Thesis (Ph.D. (Zoology)) --University of Limpopo (Turfloop Campus), 2011 / South Africa's water resources are limited and scarce in global terms, due to the fact that the country's climate varies from desert to semi-desert in the west to sub-humid along the coastal area. The country is also expected to experience further variability in rainfall, reduced precipitation and increased evaporation as a result of climate change. At the projected population growth and economic development rates, it is unlikely that the projected demand on water resources in South Africa will be sustainable. An additional concern is the declining water quality due to domestic, mining and industrial pollution, and eutrophication as well as salinisation due to agricultural pollution. Thus, aquatic ecosystems must be protected, monitored and managed to ensure sustainable resource use. The aim of the study was to evaluate and compare possible environmental deterioration by analysing fish health and parasite diversity in three dams within the Limpopo and Olifants River Systems by using the fish Health Assessment Index (HAI) and the Inverted Parasite Index (IPI). The intention of the study was to substantiate the theories behind the HAI and IPI in a bid to augment strategies to manage water quality, fish health and aquatic biodiversity. Seasonal surveys were carried out between April 2008 and April 2010 at three localities. The Luphephe-Nwanedi Dams are in a Nature Reserve located in a rural catchment, the Flag Boshielo Dam in an industrualised and mining catchment whereas the Return Water Dam is located on a platinum mining premise. Clarias gariepinus (Burchell, 1822) and Oreochromis mossambicus (Peters, 1852) were collected with the aid of gill nets and used as indicator fish species. Fish were examined for external parasites after which they were weighed and measured. Blood was drawn and skin smears were made. The skin smears were examined with a dissecting microscope for the presence of parasites. Fish were killed, dissected and then examined as prescribed in the fish HAI. From the ecto- and endoparasite data collected, infection statistics and ecological parameters were calculated. The HAI values were calculated for each fish species at each sampling site. To verify the results of the HAI, water quality was included in the studyThe nutrients and mining related pollutants of the three dams differed to a great extent and showed a similar increasing trend in the order: Luphephe-Nwanedi Dams < Flag Boshielo Dam < Return water Dam. Our results were consistent with previous work describing Luphephe-Nwanedi Dams as essentially unimpacted and Flag Boshielo Dam as impacted with a combination of mining and agricultural effluents. The results have shown that the Return Water Dam is an extremely polluted site with high levels of nutrients and metals. Fish health of both species responded similarly to polluted sites although mean population HAI results showed that C. gariepinus was more affected in terms of haematocrit necropsy-related alterations. The top six metrics that correlated most to fish health scores were nearly the same for both species (i.e. haematocrit values, inverted ectoparasite index, condition of the kidney, liver, gills and skin). The parasite community of C. gariepinus comprised 19 metazoan species. Seventeen parasite species were recovered from fish sampled from Luphephe-Nwanedi Dams compared to 11 at Flag Boshielo Dam and four at the Return Water Dam. The parasite community of O. mossambicus comprised 20 metazoan species. A total of 19 species, 17 species, and 4 species of metazoan parasites from O. mossambicus were obtained from Luphephe-Nwanedi Dams, Flag Boshielo Dam and the Return Water Dam, respectively. In both fish species, the Shannon Wiener Index, the inverse Simpson Index, equitability and the number of metazoan parasite individuals were highest in fish from Luphephe-Nwanedi Dams. The results of this study emphasized the negative impacts of urbanization, agricultural and mining activities on the environment. The fish hosts collected in the mining premise supported the poorest and least diverse parasite communities of all sampled sites, with virtual depletion of both heteroxenous and monoxenous species. The Return Water Dam may therefore be regarded as a simulation model for a severely environmentally deteriorated, impoverished habitat, in which all or part of the intermediate hosts have been depleted, enabling the survival of hardy parasite species only. Further studies should address the identification of parasite life stages that are more sensitive to pollutants / The National Research Foundation,the Flemish Interuniversity Council(VLIR-UOS),and the Division for Research Administration and Development,University of Limpopo

Thesis (MSc.) Zoology)) -- University of Limpopo, 2019 / In South Africa, a high anthropogenic demand of water for domestic, recreational, agricultural, urbanisation and industrial purposes has placed enormous pressure on freshwater resources and has led to a decline in water quality. In addition to measuring water quality variables, the health assessment index (HAI) advocated by AvenantOldewage and Swanepoel (1993), and modified by Crafford and Avenant-Oldewage (2009) by incorporating the inverted parasite index (IPI), and adapted further by Madanire-Moyo et al. (2012) who excluded the white blood cells counts, has been used as a rapid and inexpensive means of assessing and monitoring fish health and, in turn, the state of aquatic ecosystems. However, few studies have evaluated the latter approach in conjunction with other biomonitoring indices to assess the water quality of impoundments. Thus, the aim of this study was twofold. The first was to evaluate the HAI adapted by Madanire-Moyo et al. (2012) as a means to establish the health status of Oreochromis mossambicus (Peters, 1852) sampled from various impoundments based on a once-off survey. The second was to establish if the adapted HAI, in conjunction with selected biomonitoring indices and environmental variables, could describe monthly and seasonal fluctuations of O. mossambicus health. Once-off surveys were conducted between April and May 2016 at five impoundments. The Luphephe-Nwanedi Dam located in the upper catchment of the Limpopo River System and Rhenosterkop Dam situated in the Elands River, a tributary of the Olifants River System, served as control sites due to little or no anthropogenic activities occurring in their catchment areas. In addition, surveys were conducted at Loskop and Flag Boshielo dams and Phalaborwa Barrage situated in the main stem of the Olifants River for comparison purposes. The latter three impoundments were selected because they vary in water quality and pollution levels. Monthly surveys were carried out at Flag Boshielo Dam from February 2016 to February 2017 to establish if the biomonitoring tools and the quantification of water and sediment quality variables, could describe and predict seasonal fluctuations in the health of O. mossambicus. To this end, water quality variables were measured during each survey. Water and sediment samples were collected for analysis of nutrients and metals. Oreochromis mossambicus were collected using gill nets. Fish health was assessed using the adapted HAI that was based on observing parasite burden, haematocrit determination and anomalies in body tissues and organs in conjunction with determining gonad and iv hepato-somatic indices, the condition factor, blood glucose levels, microscopy analyses of fish gills and metal concentrations in fish muscle tissues. Water quality in terms of pH, total dissolved solids and electrical conductivity, nutrients and some aqueous and sediment metals exhibited significant differences (p ˂ 0.05) between impoundments surveyed with water quality from good to poor being in the order of: Luphephe-Nwanedi Dams ˂ Rhenosterkop Dam ˂ Loskop Dam ˂ Phalaborwa Barrage ˂ Flag Boshielo Dam. The HAI scores varied significantly (p ˂ 0.0001) between impoundments and substantiated water quality variables results during once off surveys, indicating that the health of fish from Flag Boshielo Dam were most affected when compared to the health of fish surveyed from the other impoundments. Findings from monthly surveys conducted at Flag Boshielo Dam indicated better conditions in terms of water quality variables during a period of high inflow as opposed to periods of low inflow. The HAI scores obtained for fish exhibited significant (p ˂ 0.0001) differences between the months surveyed and were found to be in agreement with the water quality findings, indicating that flow regimes and water quality of an impoundment have an impact on fish health. The condition and somatic indices findings did not seem to be sensitive enough to discriminate between the impoundments during the once off surveys. While during monthly surveys, these indices were significantly (p ˂ 0.0001) different between the months, showing to be affected by seasonal fluctuations. Knowledge of the HAI in conjunction with blood glucose levels, gill histopathology and the arithmetic mean thickness of gill epithelium (Har) best described the health of fish in both the once off and monthly surveys. In conclusion, the findings of this study emphasised the HAI premise that fish from more polluted sites would be more impacted as opposed to less impacted sites, making the HAI adapted by Madanire-Moyo et al. (2012) an effective and rapid biomonitoring tool that can be used in the field. Furthermore, this study proved that the HAI can be used either solely or in association with the parasite index (PI) or IPI depending on the objectives of the study, as no pronounced differences were evident when using HAI, HAI with PI and HAI with IPI. / National Research Foundation (NRF) and Water Research Commission (WRC)

Thesis (M. Sc. (Zoology)) -- University of Limpopo, 2015 / The unprecedented expansion in human population and industry, since the industrial revolution in the late 1700s, has led to increased anthropogenic activities which have indisputably impacted freshwater ecosystems and biological communities therein, including fish. Although this has understandably been the focus, under natural aquatic conditions, no organism is only affected by pollution. Parasites have also been shown in a number of interdisciplinary studies to affect the health of aquatic hosts (amphibians, crustaceans, fish, and mammals). This is illustrated in a number of comprehensive studies the detrimental effects parasites exacerbate when their hosts (fish) are stressed. Therefore, the ability of parasites to interact with anthropogenic stressors, as well as effects they have on the genetic, cellular or tissue level of their host is crucial in conservation and sustaining aquatic biodiversity. As such, the present study examined the combined effects of pollution and metazoan parasites on the health and oxidative stress biomarkers, evaluated for the first time for silver carp, Hypophthalmichthys molitrix (Valenciennes, 1844) and rednose mudfish, Labeo rosae Steindachner, 1894, in one of South Africa’s impacted freshwater ecosystems, Flag Boshielo Dam, Olifants River System, Limpopo Province. Seasonal surveys were conducted from February 2012–January 2013. A total of 111 H. molitrix and 116 L. rosae fish specimens were collected using conventional angling gear, scoop and gill nets with stretched mesh sizes of 30–110 mm. The two selected cyprinid fish species were assessed for oxidative stress biomarkers [Glutathione S-transferase (GST), lipid peroxidation (MDA) and Total Antioxidant Capacity (TAC)] and parasitism of metazoan parasites. Concentrations of biomarkers of oxidative damage and antioxidant defense in the gill and liver tissue were measured to assess how these major organs of the immune system responded to oxidative stress associated with parasitic infections. In addition, water quality analyses were carried out by testing an assay of physico-chemical parameters to establish the level of contamination. Fish health was assessed using the Health Assessment Index (HAI), refined Parasite Index (PI), Inverted Parasite Index (IPI) and Condition Factor (K) protocols. Relative to previous studies at Flag Boshielo Dam, water quality results showed an increase of nutrients, major ions and several metals which may have adverse effects that may comprise fish health; however, this dam remains moderately polluted in a mesotrophic state. The fish health assessment results indicated that H. molitrix was more affected in terms of the necropsy and parasite based assessments (HAI, IPI and K) with mean±SD of 65.68±35.51; 68.29±25; 0.82±0.20, respectively, as compared to 39.14±22.44; 28.79±18.33; 1.17±0.21 for L. rosae during the study. In addition, significantly higher parasitic infections (mean prevalence of infection with any species of parasite = 45.3±0.13) were observed for H. molitrix than L. rosae (12.0±0.05). Furthermore, there was considerable variation in biomarker concentration between highly infected and non-infected fish, for and between each species and tissues with regard to parasite infection, suggesting that the specific functions of each tissue are associated with their susceptibility to oxidative stress, as well as their ability to defend against oxidative damage. These results illustrate that although fish are affected by aquatic contaminants they are to an extent affected by parasites, which may act synergistically on the health of the two fish species. Most importantly, it was suggested that knowledge on the parasites of alien H. molitrix when compared to indigenous L. rosae may give an indication of how adaptive this fish are to new localities as well as expands the information on the rarely studied biology, epizootiology and ecological interactions of these two cyprinid species. Keywords: Health Assessment Index, refined Parasite Index, Inverted Parasite Index, Condition Factor, water quality, lipid peroxidation, Glutathione S-transferase, Total Antioxidant Capacity, Hypophthalmichthys molitrix, Labeo rosae, Flag Boshielo Dam.