigates whether there are alternative mechanisms of tip growth in invasive and non-invasive hyphae of the fungus Neurospora crassa. The cytoskeleton protein actin is thought to play a pivotal role in hyphal tip growth, performing a multitude of tasks, one of which may be the provision of a resistive force to counter turgor pressure. An Actin depleted zone (ADZ) was the dominant feature of invasive hyphal tips, which was largely absent from non-invasive hyphae. The Spitzenkörper was slightly larger in invasive hyphae but this size difference alone was thought insufficient to account for the exclusion of filamentous actin (F-actin) from the tip. The actin nucleating protein formin was found at sites where actin nucleation is occurring, while cofilin, a protein that severs F-actin, was found to localise where F-actin disassembly was likely to be occurring. It is suggested that these proteins are likely to play a role in controlling a dynamic cytoskeleton, rearrangements of which are required for the two modes of growth. Invasive hyphae were found to generate a higher turgor than non-invasive hyphae. These results suggest that the F-actin rearrangements facilitated by cofilin give an ADZ that may play a role in invasive hyphal tip growth; possibly through a reduction of tip resistance; thus enabling the provision of a greater protrusive force by turgor.

3 pp. / Tips for Arizona's Rural Landowners Series -- Plants Unit / The Tips for Arizona's Rural Landowners Fact Sheet Series is intended to educate homeowners who have recently purchased small acreages in Arizona. The purpose of the series is to give homeowners information about living in rural settings. The Plant Unit includes fact sheets on Arizona's native plant law, small-scale gardening, pasture establishment, invasive plants, and assessing plant damage.

Investigations were carried out into the allelopathic potential of the invasive alien annual Himalayan Balsam (Impatiens glandulifera Royle) using a series of bioassays, including ones developed or adapted for this study. They were evaluated for their suitability to detect three of the four main modes of allelochemical release, namely leaching, exudation and decomposition. Assays which involved the measurement of lettuce radicles and hypocotyls gave reliable results and allowed a range of different Impatiens material, both living and dead, to be assessed and ranked according to the allelopathic effects demonstrated. Attempts were made to isolate resource competition from allelopathy using separately grown but connected donor and receiver plants and a density dependent design where single I. glandulifera plants were grown in pots with variable numbers of receiver plants. Results proved inconclusive. Initial experiments showed that the allelopathic potential of I. glandulifera varied according to the organ from which the material was derived. Pods, leaves and stems produced the greatest inhibition of lettuce seedlings. Effects on germination were not significant at most of the concentrations tested. Live roots of I. glandulifera plants produced pronounced orange staining of the agar into which they were placed and showed clear evidence of distance dependent inhibition of lettuce radicles. Effects were limited to growth rather than germination of the test plants. Germinating I. glandulifera seeds caused a significant inhibition of lettuce radicle elongation when the two species were grown together in an agar medium. The inhibitory effects increased significantly with increasing exposure time. Increasing I. glandulifera seedling number also produced significant reductions in lettuce radicle length. Dormant seeds, by contrast, stimulated growth. Dead seeds did not produce significant changes to the growth of the test plants. When rhizosphere soil was gathered from pot grown I. glandulifera plants, the results were mixed. Initial samples inhibited growth, whereas those collected from dying plants over a period of weeks stimulated growth. Further experimentation is required before the indications of allelopathic interactions demonstrated here can be applied to the behaviour of wild populations of I. glandulifera.

Understanding why some introduced alien plant species become invasive whilst others fail is a fundamental question in ecology, not least because of the considerable ecological and economic damage caused by invasive plants globally. Identifying factors that drive alien plant invasions can inform efforts to predict the nsk of invasion by an introduced plant species. This would allow prevention of introduction of high risk aliens, as well as targeted management of species already introduced that pose the latest threats to the ecolocal integrity of host ecosystems. However, generalisations among the findings of comparative plant invasion studies have been limited by a lack of control of confounding variables such as propagule pressure, time since introduction and phylogeny, a lack of knowledge of introduced species that failed to establish, and inconsistent use of terminology defining the invasion process. This thesis used Amani Botanical Garden (ABG) in the East Usambara Mountains of Tanzania, as a comparative case study system to assess the relative ability of multiple factors to explain invasion success of species introduced to a tropical forest ecosystem.

Invasive plants may leave enemies behind when they colonize a new habitat, allowing selection to favor increased investment in growth and/or reproduction over defensive traits. Previous studies have identified reduced diversity of potential bacterial pathogens and evolutionary increases in growth and reproduction in invading populations of yellow starthistle (Centaurea solstitialis). This study leverages a recently developed high-throughput assay of immune function to test for evidence of a trade-off between increased growth and defense against bacterial pathogens in yellow starthistle's invasion of California (USA). Seven bacterial strains were cultured from infected leaf tissue in the native range. Healthy leaf tissue from five native European collections and six invading collections were exposed to these native bacterial strains. A standardized assay of peroxidase activity was used measure the oxidative burst immune response to pathogen recognition by the leaf. Immune responses were compared to plant growth within and between ranges to assess evidence for a trade-off. Plant genotypes from the native range demonstrated a higher immune response to bacterial strains than did invading genotypes, consistent with a trade-off with plant growth across regions. The same trade-off was also apparent across genotypes from the native range, but not across genotypes from the invaded range. Our results provide evidence that increased growth in a highly invasive plant species may come at a cost to immune function, consistent with the hypothesis that escape from enemies can provide opportunities for shifts in resource allocation that favor the proliferation of non-native species.

The species of two genera in Insecta: Hemiptera: Adelgidae were investigated through the lenses of genetics, morphology, life cycle and host species. The systematics are unclear due to complex life cycles, including multigenerational polymorphism, host switching and cyclical parthenogenesis. I studied the hemlock adelgids, including the nonnative invasive hemlock woolly adelgid on the east coast of the United States, that are currently viewed as a single species. I used multivariate morphometric analyses to identify morphological differences among hemlock adelgid lineages. With principal component analyses and MANOVA, the six lineages that were used in this study were found to be significantly different from each other. The findings of this project provide evidence for taxonomic designation of different hemlock adelgid lineages, which will hopefully inform regulation of these distinct lineages, as these distinctions between the lineages of hemlock adelgids could equate to other biological differences, ex. cold tolerance, host specialization, fecundity and dispersal ability. I also investigated the relationship between species Pineus similis, Pineus abietinus through phylogeny, genetic distances, life cycle and host species. This was done through using three mitochondrial (COI, COII, cytB) and one nuclear (EF1a) gene, in Maximum Parsimony, Maximum Likelihood and Bayesian analyses, along with genetic distance measurements. The P. similis and P. abietinus on Pinus could not be separated within the Bayesian analyses, and P. similis and P. abietinus on Abies had low calculated distance measurements (2.98%) compared to the average distance between species within the genus (28.07%). These two studies emphasize the current confusion within the Adelgidae family, and the results presented in this thesis stress the importance of using components of multiple species concepts to better understand the systematics of these lineages.

Invasive woody shrubs are a problem when they displace native species and threaten habitats, especially those that harbor rare or endangered species. They not only compete with native plants, but also alter habitat and food that many organisms depend upon. Invasive plants undergo a release from their specialist predators in the nonnative range, providing them advantages over native species. Because modes and pathways of how invasive species spread are not fully understood, predicting spread and implementing restoration ecological controls remain inexact. Due to the lack of comparative studies on woody shrubs, especially invasive privets, we understand very little about conditions affecting their invasiveness. A study was conducted near Dallas, Texas to determine if privet has allelopathic properties that influences growth of native plants. Soil nutrients and other analyses were made and compared between field plots supporting privet, plots in which privet has been removed, and plots where privet has not been observed. In some field plots, natives were planted under the three previously mentioned conditions, and their survival and condition were monitored to evaluate effects of privet on their establishment and growth. It was found that Chinese privet did hinder seed germination in red mulberry, soapberry and beautyberry and root formation in beautyberry cuttings. The soil in the sites were found to be normal for bottomland forests that endured two flooding events within one year.

Il est maintenant admis que la composition de la plaque athérosclérotique est un déterminant majeur de sa vulnérabilité à se rompre. Vu que la composition de la plaque affecte ses propriétés mécaniques, l'évaluation locale des propriétés mécaniques de la plaque d'athérome peut nous informer sur sa vulnérabilité. L'objectif est de comparer les techniques d’élastographie ultrasonores endovasculaire (EVE) et non-invasive (NIVE) en fonction de leur potentiel à identifier les composantes calcifiées et lipidiques de la plaque. Les acquisitions intravasculaire et extravasculaire ont été effectuées sur les artères carotidiennes de neuf porcs hypercholestérolémiques à l’aide d’un cathéter de 20 MHz et d'une sonde linéaire de 7.5 MHz, respectivement. Les valeurs de déformation radiale et axiale, rapportés par EVE et NIVE, ont été corrélées avec le pourcentage des zones histologiques calcifiées et lipidiques pour cinq plaques. Nos résultats démontrent une bonne corrélation positive entre les déformations et les composantes calcifiées (r2 = 0.82, P = 0.034 valeur par EVE et r2 = 0.80, P = 0.041 valeur par NIVE). Une forte corrélation entre les déformations axiales et les contenus lipidiques par NIVE (r2 = 0.92, P-value = 0.010) a été obtenue. En conclusion, NIVE et EVE sont des techniques potentielles pour identifier les composants de la plaque et aider les médecins à diagnostiquer précocement les plaques vulnérables. / It is now widely accepted that plaque composition is a major determinant of plaque’s vulnerability to rupture. Since composition of the plaque affects its mechanical properties, the local assessment of mechanical properties of atherosclerotic plaque may inform us about plaque’s vulnerability. The objective is to compare ultrasonic endovascular elastography (EVE) versus non-invasive vascular elastography (NIVE) according to their potential to identify plaque contents. Intravascular and extravascular acquisitions were performed on carotid arteries of nine hypercholesterolemic minipigs with a 20 MHz catheter and a 7.5 MHz standard probe, respectively. Radial and axial strain values, reported by EVE and NIVE respectively, were correlated with histological area of lipid and calcium for five plaques. Our results demonstrate a good positive correlation between strains and calcified contents (r2=0.82, P-value=0.034 by EVE and r2=0.80, P-value= 0.041 by NIVE). Additionally, there is a strong correlation between axial strains and lipid contents by NIVE (r2=0.92, P-value= 0.010). In conclusion, NIVE and EVE are the potential techniques to identify plaque components and to help physicians to early diagnose the vulnerable plaques.