The fish populations in small southern African reservoirs are largely unexploited and there is potential for fisheries development. However, the development of sustainable fisheries requires reliable estimates of potential yield or production. Empirical models that have been developed to predict fish production only apply to large water bodies and only predict total fish production, not the production of individual species. Small reservoirs generally have few commercially important species and therefore species-specific fish production models are an alternative approach. The small reservoirs of the Eastern Cape are dominated by the moggel (Labeo umbratus). The principal objectives of this thesis were to gain an understanding of the ecology of small reservoirs and the function of moggel in these systems. This information was used to design a research approach to rapidly develop species-specific models for small reservoirs in southern Africa. The limnology of two small reservoirs was compared. During the study period the reservoirs were turbid and showed a warm, monomictic pattern of thermal stratification. Anthropogenic pressure in the reservoir catchments appeared to be the overriding factor increasing the nutrient input to the reservoirs and consequently, influencing the biomass of algae in the reservoirs. The feeding biology of moggel in Katriver and Laing reservoirs was examined. Moggel are detrivorous and successfully digested diatoms. The slower growth rate of moggel in Katriver reservoir was attributed to the poorer nutritional value of the diet as a consequence of the lower concentration of diatoms in the detrital aggregate. The reproductive characteristics of moggel were examined in four reservoirs. Moggel were able to reproduce successfully in the reservoirs. This could be attributed to their r-selected reproductive strategy, with a high fecundity and an extended spawning season and their ability to spawn in a floodplain environment. Differences in recruitment success between years were found to be a consequence of the timing and duration of seasonal rains. The number of mature females in a population and the availability of suitable spawning habitat influenced recruitment success. The life history of the moggel in five reservoirs was compared. Growth appeared to be related to food availability, while mortality was lower in the populations where food was abundant and there were less predatory species. Size and age at maturity were not affected by environmental factors, but were dependent on growth and mortality. Three contrasting methods were used to estimate moggel gillnet selectivity. The Sechin, direct fyke net method and length-structured model all yielded similar results and correction factors obtained from the selectivity study were applied to the gillnet data to estimate the fish population size and structure in each reservoir. Using information from the life history and selectivity studies, the biomass and production of five moggel populations was estimated and related to abiotic and biotic factors in the reservoirs and their catchments. Moggel biomass and production was dependent on the biomass of algae, which was dependent on morphoedaphic characteristics of the reservoirs. Small, shallow reservoirs with a reasonable amount of human habitation in their catchments would sustain the highest algal biomass and provided they had adequate spawning habitat would also have the highest moggel biomass and production. The future research requirements for small reservoir fisheries are outlined and include a three-year program to develop a species-specific production model for any of the dominant species.

The construction of the Katse dam was completed in 1996. The dam started filling in 1995 and reached full capacity in early 1998. It forms part of Phase 1A of the Lesotho Highlands Water Project (LHWP). The main aim of the project is to provide revenue to Lesotho, by transferring water from the catchment of the Senqu (Orange) River in Lesotho to South Africa’s major industrial and population centres. During the implementation of the project, an estimated 130 people were displaced. However, the most serious impact has been the loss of the traditional way of life in the form of arable and grazing land as a consequence of inundation. One of the obligations of the project is to ensure that the standard of living of those affected by the project is not impaired. The Lesotho Highlands Development Authority identified a number of rural development projects, which included fisheries development. This study is an integral part of fisheries development in Lesotho. The aim of this study was to gain an understanding of the biology and the demographics of the fish species in the lake. This information would serve as the basis for the development of a management plan for the sustainable utilisation of the fisheries resources. To achieve this aim, the following specific objectives were addressed: 1. Investigation of the biology of the three principal species. 2. Description of the key population parameters (growth, mortality & recruitment). 3. Investigation of the distribution and relative abundance of the three species. The three principal species in the Katse dam are rainbow trout, Oncorhynchus mykiss, and the two cyprinids, Barbus aeneus and Labeo capensis. Sectioned otoliths were used to age O. mykiss while both otoliths and scales were used to age B. aeneus and L. capensis. Marginal zone analysis revealed that slow growth was experienced in winter for the three species. The maximum-recorded age for both B. aeneus and L. capensis was 12 years while O. mykiss reached 4 years. There was no significant difference in growth rates of the different sexes and growth was best described by the 3 parameter Von-Bertalanfy growth model as Lt = 603[1-e⁻°·¹⁵⁽t ⁺ °·°³⁾] for B. aeneus, Lt = 526[1-e⁻°·²¹⁽t ⁺ °·⁹⁾] for O. mykiss and Lt = 521[1-e⁻°·¹⁷⁽t ⁺ °·²¹⁾] for L.capensis. Male and female O. mykiss attained 50% sexual maturity (Lm₅₀) at 235 and 275mm FL, respectively. There was no difference in Lm₅₀ for male and female B. aeneus and L. capensis. B. aeneus reached sexual maturity at 285mm FL while L. capensis reached sexual maturity at 244mm. Both cyprinid species spawned in summer (November to January) while O. mykiss spawned in winter (May to August). The mean total mortality rate (Z) estimated from catch curves and Butterworth et al (1989) equation was 0.72 yr⁻¹ for B. aeneus, 0.62 yr⁻¹ for L. capensis and 1.32 yr⁻¹ for O. mykiss. The estimate of natural mortality was 0.41 yr⁻¹ for both B. aeneus and L. capensis and 0.81yr⁻¹ for O. mykiss.

The Orange-Fish and Cookhouse tunnels that are part of a major inter-basin water transfer scheme (IBT) act as a pathway for several fish species from the Orange River system to enter the Great Fish and Sundays River systems in South Africa. These include Labeo capensis and L. umbratus. Labeo capensis was restricted to the Orange River system before the inter-basin water transfer scheme. Labeo umbratus occurred naturally in the Orange River and in southern flowing river systems. Previous studies showed that the two species hybridise in Hardap Dam, located in a tributary of the Orange River system in Namibia. There are also unconfirmed reports of hybrids from Darlington Dam on the Sundays River system. The aim of the thesis was to confirm hybridisation in Hardap Dam, assess whether hybridisation between L. capensis and L. umbratus has occurred in Darlington Dam and to gain a better understanding of the diversity of these two species. Morphology (morphometrics and meristics), a nuclear S7 intron and the mitochondrial cytochrome ♭ gene were used to assess for hybridisation. A total of 275 specimens were analysed from across the geographical range of the two species. The two species could be distinguished using morphometrics (dorsal fin base, interorbital width and operculum to eye distance) and meristics (lateral line, origin of the dorsal fin to lateral line, origin of the pelvic fin to lateral line and caudal peduncle scale counts) characters. Hybrids from Hardap and Darlington dams were placed between the two species clusters. Labeo umbratus from the Orange River and southern flowing rivers formed a single cluster. The two species could also be distinguished from each other with six nuclear DNA mutations and hybrids were heterozygous at such sites in both dams. Labeo umbratus populations from the Orange River and southern flowing rivers (Gouritz, Gamtoos, Sundays, Bushmans, Great Fish and Nahoon) formed a single lineage. Analysis of mitochondrial DNA, however, revealed that L. umbratus populations from the Orange River and southern flowing rivers were two lineages that differ from each other by 5 mutations. Labeo capensis could be differentiated from both these lineages. Being maternally inherited, mitochondrial DNA did not reveal hybridisation, but ten specimens with L. capensis haplotypes were found in the Darlington Dam. In Hardap Dam, however, it appears that only L. capensis mitochondrial DNA haplotypes persist, despite morphological and nuclear DNA analysis suggesting that both morphs and hybrids of the two species occur. The genetic integrity of these Labeo species has therefore been compromised in at least Hardap and Darlington dams. The Great Fish and Sundays populations are considered to be under threat of complete introgression. The Kat River and Slagboom Dam populations that were isolated before the IBTs have to remain isolated to protect the genetic integrity of the southern lineage of L. umbratus in these two systems.

M.Sc. (Zoology) / The world’s ever increasing human population has lead to an almost unimaginable amount of waste being released in to the aquatic environment every day. Aquatic systems are faced with the greatest risk due to the fact that water is an indispensable resource required for industrial and agricultural processes. In recent years there has been a dire need for the monitoring and rehabilitation of aquatic systems. As a result many biological monitoring programmes were set into place in an attempt to manage this problem. The use of aquatic organisms as sentinels for biomonitoring studies has been wildly accepted with the majority of biomonitoring research focusing on the use of various fish and invertebrate species as aquatic sentinel organisms. However, the use of parasites as sentinel organisms is a relatively new field and as a result there has been little published work on the use of monogenean ectoparasites parasites as such sentinels. The bioaccumulation and subsequent biomagnification of metals by certain parasite species is well known, with bulk of the published work focusing on endoparasites (cestodes, acanthocephalans & nematodes), these published studies indicate that some species of endoparasites exhibit a remarkable ability to biomagnify metals in concentrations that far exceed that of their respective hosts as well as the ambient environment. Thus this project aims to assess the bioaccumulation and biomagnification of metals by the ectoparasitic diplozoon. The study site that was chosen for this project was the Vaal Dam; this site was deemed appropriate due to its near pristine condition and major economic importance. This meant that this particular site is ideal for the testing of a new biomonitoring system. All field sampling was performed around UJ Island (26°52.249’S; 20°10.249’E) from February 2011 to April 2011. A total of 29 Labeo umbratus (Smith, 1841) were collected with the aid of gill nets and three sediment samples were also taken using a grab sampler. Water quality data was obtained from the Rand Water Analytical Facility in Vereeniging as this organisation routinely monitors of the water quality parameters and the metal concentrations within the surface waters of the Vaal Dam, this information was obtained with the aid of data loggers situated in the dam...

Thesis (M. Sc. (Zoology)) -- University of Limpopo, 2015 / The unprecedented expansion in human population and industry, since the industrial revolution in the late 1700s, has led to increased anthropogenic activities which have indisputably impacted freshwater ecosystems and biological communities therein, including fish. Although this has understandably been the focus, under natural aquatic conditions, no organism is only affected by pollution. Parasites have also been shown in a number of interdisciplinary studies to affect the health of aquatic hosts (amphibians, crustaceans, fish, and mammals). This is illustrated in a number of comprehensive studies the detrimental effects parasites exacerbate when their hosts (fish) are stressed. Therefore, the ability of parasites to interact with anthropogenic stressors, as well as effects they have on the genetic, cellular or tissue level of their host is crucial in conservation and sustaining aquatic biodiversity. As such, the present study examined the combined effects of pollution and metazoan parasites on the health and oxidative stress biomarkers, evaluated for the first time for silver carp, Hypophthalmichthys molitrix (Valenciennes, 1844) and rednose mudfish, Labeo rosae Steindachner, 1894, in one of South Africa’s impacted freshwater ecosystems, Flag Boshielo Dam, Olifants River System, Limpopo Province. Seasonal surveys were conducted from February 2012–January 2013. A total of 111 H. molitrix and 116 L. rosae fish specimens were collected using conventional angling gear, scoop and gill nets with stretched mesh sizes of 30–110 mm. The two selected cyprinid fish species were assessed for oxidative stress biomarkers [Glutathione S-transferase (GST), lipid peroxidation (MDA) and Total Antioxidant Capacity (TAC)] and parasitism of metazoan parasites. Concentrations of biomarkers of oxidative damage and antioxidant defense in the gill and liver tissue were measured to assess how these major organs of the immune system responded to oxidative stress associated with parasitic infections. In addition, water quality analyses were carried out by testing an assay of physico-chemical parameters to establish the level of contamination. Fish health was assessed using the Health Assessment Index (HAI), refined Parasite Index (PI), Inverted Parasite Index (IPI) and Condition Factor (K) protocols. Relative to previous studies at Flag Boshielo Dam, water quality results showed an increase of nutrients, major ions and several metals which may have adverse effects that may comprise fish health; however, this dam remains moderately polluted in a mesotrophic state. The fish health assessment results indicated that H. molitrix was more affected in terms of the necropsy and parasite based assessments (HAI, IPI and K) with mean±SD of 65.68±35.51; 68.29±25; 0.82±0.20, respectively, as compared to 39.14±22.44; 28.79±18.33; 1.17±0.21 for L. rosae during the study. In addition, significantly higher parasitic infections (mean prevalence of infection with any species of parasite = 45.3±0.13) were observed for H. molitrix than L. rosae (12.0±0.05). Furthermore, there was considerable variation in biomarker concentration between highly infected and non-infected fish, for and between each species and tissues with regard to parasite infection, suggesting that the specific functions of each tissue are associated with their susceptibility to oxidative stress, as well as their ability to defend against oxidative damage. These results illustrate that although fish are affected by aquatic contaminants they are to an extent affected by parasites, which may act synergistically on the health of the two fish species. Most importantly, it was suggested that knowledge on the parasites of alien H. molitrix when compared to indigenous L. rosae may give an indication of how adaptive this fish are to new localities as well as expands the information on the rarely studied biology, epizootiology and ecological interactions of these two cyprinid species. Keywords: Health Assessment Index, refined Parasite Index, Inverted Parasite Index, Condition Factor, water quality, lipid peroxidation, Glutathione S-transferase, Total Antioxidant Capacity, Hypophthalmichthys molitrix, Labeo rosae, Flag Boshielo Dam.