Samples of lucerne plants characteristic with local necrosic lesions, leave malformation and yellow spots on leaves were investigated with transmission electron microscopy. Virus particles observed there were filamentous ones of 600 to 700 nm long. Nucleic acid was isolated, transcribed and amplified using PCR. Genus-specific primers were designed based on reverse genetics from the highly conserved genes for carlaviruses, potexviruses and potyviruses. Successful amplification with carlavirus-specific primers, sequencing and comparison with sequences in GenBank database revealed presence of a carlavirus. This was later identified by nucleotide sequence comparison as a new isolate V4 of Alfalfa latent virus. Specific primers for isolate V4 were designed in a coat protein position. Half of the genom of this virus was obtained with PCR and PCR modified amplifications and compared with sequences of Alfalfa latent virus and Pea streak virus from GenBank.

La digestion anaérobie est un processus biologique de transformation de la matière organique permettant la production d’énergie sous forme de biogaz et de fertilisant sous forme de digestat. C’est une filière émergente en France, dont les objectifs de développement sont ambitieux. Le développement d’une filière industrielle sur l’ensemble du territoire Français nécessite la mise en oeuvre d’outils d’aide à la décision.Dans le cadre de cette Thèse nous proposons d’évaluer le potentiel de développement de la méthanisation collective, territoriale et agricole par injection du biogaz dans les réseaux de gaz naturel. Les travaux de recherchent portent sur trois axes : (1)l’évaluation du potentiel de mobilisation de biomasse d’origine agricole ; (2) la conception et l’étude de la viabilité économique de « modèle type » d’usine de méthanisation ; (3) l’évaluation de la performance technico-économique d’une exploitation agricole ayant recours à la méthanisation dans but d’accroitre son autonomie face aux énergies fossiles et aux engrais chimiques.Sur le premier volet, nous avons réalisé une étude cartographique des gisements agricoles mobilisables. Nous avons localisé et quantifié les quantités de coproduits de cultures et d’effluents d’élevage présent sur le territoire Français. Nous avons mis en évidence que le potentiel de mobilisation de biomasse agricole est de l’ordre de 57millions de tonnes de matière sèche. Ceci correspond à une production énergétique maximale de l’ordre de 158 TWh/an.Sur le deuxième volet, nous avons conçu des « modèles types » d’usines de méthanisation de différentes tailles, dont le biogaz est valorisé en biométhane par injection dans le réseau. Pour chacun des « modèles types » nous avons comparé la viabilité technico-économiques des modèles selon différentes « recettes » de biomasse. L’évaluation met en avant que pour chaque « modèle type », il existe un nombre limité de « recettes » permettant à chacun d’entre eux de trouver un équilibre technico-économique.Sur le troisième volet, nous nous sommes intéressés à l’autonomie azote et carburant que pourrait atteindre une exploitation agricole en méthanisant des cultures énergétiques dédiées de légumineuse. L’évaluation a été menée sur des fermes présentant des configurations différentes d’assolement et de rendement. Nous avons mis en évidence les conditions nécessaires pour que chaque configuration de ferme puisse atteindre l’autonomie. Il en ressort que dans certaines conditions, une exploitation « autonome » présente des marges brutes supérieures à celle d’une exploitation conventionnelle. / Anaerobic digestion is a biological process of transformation of organicmatter allowing the production of energy in the form of biogas and fertilizer in the formof digestate. It is an emerging sector in France, whose development objectives are ambitious. The development of an industrial sector throughout the French territory requires the implementation of decision support tools.As part of this thesis, we propose to evaluate the development potential of collective,territorial and agricultural methanation by injecting biogas into natural gas networks.Research work focuses on three axes: (1) the evaluation of the biomass mobilization potential of agricultural origin; (2) the design and study of the economic viability of a"typical model" of methanation plant; (3) the evaluation of the technical and economic performance of a farm using methanation in order to increase its autonomy in the face of fossil fuels and chemical fertilizers.We first carried out a cartographic study of mobilizable agricultural deposits. The quantities of co-products of crops and livestock effluents present on the French territor ywere located and quantified. Thus, we have shown that the potential for mobilization of agricultural biomass is of the order of 57 million tons of dry matter. This corresponds to a maximum energy production of about 158 TWh / year.And second, we have designed "model models" of biogas plants of different sizes,whose biogas is valorized in biomethane by injection into the network. For each of the"standard models" we compared the techno-economic viability of the models according to different "recipes" of biomass. The evaluation points out that for each "standard model" there is a limited number of "recipes" allowing each of them to find a technoeconomic balance.Finally, we focused on the nitrogen and fuel autonomy that an agricultural operationcould achieve by methanising dedicated energy crops of legumes. The assessment was conducted on farms with different rotational and yield configurations. We have highlighted the conditions necessary for each farm configuration to achieve autonomy.It shows that under certain conditions, an "autonomous" farm has gross margins higher than that of a conventional farm.

Le changement climatique entraîne un changement profond des régimes thermiques qui a des conséquences importantes sur la croissance des plantes. Toutefois, les effets des températures extrêmes ont été peu étudiés chez espèces fourragères pérennes, et ne sont pas intégrés dans les modèles actuels de prairie. Or ces modèles ont un rôle central à jouer dans le développement de stratégies d'adaptation au changement climatique. Dans ce contexte, cette thèse a cherché à approfondir la compréhension de la réponse de la luzerne et de la fétuque élevée à une large gamme de températures et à améliorer la prise en compte de ces réponses dans le modèle STICS. Un volet de travail expérimental en conditions contrôlées n'a pas permis de mettre en évidence de différences de réponses entre génotypes d'origine contrastées (tempéré/Méditerranéen) pour différents processus de croissance et de développement des deux espèces. En revanche, il est apparu des différences significatives entre les réponses normalisées de différents processus ; l'allongement des tiges en particulier se distinguant nettement des autres processus chez la luzerne. La réponse de la photosynthèse à la température a montré une forte acclimatation à la température de croissance, aussi bien pour des génotypes d'origine tempérée que méditerranéenne. Ces derniers sont apparus plus sensibles aux températures élevées du fait d'une désactivation de la RUBISCO. La modification des formalismes de réponse à la température de la croissance et du développement dans STICS (fonction non linéaire, pas de temps) a eu un fort impact sur le cumul de temps thermique pour des scénarios climatiques « futurs ». Toutefois, du fait de l'effet majoritaire d'autres stress conjoints durant les périodes de stress thermique et d'une rapide saturation du rayonnement intercepté, l'impact sur les projections de production fourragère s'est avéré limité pour les conditions testées. Au total ces résultats suggèrent que les productions fourragères pourraient être moins exposées au stress thermique que les cultures annuelles. / Due to climate change, the global average temperature is expected to rise with marked impacts on crop growth. However, extreme temperature's impacts on perennial herbaceous species have received much less attention to date than other crops and aren’t currently implemented in grassland models. Yet, grassland models have a major role to play in defining adaptation options to global warming’s impacts on agriculture. In this context, our aims were to characterise the responses to temperature of two major perennial forage species over a large range of growth temperature and to improve the temperature response formalisms in the STICS model. First, experiment conducted in growth chambers indicated that the responses of normalized developmental rates did not differ between genotypes from contrasting thermal areas (Mediterranean/temperate) within each species. On the other hand, the responses to temperature of normalised rates differed significantly between several of the physiological processes studied; in particular stem elongation rate differed from other developmental rates in alfalfa. Irrespective of cultivar origin, a remarkable acclimation of photosynthesis to growth temperature was observed. Mediterranean genotypes displayed a greater sensitivity of the maximum rate of Rubisco carboxylation to elevated temperatures. Modifications of temperature formalism in the STICS crop model (implementation of nonlinear response, hourly/daily step of response) had a significant impact on thermal time accumulation and crop development for future climate scenarios. However, due to larger effects of water stress and to saturation of radiation interception, impacts on projections of grassland dry matter production were limited. This result suggests that grassland production could be less exposed to thermal stress than annual crops.

162 leaves printed on single pages, preliminary pages i- vii and numbered pages 1-152. Includes bibliography and abbreviations. / Digitized at 600 dpi grayscale to pdf format (OCR), using a Bizhub 250 Konica Minolta Scanner. / Thesis (PhD(Agric))--University of Stellenbosch, 2000. / ENGLISH ABSTRACT: Maize, forage sorghum, lucerne, oats, barley and triticale are the most common silage crops in South Africa, while tropical grasses like Eragrostis curvula and Digitaria eriantha are ensiled to a lesser extent. The aim of this study was to determine the effect of adding a lactic acid bacterial inoculant to E. curvula, D. eriantha, lucerne, forage sorghum, maize and oat silage. The effect of the addition of a lactic acid bacterial inoculant when ensiling E. curvula on the fermentation dynamics during ensiling and the aerobic stability of the silage was determined. The addition of the lactic acid bacterial inoculant to E. curvula at ensiling resulted in a more rapid lowering in pH and improved preservation. Inoculated silage had a higher lactic acid content, less protein breakdown and a lower butyric acid content compared to that of the control silage. Both silages were stable when exposed to air for five days. Digitaria eriantha was ensiled, with or without the addition of a lactic acid bacterial inoculant containing Lactobacillus plantarum. Streptococcus faecium and Pediococcus acidilactici together with the enzymes, cellulase, hemicellulase and amylase. The addition of the inoculant resulted in a more rapid drop in pH, a higher level of lactic acid, an increase in the number of lactic acid bacteria, less protein breakdown and lower numbers of enterobacteria, clostridial spores, yeast and mould compared to the control silage. Digitaria eriantha hay, control and inoculated silage diets were fed to 24 Merino rams (n = 8 per treatment) to determine intake and digestibility. The intake of diets consisting of 90.9% D. eriantha hay, control silage or inoculated silage, differed significantly (p<0.05) at 1395, 1540 and 1848 g DM/day, respectively. The in vivo organic matter digestibility (glkg) of D. eriantha hay, untreated silage and inoculated silage diets was 561, 546, 574, respectively. The addition of the bacterial inoculant when ensiling D.eriantha resulted in better preservation, improved aerobic stability, as well as a higher in vivo organic matter digestibility and intake of D. eriantha silage. The addition of an inoculant or molasses to lucerne (Medicago sativa), ensiled in laboratory silos was investigated. The addition of the additives resulted in an increased preservation rate as indicated by a more rapid lowering of pH, a faster rate of lactic acid production and less protein breakdown compared to control silage. The inoculant was more effective than the molasses in improving the rate of preservation. The aerobic stability of lucerne silage was not affected by inoculation or the addition of molasses. The addition of an inoculant to wilted big bale lucerne silage was studied. The inoculant improved silage quality as indicated by a lower pH, higher lactic acid content, lower ammonia nitrogen content and lower level of butyric acid in inoculated silage compared to the control lucerne silage. The composition of big round bale lucerne silage differed markedly from that of lucerne ensiled in laboratory silos as the former had a higher pH, ammonia nitrogen, butyric acid and acetic acid content and a lower lactic content. Whole crop forage sorghum cultivar FS2 was harvested at the late bloom (20.7% DM) and soft dough (28.9% DM) stages of maturity and ensiled in laboratory silos with the addition of commercial silage inoculants. At both stages of maturity the inoculants caused a more rapid rate of pH decline and a higher amount of lactic acid production. All the silages were well preserved. Silages of the sorghum ensiled at the late bloom stage with all treatments were stable after 5 days of aerobic exposure, whereas sorghum ensiled at the soft dough stage with the addition of the inoculants deteriorated upon aerobic exposure. It is concluded that addition of lactic acid bacterial inoculants to mature sorghum at ensiling might impair the aerobic stability of the silage. The yield, nutritional value and production potential of silage made from twenty one maize hybrids was compared. It was concluded that maize hybrids did differ in metabolizable energy content, rate of digestion, predicted intake and predicted milk production potential. The content of NDF and ADF did not differ between the maize hybrids used in this study and could therefore not be used to predict nutritional value or production potential. Maize was harvested at the hard dough stage and ensiled with or without the addition of a lactic acid bacterial inoculant in laboratory silos and in 210 litre drums. The adding of the inoculant to maize at ensiling did not result in a more rapid drop in pH and higher levels of lactic acid. The intake and growth of South African Mutton Merino lambs fed inoculated and untreated maize silage diets was determined. The average daily gain of lambs fed a diet consisting of either 60% control or inoculated maize silage over a growth period of 60 days was 239 ± 26 and 255 ± 44 g/day, respectively. Although the laboratory study showed very little effect of adding a lactic acid bacterial inoculant to maize at ensiling, lambs tended to consume more of the inoculated silage. In the second study the effect of the addition of a lactic acid bacterial inoculant with an enzyme to maize at ensiling on the fermentation dynamics during ensiling, aerobic stability of the silage, the intake, milk production and milk composition of Jersey cows fed maize silage diets was determined. The inoculant did not result in a more rapid lowering of the pH or a more rapid lactic acid production compared to untreated maize silage made in laboratory silos. Both the control and inoculated maize silages were well preserved. The addition of the inoculant to maize at ensiling improved the palatability, intake and the aerobic stability of maize silage compared to the untreated control maize silage. Milk production, milk composition, live weight and condition score of Jersey cows was not significantly affected by the addition of the inoculant to maize silage. The effect of the addition of an enzyme containing lactic acid bacterial inoculant to big bale oat (Avena sativa, cv Cederberg) silage on silage composition, silage intake, milk production and milk composition of Jersey cows was determined. The crop was cut at the bloom stage, wilted and ensiled in big round bales. The inoculant, Sil-All, was applied during the baling process on half of the bales. Silages were fed to Jersey cows in an intake and milk production study. Both the control and inoculated oat silages were well preserved. The inoculated oat silage had a lower level of butyric acid than the control oat silage. Cows fed the inoculated oat silage produced more (P=O.05) milk (17.7 kg/day) than cows fed the control oat silage (16.7 kg/day). The addition of a lactic acid bacterial inoculant to big bale oat silage improved silage composition and animal performance. This study clearly showed that the composition of silages made in bunker silos under commercial farm conditions differ largely from that of silages made in small scale laboratory silos. When the effect of silage additives on aerobic stability of silage is determined the evaluation should include studies on large scale bunker silages. Evaluation of silage additives should include intake and animal production studies. / AFRIKAANSE OPSOMMING: Mielies, voersorghum, lusem, hawer, gars en korog word algemeen as kuilvoer gewasse benut terwyl tropiese grasse soos Eragrostis curvula en Digitaria eriantha tot 'n mindere mate ingekuil word. Die doel van hierdie studie was om die invloed van 'n melksuurbakterieseinokulant op E. curvula-, D. eriantha-, lusem-, voersorghum-, mielie- en hawerkuilvoer te bepaal. Die invloed van 'n melksuurbakteriese-inokulant op die fermentasiedinamika en die aerobiese stabiliteit van E. curvula-kuilvoer is bepaal. Die toediening van die melksuurbakterieseinokulant tot E. curvula tydens inkuiling het 'n vinniger tempo van pH daling en beter preservering tot gevolg gehad in vergelyking met kontrole kuilvoer. Inokulant behandelde kuilvoer het 'n hoer melksuurinhoud, minder protei'en afbraak en 'n laer bottersuurinhoud as kontrole kuilvoer gehad. Beide kuilvoere was stabiel tydens blootstelling aan lug vir vyf dae. Digitaria eriantha is ingekuil met ofsonder die toediening van 'n melksuurbakteriese-inokulant wat Lactobacillus plantarum. Streptococcus faecium en Pediococcus acidilactici sowel as die ensieme, sellulase, hemisellulase and amilase bevat het. Die inokulant het 'n vinniger tempo van pH-daling, hoer vlakke van melksuur en melksuurbakterie, minder protei'en afbraak en laer getalle van enterobakterie, klostridiale spore, giste and swamme in vergelyking met die kontrole tot gevolg gehad. Digitaria eriantha hooi, kontrole kuilvoer en gei'nokuleerde kuilvoer diete is aan 24 Merino ramme (n = 8 per behandeling) gevoer vir bepaling van inname en verteerbaarheid. Die inname van diete wat uit 90.9% D. eriantha hooi, kontrole kuilvoer of gei'nokuleerde kuilvoer bestaan het, het betekenisvol (p<0.05) verskil en was 1395, 1540 en 1848 gDM/dag, respektiewelik. Die in vivo organiesemateriaal verteerbaarheid (gIkg) vanD. eriantha hooi, kontrole kuilvoer en geYnokuleerde kuilvoer was 561, 546, 574, respektiewelik. Die toediening van die bakteriese-inokulant tydens inkuiling vanD. eriantha het beter preservering, verbeterde aerobiese stabiliteit asook 'n hoer in vivo organiesemateriaal verteerbaarheid van D. eriantha kuilvoer tot gevolg gehad. Die effek van toediening van 'n melksuurbakteriese-inokulant en van molasse tot lusem (Medicago sativa) ingekuil in laboratoriumsilos is ondersoek. Die inokulant toediening en molasse toediening het die tempo van preservering versnel, die pH het vinniger gedaal, melksuur is teen 'n hoer tempo geproduseer en minder proteYen afbraak het plaasgevind in vergelyking met die kontrole kuilvoer. Die tempo van preservering is meer effektief deur toediening van die inokulant verhoog as deur die toediening van molasse. Die aerobiese stabiliteit van lusernkuilvoer is nie beYnvloed deur die toediening van inokulant ofmolasse nie. Die effek van die toediening van 'n melksuurbakteriese-inokulant tot groot rondebaal lusernkuilvoer is ondersoek. Die inokulant het die kwaliteit van die kuilvoer verbeter en het 'n laer pH, hoer melksuur, laer ammoniak stikstofen laer bottersuurinhoud in rondebaallusernkuilvoer tot gevolg gehad in vergelyking met kontrole kuilvoer. Groot rondebaallusernkuilvoer het grootliks verskil van lusernkuilvoer wat in laboratoriumsilos ingekuil is. Die rondebaal kuilvoer het 'n hoer pH, hoer ammoniak-stikstof-, bottersuur- en asynsuurinhoud en 'n laer melksuurinhoud gehad as laboratorium lusernkuilvoer. Voersorghum kultivar FS2 is op die laat blom (20.7% DM) en op die sagte deeg (28.9% DM) stadium met die byvoeging van melksuurbakteriese-inokulante ingekuil in laboratoriumsilos. Toediening van beide inokulante tot sorghum hetop beide die inkuilstadiums gelei tot 'n vinniger tempo van pHdaling en meer melksuurproduksie. Aile kuilvoere insluitend die kontrole kuilvoer was goed gepreserveer. Kontrole sowel geYnokuleerde sorghumkuilvoer ingekuil op die laat blomstadium was stabiel tydens aerobiese blootstelling vir 5 dae. Sorghumkuilvoer ingekuil op die sagtedeegstadium met die byvoeging van inokulante was onstabiel tydens aerobiese blootstelling. Die toediening van melksuurbakteriese-inokulante tot sorghum wat op die sagtedeegstadium ingekuil word kan aerobiese stabiliteit van die kuilvoer grootliks benadeel. Die opbrengs, voedingswaarde en produksiepotensiaal van kuilvoer gemaak van 21 mielie hibriede is vergelyk. Verskille in metaboliseerbare energie inhoud, tempo van vertering, voorspelde inname en voorspelde melkproduksie het tussen mielie hibriede voorgekom. Die neutraalbestandevesel- en suurbestandeveselinhoud het nie verskil tussen hibriede nie en derhalwe kon dit nie gebruik word om voedingswaarde ofproduksiepotensiaal te beraam rue. Mielies is op die hardedeegstadium met of sonder die toediening van 'n melksuurbakterieseinokulant in laboratoriumsilos en 210 liter dromme ingekui!. Die toediening van die inokulant het geen invloed op tempo van pH-daling ofproduksie van melksuur gehad nie. Die inname en groei van SA Vleismerino lammers wat 'n dieet bestaande uit 60% kontrole of inokulant behandelde mieliekuilvoer ontvang het, is bepaa!. Die gemiddelde daaglikse toename van lammers was 239 ± 26 and 255 ± 44 g/dag vir die kontrole en inokulant mieliekuilvoer dieet respektiewelik. Alhoewel die laboratoriumstudie weinig verskille tussen die kontrole en die geYnokuleerde mieliekuilvoer getoon het, het lammers geneig om meer van die geYnokuleerde mieliekuilvoer in te neem. In die tweede studie met mieliekuilvoer is die effek van toediening van 'n melksuurbakteriese-inokulant met ensieme, op die ferrnentasiedinamika tydens inkuiling, die aerobiese stabiliteit van mieliekuilvoer asook die inname, melkproduksie en melksamestelling van Jersey koeie bepaa!. Die inokulant het nie die tempo van pH daling en produksie van melksuurverhoog nie en beide kontrole en geYnokuleerde mieliekuilvoerwas goed gepreserveer. Die toediening van die inokulant tot mieliekuilvoer het die smaaklikheid, inname en die aerobiese stabiliteit van mieliekuilvoer verhoog in vergeiyking met kontrole mieliekuilvoer. Melkproduksie, melksamestelling, liggaamsmassa en kondisiepunt van Jersey koeie is nie betekenisvol beYnvloed deur die toediening van die inokulant tot mieliekuilvoer nie. Die effek van die toediening van 'n ensiem bevattende melksuurbakteriese-inokulant tot groot rondebaal hawer (Avena sativa, cv Cederberg) kuilvoer op die samestelling van kuilvoer, kuilvoerinname, melkproduksie en melksamestelling van Jersey koeie is bepaa!. Die gewas is gesny op die blomstadium, verwelk en as rondebaalkuilvoer gepreserveer. Die inokulant, Sil-All, is tydens die baalproses toegedien op die helfte van die bale. Kuilvoere is aan Jersey koeie gevoer in 'n inname en melkproduksiestudie. Beide die kontrole en geYnokuleerde hawerkuilvoer was goed gepreserveer. Die bottersuurinhoud van geYnokuleerde hawerkuilvoer was laer as die van die kontrole hawerkuilvoer. Koeie wat geYnokuleerde hawerkuilvoer gevoer is het meer (P=0.05) melk (17.7 kg/dag) geproduseer as koeie wat kontrole hawerkuilvoer ontvang het (16.7 kg/dag). Die toediening van 'n melksuurbakteriese-inokulant het kuilvoer kwaliteit en diereproduksie verbeter. Hierdie studie wys duidelike verskille uit tussen kuilvoer wat in bunkersilos onder kommersiele toestande ingekuil is, en kuilvoer wat in laboratoriumsilos gemaak is. Wanneer die effek van kuilvoerbymiddels op die aerobiese stabiliteit van kuilvoer bepaal word behoort finale evaluasie gedoen te word op kuilvoer gemaak in bunkersilos soos onder plaastoestande plaasvind. Evaluasie van kuilvoerbymiddels behoort inname en diereproduksiestudies in te sluit.

The Tasmanian lacewing (Micromus tasmaniae Walker) is one of the most common aphid predators occurring in lucerne crops in New Zealand. A comparison of sampling techniques, and the output from a simulation model, suggest that the abundance of this lacewing may have been significantly underestimated in the past. Although the occurrence of aphid predators was erratic M. tasmaniae occurred more often and in far greater numbers (up to 100 m⁻²) than any other predator species. A simulation model for lacewing development in the field indicated that the large adult populations which occurred could be accounted for on the basis of reproductive recruitment. Independent evidence that immigration was not involved in the occurrence of these large populations was gathered using directional flight traps around the field perimeter. The major factors influencing lacewing population dynamics were the availability of aphid prey and, in the autumn, parasitism. Otherwise, survival of all life-histoty stages was high with no evidence of egg or larval cannibalism. Several instances of high lacewing mortality were identified by the model and the lack of any obvious cause for these highlights inadequacies in the understanding of lacewing bionomics. The model, which used a linear relationship (day-degrees) between development and temperature, was incapable of accurately predicting lacewing emergence under field temperatures which fluctuated outside the linear region of the development rate curve. Temperature thresholds and thermal requirements estimated under fluctuating temperatures similar to those in the field produced almost identical model output to those estimated under constant temperatures in the laboratory. Prey species was capable of influencing the rate of lacewing development. M. tasmaniae has the attributes necessary to produce large populations in the short time available between lucerne harvests. The asymptote of the functional response curve is low but the efficiency at converting aphids to eggs is high. Therefore, the lacewing is able to attain maximun reproductive output at low prey densities. A low temperature threshold for development (4-5° C), rapid development and short preoviposition period results in a short generation time (49 days at 15° C). Long adult life, high fecundity and the absence of any form of estivation or diapause, results in complete overlap of generations and multiple generations per year. M. tasmaniae's role as an aphid predator is restricted by its low appetite for prey and by the lucerne management regime currently practiced in New Zealand. Because it consumes relatively few aphids per day the lacewing's ability to destroy large aphid populations is limited. However, this may be offset by its ability to attack aphids early in the aphid population growth phase, and by the large numbers of lacewings which may occur. Under the present lucerne management schemes the large lacewing populations which do occur are forced out of the fields, or die, following harvest. A number of management options for increasing the lacewings impact as an aphid predator are briefly discussed.

The general goal of this research was to understand the agronomic and physiological changes of a lucerne crop in distinct physical radiation environments and to verify the potential of lucerne to grow under shaded conditions. To achieve this, the research was conducted in four main steps: (i) firstly, experimental data collection in the field using two artificial shade materials (shade cloth and wooden slats) under inigated and non-irrigated conditions; (ii) a second experiment with data collection in a typical temperate dryland agroforestry area under non-irrigated conditions; (iii) generation of a light interception sub-model suitable for shaded crops and (iv) a linkage between the light interception sub-model and a canopy photosynthesis model for agroforestry use. In experiments 1 and 2, lucerne crop was exposed to 6 different light regimes: full sunlight (FS), shade cloth (FS+CL), wooden slats (FS+SL), trees (T), trees+cloth (T +CL) and trees+slats (T+SL). The FS+SL structure produced a physical radiation environment (radiation transmission, radiation periodicity and spectral composition) that was similar to that observed in the agroforestry site (f). The mean annual photosynthetic photon flux density (PPFD) was 41 % under the FS+CL, 44% under FS+SL and 48% under T compared with FS in clear sky conditions. Plants were exposed to an intermittent (sun/shade) regime under both FS+SL and T, whereas under FS+CL the shaded light regime was continuous. The red to far-red (RIFR) ratio measured during the shade period under the slats was 0.74 and under the trees was 0.64. However, R/FR ratio increased to 1.26 and 1.23 during the illuminated period under FS+SL and T, respectively, and these were equivalent to the ratio of 1.28 observed under the FS+CL and 1.31 in FS. The radiation use efficiency (RUE) of shoots increased under the 5 shaded treatments compared with full sunlight. The pattern of radiation interception was unchanged by radiation flux, periodicity and spectral composition and all treatments had a mean extinction coefficient of 0.82. However, the magnitude of the decrease in canopy growth was less than those in PPFD transmissivity. The mean lucerne annual dry matter (DM) yield was 17.5 t ha⁻¹ in FS and 10 t ha⁻¹ under the FS+CL, FS+SL and T regimes. This declined to 3.4 t DM ha⁻¹ under T+CL (22% PPFD transmissvity) and 4.1 t DM ha⁻¹ under T+SL (23% transmissivity). A similar pattern of response was observed for leaf net photosynthesis (Pn) rates under the shade treatments compared with full sun. In addition, spectral changes observed under the trees and slats affected plant motphology by increasing the number of long stems, stem height and internode length compared with full sunlight. Thus, there were two main explanations for the increase in RUE under shade compared with full sun: (i) preferential partition of assimilates to shoot rather than root growth and/or (ii) leaves under shade were still operating at an efficient part of the photosynthetic light curve. The changes proposed for the canopy Pn model were appropriate to simulate the radiation environment of an agroforestry system. However, the model underestimated DM yields under the continuous and intermittent shade regimes. These were considered to be mainly associated with plant factors, such as overestimation in maintenance respiration and partitioning between shoots and roots in shade and the intermittency light effect on leaf Pn rates. Further investigation in these topics must be addressed to accurately predict crop yield in agroforestry areas. Overall, the lucerne crop responded typically as a sun-adapted plant under shade. It was concluded that lucerne yield potential to grow under intermediate shade was superior to most of C3 pastures previously promoted in the literature.

The annual and seasonal water use efficiency of six pasture combinations were calculated from the ‘MaxClover’ Grazing Experiment at Lincoln University. Pastures have been established for six years and are grazed by best management practices for each combination. Measurements for this study are from individual plots of four replicates of ryegrass (RG)/white clover (Wc), cocksfoot (CF)/Wc; CF/balansa (Bal) clover; CF/Caucasian (Cc) clover; CF/subterranean (Sub) clover or lucerne. Water extraction measurements showed soils for all dryland pastures had a similar plant available water content of 280±19.8 mm. Dry matter measurements of yield, botanical composition and herbage quality were assessed from 1 July 2008 until 30 June 2009. Lucerne had the highest annual yield of 14260 kg DM/ha/y followed by the CF/Sub at 9390 kg DM/ha/y and the other grass based pastures at ≤ 6900 kg DM/ha/y. All pastures used about 670±24.4 mm/y of water for growth. Lucerne had the highest annual water use efficiency (WUE) of 21 kg DM/ha/mm/y of water used (total yield/total WU). The WUE of CF/Sub was the second highest at 15 kg DM/ha/mm/y, and the lowest was CF/Wc at 9 kg DM/ha/mm/y. The CF/Sub pastures had the highest total legume content of all grass based pastures at 21% and as a consequence had the highest annual nitrogen yield of 190 kg N/ha. This was lower than the monoculture of lucerne (470 kg N/ha). Ryegrass/white clover had the highest total weed component in all pastures of 61%. For dryland farmers spring is vital for animal production when soil temperatures are rising and moisture levels are high. The water use efficiency at this time is important to maximize pasture production. In spring lucerne produced 8730 kg DM/ha, which was the highest dry matter yield of all pastures. The CF/Sub produced the second highest yield of 6100 kg/DM/ha. When calculated against thermal time, CF/Sub grew 5.9 kg DM/ºCd compared with lucerne at 4.9 kg DM/ºCd. The higher DM yield from lucerne was from an extra 400 ºCd of growth. The highest seasonal WUE of all pastures occurred in the spring growing period. Linear regressions forced through the origin, showed lucerne (1/7/08-4/12/08) had a WUE of 30 kg DM/ha/mm (R2=0.98). Of the grass based pastures, CF/Sub produced 18 kg DM/ha/mm (R2=0.98) from 1/7 to 10/11/08 from 270 mm of water used. The lowest spring WUE was 13.5 kg DM/ha/mm by CF/Bal pastures which was comparable to the 14.3±1.42 kg DM/ha/mm WUE of CF/Wc, CF/Cc and RG/Wc pastures. During the spring, CF/Sub clover had the highest spring legume component of the grass based pastures at 42% and produced 120 kg N/ha. This was lower than the 288 kg N/ha from the monoculture of lucerne. Sub clover was the most successful clover which persisted with the cocksfoot. Based on the results from this study dryland farmers should be encouraged to maximize the potential of lucerne on farm, use cocksfoot as the main grass species for persistence, rather than perennial ryegrass, and use subterranean clover as the main legume species in cocksfoot based pastures. By increasing the proportion of legume grown the water use efficiency of a pasture can be improved. When pastures are nitrogen deficient the use of inorganic nitrogen may also improve pasture yields particularly in spring.

The general goal of this research was to understand the agronomic and physiological changes of a lucerne crop in distinct physical radiation environments and to verify the potential of lucerne to grow under shaded conditions. To achieve this, the research was conducted in four main steps: (i) firstly, experimental data collection in the field using two artificial shade materials (shade cloth and wooden slats) under inigated and non-irrigated conditions; (ii) a second experiment with data collection in a typical temperate dryland agroforestry area under non-irrigated conditions; (iii) generation of a light interception sub-model suitable for shaded crops and (iv) a linkage between the light interception sub-model and a canopy photosynthesis model for agroforestry use. In experiments 1 and 2, lucerne crop was exposed to 6 different light regimes: full sunlight (FS), shade cloth (FS+CL), wooden slats (FS+SL), trees (T), trees+cloth (T +CL) and trees+slats (T+SL). The FS+SL structure produced a physical radiation environment (radiation transmission, radiation periodicity and spectral composition) that was similar to that observed in the agroforestry site (f). The mean annual photosynthetic photon flux density (PPFD) was 41 % under the FS+CL, 44% under FS+SL and 48% under T compared with FS in clear sky conditions. Plants were exposed to an intermittent (sun/shade) regime under both FS+SL and T, whereas under FS+CL the shaded light regime was continuous. The red to far-red (RIFR) ratio measured during the shade period under the slats was 0.74 and under the trees was 0.64. However, R/FR ratio increased to 1.26 and 1.23 during the illuminated period under FS+SL and T, respectively, and these were equivalent to the ratio of 1.28 observed under the FS+CL and 1.31 in FS. The radiation use efficiency (RUE) of shoots increased under the 5 shaded treatments compared with full sunlight. The pattern of radiation interception was unchanged by radiation flux, periodicity and spectral composition and all treatments had a mean extinction coefficient of 0.82. However, the magnitude of the decrease in canopy growth was less than those in PPFD transmissivity. The mean lucerne annual dry matter (DM) yield was 17.5 t ha⁻¹ in FS and 10 t ha⁻¹ under the FS+CL, FS+SL and T regimes. This declined to 3.4 t DM ha⁻¹ under T+CL (22% PPFD transmissvity) and 4.1 t DM ha⁻¹ under T+SL (23% transmissivity). A similar pattern of response was observed for leaf net photosynthesis (Pn) rates under the shade treatments compared with full sun. In addition, spectral changes observed under the trees and slats affected plant motphology by increasing the number of long stems, stem height and internode length compared with full sunlight. Thus, there were two main explanations for the increase in RUE under shade compared with full sun: (i) preferential partition of assimilates to shoot rather than root growth and/or (ii) leaves under shade were still operating at an efficient part of the photosynthetic light curve. The changes proposed for the canopy Pn model were appropriate to simulate the radiation environment of an agroforestry system. However, the model underestimated DM yields under the continuous and intermittent shade regimes. These were considered to be mainly associated with plant factors, such as overestimation in maintenance respiration and partitioning between shoots and roots in shade and the intermittency light effect on leaf Pn rates. Further investigation in these topics must be addressed to accurately predict crop yield in agroforestry areas. Overall, the lucerne crop responded typically as a sun-adapted plant under shade. It was concluded that lucerne yield potential to grow under intermediate shade was superior to most of C3 pastures previously promoted in the literature.

This thesis compares the in situ water balance of common annual production systems (wheat, lupin, subclover and serradella) with a grazed perennial system (lucerne) at a site in the Avon Catchment, Western Australia. Using a physically-based water balance approach the value of a plant based solution in redressing the hydrological imbalance that has become a feature of much of the dryland agricultural region of Western Australia is investigated. The effectiveness of lucerne in providing greater available storage for buffering large rainfall events, as compared to the annual systems, is illustrated. Continued transpiration following out-of-season rainfall events maintains a larger available storage capacity. In contrast, the annual systems that are fallow over summer only withdrew a small fraction of water by soil evaporation between rainfall events. Under annual systems, the profile moisture store was sequentially increased to the extent that additional increments of rainfall could potentially contribute to deep drainage. A particular focus of this study has been to investigate the presence of soil constraints to root growth, and to assess how these constraints affect the water balance. A site survey indicated the soil penetration resistance was sufficient to impose a physical constraint to root growth. Published literature on the site shows soil acidity is also at a level imposing chemical constraints to root growth. A root growth model “Rootmodel”, for predicting root growth with and without soil constraints is examined in detail as a method for providing root growth parameters for inclusion into the numerical water balance model, SWIM based on Richard’s equation. Functions developed from “Rootmodel” adequately describe the effect of profile limitations to root growth, such as soil strength, moisture availability and temperature. Recommendations are made for inclusion of a growth suppressing function in “rootmodel” based on the chemical limitation of low pH. The effects of soil acidity on the root growth of several species is investigated experimentally and the resultant root data provided a reference point by which the simplified prediction of root growth built into SWIM could be adjusted using a linear reduction function. A similar linear reduction function is also employed to impose a physical constraint in the form of high penetration resistance.

[Truncated abstract] Industrial processing to refine alumina from bauxite ore produces millions of tonnes of refining residue each year in Australia. Revegetation of bauxite residue sand (BRS) is problematic for a number of reasons. Harsh chemical conditions caused by residual NaOH from ore digestion mean plants must overcome extremely high pH (initially >12), saline and sodic conditions. At such high pH, manganese (Mn) is rapidly oxidised from Mn2+ to Mn4+. Plants can take up only Mn2+. Thus, Mn deficiency is common in plants used for direct BRS revegetation, and broadcast Mn fertilisers have low residual value. Added to this, physical conditions of low water-holding capacity and a highly compactable structure make BRS unfavourable for productive plant growth without constant and large inputs of water as well as Mn. However, environmental regulations stipulate that the residue disposal area at Pinjarra, Western Australia, be revegetated to conform with surrounding land uses. The major land use of the area is pasture for grazing stock. Hence, pasture revegetation with minimum requirement for fertiliser and water application is desirable. This thesis investigates a number of avenues with potential for maintaining a productive pasture system on BRS whilst reducing the current level of Mn fertiliser and irrigation input. Emphasis was placed on elucidation of chemical and physical factors affecting Mn availability to plants in BRS