Multiple-outcome longitudinal data are abundant in clinical investigations. For example, infections with different pathogenic organisms are often tested concurrently, and assessments are usually taken repeatedly over time. It is therefore natural to consider a multivariate modeling approach to accommodate the underlying interrelationship among the multiple longitudinally measured outcomes. This dissertation proposes a multivariate semiparametric modeling framework for such data. Relevant estimation and inference procedures as well as model selection tools are discussed within this modeling framework. The first part of this research focuses on the analytical issues concerning binary data. The second part extends the binary model to a more general situation for data from the exponential family of distributions. The proposed model accounts for the correlations across the outcomes as well as the temporal dependency among the repeated measures of each outcome within an individual. An important feature of the proposed model is the addition of a bivariate smooth function for the depiction of concurrent nonlinear and possibly interacting influences of two independent variables on each outcome. For model implementation, a general approach for parameter estimation is developed by using the maximum penalized likelihood method. For statistical inference, a likelihood-based resampling procedure is proposed to compare the bivariate nonlinear effect surfaces across the outcomes. The final part of the dissertation presents a variable selection tool to facilitate model development in practical data analysis. Using the adaptive least absolute shrinkage and selection operator (LASSO) penalty, the variable selection tool simultaneously identifies important fixed effects and random effects, determines the correlation structure of the outcomes, and selects the interaction effects in the bivariate smooth functions. Model selection and estimation are performed through a two-stage procedure based on an expectation-maximization (EM) algorithm. Simulation studies are conducted to evaluate the performance of the proposed methods. The utility of the methods is demonstrated through several clinical applications.

Indiana University-Purdue University Indianapolis (IUPUI) / Lithium ion (Li-ion) batteries have become integral parts of our lives; they are widely used in applications like handheld consumer products, automotive systems, and power tools among others. To extract maximum output from a Li-ion battery under optimal conditions it is imperative to have access to the state of the battery under every operating condition. Faults occurring in the battery when left unchecked can lead to irreversible, and under extreme conditions, catastrophic damage. In this thesis, an adaptive fault diagnosis technique is developed for Li-ion batteries. For the purpose of fault diagnosis the battery is modeled by using lumped electrical elements under the equivalent circuit paradigm. The model takes into account much of the electro-chemical phenomenon while keeping the computational effort at the minimum. The diagnosis process consists of multiple models representing the various conditions of the battery. A bank of observers is used to estimate the output of each model; the estimated output is compared with the measurement for generating residual signals. These residuals are then used in the multiple model adaptive estimation (MMAE) technique for generating probabilities and for detecting the signature faults. The effectiveness of the fault detection and identification process is also dependent on the model uncertainties caused by the battery modeling process. The diagnosis performance is compared for both the linear and nonlinear battery models. The non-linear battery model better captures the actual system dynamics and results in considerable improvement and hence robust battery fault diagnosis in real time. Furthermore, it is shown that the non-linear battery model enables precise battery condition monitoring in different degrees of over-discharge.