Doctor of Philosophy / Department of Agronomy / Eduardo Alvarez Santos / Measurements of methane (CH₄) emissions from livestock production could provide invaluable data to reduce uncertainties in the global CH₄ budget and to evaluate mitigation strategies to lower greenhouse gas (GHG) emissions. The eddy covariance (EC) technique has recently been applied as an alternative to measure CH₄ emissions from livestock systems, but heterogeneities in the source area and fetch limitations impose challenges to EC measurements. The main objectives of this study were to: 1) assess the performance of a closed-path EC system for measuring CH₄, CO₂, and H₂0 fluxes; 2) investigate the spatial variability of the EC fluxes in a cattle feedlot using flux footprint analysis; 3) estimate CH₄ emission rates per animal (Fanimal) from a beef cattle feedlot using the EC technique combined with two footprint models: an analytical footprint model (KM01) and a parametrization of a Lagrangian dispersion model (FFP); and 4) compare CH₄ emissions obtained using the EC technique and a footprint analysis with CH₄ emission estimates provided by a well-stablished backward-Lagrangian stochastic (bLS) model. A closed-path EC system was used to measure CH₄, CO₂, and H₂0 fluxes. To evaluate the performance of this closed-path system, a well-stablished open-path EC system was also deployed on the flux tower to measure CO₂ and H₂0 exchange. Methane concentration measurements and wind data provided by that system were used to estimate CH₄ emissions using the bLS model. The performance assessment that included comparison of gas cospectra and measured fluxes from the two EC systems showed that the closed-path system was suitable for the EC measurements. Flux values were quite variable during the field experiment. A one-dimensional flux footprint model was useful to interpret some of the flux temporal and spatial dynamics. Then, a more comprehensive data analysis was carried out using two-dimensional footprint models (FFP and KM01) to interpret fluxes and scale fluxes measured at landscape to animal level. The monthly average Fanimal, calculated using the footprint weighed stocking density ranged from 83 to 125 g animal⁻¹ d⁻¹ (KM01) and 75–114 g animal⁻¹ d⁻¹ (FFP). These emission values are consistent with the results from previous studies in feedlots however our results also suggested that in some occasions the movement of animals on the pens could have affected CH₄ emission estimates. The results from the comparisons between EC and bLS CH₄ emission estimates show good agreement (0.84; concordance coefficient) between the two methods. In addition, the precision of the EC as compared to the bLS estimates was improved by using a more rigorous fetch screening criterion. Overall, these results indicate that the eddy covariance technique can be successfully used to accurately measure CH₄ emissions from feedlot cattle. However, further work is still needed to quantify the uncertainties in Fanimal caused by errors in flux footprint model estimates and animal movement.

This experimental study analyses the dynamics of concentration fluctuations in a passive plume emitted by a point source within the turbulent boundary layer. We aim to extend the popular study of Fackrell and Robins (1982) about concentration fluctuations and fluxes from point sources by including third and fourth moments of concentration. We also further inquire into the influence of source conditions, such as the source size, source elevation and emission velocity, on higher order concentration moments. The data set is completed by a detailed description of the velocity statistics within the TBL, with exhaustive information on both the temporal and spatial structure of the flow. The experimental data-set has been used to test two different modeling ap- proaches: an analytical meandering plume model (in one and in three dimen- sions) and a Lagrangian stochastic micro-mixing model.

Dispersal, especially long-distance dispersal, is an important component in many disciplines within biology. Many species are passively dispersed by wind, not least spore-dispersed organisms. In this thesis I investigated the dispersal capacity of bryophytes by studying the colonization patterns from local scales (100 m) to landscape scales (20 km). The dispersal distances were measured from a known source (up to 600 m away) or inferred from a connectivity measure (1–20 km). I introduced acidic clay to measure the colonization rates over one season of a pioneer moss, Discelium nudum (I–III). I also investigated which vascular plants and bryophytes that had colonized limed mires approximately 20–30 years after the first disturbance (IV). Discelium effectively colonized new disturbed substrates over one season. Most spores were deposited up to 50 meters from a source but the relationship between local colonization rates and connectivity increased with distance up to 20 km (I–III). Also calcicolous wetland bryophyte species were good colonizers over similar distances, while vascular plants in the same environment colonized less frequently. Common bryophytes that produce spores frequently were more effective colonizers, while no effect of spore size was detected (IV). A mechanistic model that take into account meteorological parameters to simulate the trajectories for spores of Discelium nudum fitted rather well to the observed colonization pattern, especially if spore release thresholds in wind variation and humidity were accounted for (III). This thesis conclude that bryophytes in open habitats can disperse effectively across landscapes given that the regional spore source is large enough (i.e. are common in the region and produce spores abundantly). For spore-dispersed organisms in open landscapes I suggest that it is often the colonization phase and not the transport that is the main bottle-neck for maintaining populations across landscapes. / <p>At the time of the doctoral defence the following papesr were unpublished and had  a status as follows: Paper 2: Epubl ahead of print; Paper 3: Manuscript; Paper 4: Manuscript</p>

A better way to improve understanding and quantification of nitrous oxide (N₂O) emitted from intensive maize cropping systems is to develop an advanced emissions measurement method This study developed an open path (OP) method to measure N₂O emissions from four adjacent maize plots managed by tillage practices of no-till (NT) and chisel plow (ChP), and different nitrogen (N) treatments from 2014 to 2016. Anhydrous ammonia (220 kg NH₃-N ha^-1) was applied in once or equally split (full vs. split rate) and applied in different timing (Fall vs. Spring). The spring N application occurred either before planting (pre-plant) or in season (side-dress). Emissions measurements were conducted by using the OP method (the scanning OP Fourier transform infrared spectrometry (OP-FTIR) + the gas point-sampling system + a backward Lagrangian stochastic (bLS) dispersion model) and static closed chamber methods. The performance and feasibility of the OP measurements were assessed by a sensitivity analysis, starting with errors associated with the OP-FTIR for calculating N₂O concentrations, and then errors associated with the bLS model for estimating N₂O emissions. The quantification of N₂O concentrations using the OP-FTIR spectrum was influenced by ambient humidity, temperature, and the path length between a spectrometer and a retro-reflector. The optimal quantitative method mitigated these ambient interference effects on N₂O quantification. The averaged bias of the calculated N₂O concentrations from the spectra acquired from wide ranges of humidity (0.5 – 2.0 % water vapor content), temperature (10 – 35 °C), and path length (100 – 135 meters) was 1.4 %. The precision of the OP-FTIR N₂O concentrations was 5.4 part per billion(3σ) in a stationary flow condition for a 30-minute averaging period. The emissions measurement from multiple sources showed that the field of interest was likely interfered by adjacent fields. Fields with low emission rates were more sensitive to the adjacent fields with high emissions, resulting in substantial biases and uncertainties. The minimum detection limit of the N₂O emission rates was 1.2 µg m^-2 s^-1 (MDL; 3σ). The OP measurements showed that the NT practice potentially reduced N₂O emission compared with ChP. Under the long-term NT treatments, the split-N rate application (110 kg NH₃-N ha^-1 in the fall and spring) resulted in lower N₂O emissions than the full application (220 kg NH₃-N ha^-1 in the fall). The management of NT coupled with split-N rate application minimized N₂O emissions among treatments in this study, resulting in N₂O-N losses of 3.8, 13.2, and 6.6 N kg ha^-1 over 9-, 35-, and 20-days after the spring NH₃ application in 2014, 2015, and 2016, respectively. The spring pre-plant N application in 2015 also resulted in higher N₂O emissions than the spring side-dress application in 2016, and the increased N₂O-N loss was corresponding to lower N recovery efficiency in 2015 measurements. A comparison of chamber and OP measurements showed that soil N₂O emissions were likely underestimated by 10x without considering the wind-induced effect on gas transport at the ground-atmospheric interface. This study showed that the OP method provides a great opportunity to study agricultural N₂O emissions as well as management optimization for the sustainability of the agroecosystems.

The description of the effects of the wind meandering in the scalar dispersion is a challenging task, since this type of flow represents a physical state characterized by multiple scales. In this study, a Lagrangian stochastic diffusion model is derived to describe the scalar transport during the horizontal wind meandering phenomenon, occurring in a PBL. The model is derived from the linearization of the Langevin equation and employs a heuristic functional form, which represents the autocorrelation functions of the meandering. The new solutions, which describe the longitudinal and lateral wind components, were used to simulate two experiments of contaminants dispersion in low-wind conditions, INEL (USA) and GRAZ (Austria). The results of the comparison indicate that the new model reproduces fairly well the observed concentrations of contaminants and, therefore, satisfactorily describes the enhanced dispersion due to the presence of meandering. / Descrever os efeitos provocados pelo meandro do vento na dispersão de escalares é uma tarefa desafiadora, uma vez que este tipo de escoamento representa um estado físico caracterizado por múltiplas escalas. Neste trabalho, deriva-se um modelo estocátisco Lagrangiano para descrever a dispersão de escalares, na camada limite planetária, durante o fenômeno de meandro do vento horizontal. O modelo é derivado a partir da linearização da equação de Langevin e emprega uma forma funcional heurística, que representa as funções de autocorrelação do meandro. As novas soluções, que descrevem as componentes longitudinais e laterais do vento, foram empregadas para simular dois experimentos de dispersão de contaminantes em condições de vento fraco, INEL (USA) e GRAZ (Áustria). Os resultados das comparações indicam que o novo modelo pode ser usado para reproduzir as concentrações observadas de contaminantes e, portanto descreve de forma satisfatória a difusão reforçada provocada pelo meandro do vento.

Cette étude, menée principalement par des moyens expérimentaux, analyse la dynamique des fluctuations de concentration produites au sein d’un panache d’un scalaire passif émis par une source ponctuelle dans une couche limite turbulente. En étendant le travail de Fackrell and Robins (1982) sur les fluctuations de concentration, on décrit l’évolution des quatre premiers moments de la concentration et on étudie l’influence des conditions à la source (telles que la taille et la hauteur de la source et la vitesse de sortie) sur les moments mêmes. L’étude est complétée par une description détaillée des statistiques du champ de vitesse dans la couche limite, comprenant des informations sur la structure spatiale et temporelle de la turbulence. Cette base de données expérimentale a été utilisée pour valider deux différentes approches à la modélisation de la dispersion: un modèle analytique de meandering et un modèle Lagrangien stochastique avec un schéma de micro mélange. / This experimental study analyses the dynamics of concentration fluctuations in a passive plume emitted by a point source within the turbulent boundary layer. We aim to extend the popular study of Fackrell and Robins (1982) about concentration fluctuations and fluxes from point sources by including third and fourth moments of concentration. We also further inquire into the influence of source conditions, such as the source size, source elevation and emission velocity, on higher order concentration moments. The data set is completed by a detailed description of the velocity statistics within the TBL, with exhaustive information on both the temporal and spatial structure of the flow. The experimental data-set has been used to test two different modeling ap- proaches: an analytical meandering plume model (in one and in three dimen- sions) and a Lagrangian stochastic micro-mixing model.