Bibliography: pages 114-116. / This study is one of three based on grab samples of macrobenthos obtained before and at different times after mining for diamonds off the coast of Namibia. The first study dealt with multivariate clustering analysis of the first samples before and after mining. The second study focused on recovery times after mining and this study is aimed at estimating the amount of stress encountered by benthic communities, for comparision with the descriptive multivariate approach. Two research areas, classified as 'northern' and 'southern' were investigated. Data were aggregated and analysed at the genus level. Graphical and statistical analyses were conducted on the data which was classified in three ways. First, on all unmined sites from the two research areas together to test for natural site-to-site variability. Secondly and thirdly, each research area (north and south) was analysed separately to test for differences between unmined and mined sites at each area. Stress levels in the community were assessed by Caswell's neutral model (the Vstatistic) and by interpretation of the value of the W-statistic (a summary statistic of the ABC curves). Correlation techniques were applied to assess if there was any relationship between the diversity indices (as indicators of the influence of disturbance on community structure) on the one hand, and the environmental indicators of disturbance (percentage gravel, sand, mud) on the other.

Includes bibliographical references. / The aims of this study were to investigate elements of the demographics, fine-scale habitat use and site fidelity of sevengill sharks. The study was conducted at an aggregation hotspot within a Marine Protected Area, near Miller’s Point in False Bay, South Africa.

Includes bibliographical references / The mystique surrounding shipwrecks has intrigued man since the inception of sea travel itself. The wreck lies as a submerged time capsule, holding secrets of the past, patiently waiting to tell her stories, with rich rewards for archaeologists and salvors alike. Modern advances in underwater technology have supported a drastic increase in the discovery and retrieval of shipwrecks and their cargoes. Accompanying such advances are tensions which have emerged between interested parties in historic wrecks, the most notorious being between two broad interest groups; those who are attracted by the commercial value of such wrecks and those concerned to protect their historical and cultural value. This dissertation considers the viability of salvage law in the context of historic shipwrecks in South African waters.

Includes bibliographical references. / It has been shown that sardine and anchovy populations in the southern Benguela have alternated dominance during the past 50 years, and a frame based model that explores the usefulness of frames within a marine ecosystem by modelling sardine/anchovy dominance shifts in the southern Benguela has been developed in a previous study. The existing model contains a sardine population sub-model without age structure and the inclusion of age-structure allows age-related dynamics to be incorporated in the model design. In this mini-dissertation, an age-structured sardine population is implemented in the frame based model by using the sardine assessment model from the joint sardine/anchovy Operational Management Procedure, OMP-02. Methods for incorporating biological processes - such as the hypothesised school trap phenomena - that were present in the existing frame based model into the OMP-02 equations are developed, critically analysed and tested.

Bibliography: pages 107-121. / A Monte-Carlo type model has been developed to investigate the importance of passive transport by currents above the thermocline for anchovy recruitment off South Africa. Simulation studies indicate that mean year-class strength of Cape anchovy is relatively robust to altered advective processes off South Africa. This occurs despite the fact that changed flow alters the likelihood of offshore advection and hence losses of anchovy from the system. Two different approaches have been taken to address the effects of altered advection, and the applicability of each is discussed. One approach involves altering westward advection in proportion to the mean current field (derived from Acoustic Doppler Current Profiler measurements), and the other, altering westward and northward advection by the addition of fixed offshore current velocities. The proportional approach did not affect year-class strength significantly, whereas the other approach, which incorporated large changes in the flow field, yielded statistically significant differences in predicted year-class strengths between advection scenarios. Reduced flow in the latter approach led to a mean year-class strength 2.7 times stronger than a proposed base flow scenario (which incorporated westward and northward drift in addition to the ADCP currents), whereas enhanced flow resulted in a mean year-class strength of similar magnitude to that of the base flow scenario. Changed flow may alter the geographic distribution of eggs and larvae, which might in turn influence recruitment of young-of-the-year anchovy to the South African purse-seine fishery. The north-flowing shelf-edge jet current plays an important role in transporting anchovy eggs and larvae from spawning grounds in the south to nursery areas frn1her north along the west coast of South Africa. Enhanced model advection westward and norward from the spawning grounds in the south serves to transport anchovy into the region of the jet current. However, advection into unproductive waters offshore is also enhanced and prevents good recruitment under these flow conditions. On the other hand, reduced westward and northward advection in the model, shown through wind records to characterise El-Nino years in coastal areas of South Africa, serves to retain anchovy reproductive products and often transports young anchovy into coastal areas, preventing offshore loss. Therefore the advection model suggests that good year-class strengths (in terms of numbers) are likely to be supported in years when westward and northward advection are reduced. A further reduction in westward advection may be less favourable by causing advective losses offshore along the south coast of South Africa. This may be viewed in terms of an "optimal environmental window" hypothesis, where reduced westward advection is favourable for anchovy survival off South Africa, but further reduction of westward advection as well as enhanced westward advection appear unfavourable. It is concluded that although passive transport, of anchovy in South African waters is relatively robust, it may account for a substantial proportion of recruitment variability.

The parapagurids Sympagurus dimorphus (Studer, 1883) and Parapagurus bouvieri (Stebbing, 1910) dominate South African deeper-water benthic invertebrate communities. Samples from the 2016 DAFF bi-annual hake demersal research trawl surveys provided data on population structure and morphology. Since these species forego the use of "traditional" gastropod shells in favour of symbiotically-associated Epizoanthus pseudoshells, these data were also used to investigate parameters of pseudoshell association. S. dimorphus to have a female-biased sex ratio of 1:1.5, and P. bouvieri of 1:1. The proportion of males in both species increased with cephalothoracic shield (CL) length. S. dimorphus males had positive allometric major right chelipeds, while P. bouvieri cheliped lengths were positively allometric in males, and negatively allometric in females. All collected P. bouvieri occurred in pseudoshells, but S. dimorphus showed a real shell occupancy rate of 3.39% (n = 38). A positive relationship was found between CL size and real shell occupation frequency (r2 = 0.96). S. dimorphus pseudoshell zoanthid polyps increased in number as a function of both total shell volume (R2 = 0.73) and colony height (R2 = 0.61), with polyps present on every available part of the shell. No such relationship was found for P. bouvieri, presumably because the polyps are distributed in a linear pattern around the back and outside of the pseudoshell. Juvenile parapagurids appear to select for Naticidae original shells, with Euspira napus being the dominant original shell species for both S. dimorphus (45.45 %) and P. bouvieri (39.00 %). Questions are raised about whether these hermits exist along an evolutionary continuum of traditional shell reliance, whereby the species utilise their pseudoshells differently - P. bouvieri appears to show a stronger mutualistic symbiosis with its exclusive pseudoshell species than S. dimorphus, and may have lost the ability to change shelters entirely, utilising the pseudoshell as a brood pouch covering only the abdomen, rather than as a shell in which to retract to escape predation. Data from 1987 - 2014 surveys were used to map the distribution patterns and densities of these species in the southern Benguela, and to investigate changes in the populations over time. As it stands, no correction factor need be applied to South African parapagurid catches as a result of the 2003-2004 change in survey gear. However, further work is needed. S. dimorphus occurred at a significantly greater mean sample mass (287.88 kg.km⁻²) than P. bouvieri (31.37 kg.km⁻²). The bulk of sample mass occurred within the West Coast Benguela upwelling region, with very few parapagurids caught over the Agulhas Bank, which may be too shallow for either species, given that S. dimorphus showed a preferential depth range of 200 - 299 m (range 30 - 814 m) and P. bouvieri of 400 - 499 m (range 62 - 700 m). The highest mean sample masses occurred on muddy sand (61.00 kg.km⁻²) and sandy sediments (45.68 kg.km⁻²). Overall catchability (mean = 43.35%) has remained constant over the 23 years (R2 = 0.13) with a slight trend towards increasing catchability over time, which may correspond to a change in survey design.

Includes abstract. / Includes bibliographical references (p. 53-59). / In 2007 the local government of Rodrigues gazetted four marine reserves in the north of the island based on knowledge and insights from stakeholders, mainly from the fishing community. In order to verify the stakeholder-based design, a marine reserve network was designed using Marxan, a systematic conservation planning programme.

The presence of white sharks Carcharodon carcharias in False Bay, South Africa follows a clear seasonal cycle. In the austral winter months, white sharks aggregate around Seal Island with female sharks in particular moving to the inshore areas in summer. What triggers these fine scale migrations at one of the largest white shark aggregation sites in the world remains a subject of debate. Previous research identified the environmental variables, water temperature and lunar phase, as significant influences on white shark presence inshore. In this study, I attempt to investigate the influence of prey fish availability on the presence of white sharks at two inshore areas of False Bay, namely Muizenberg and Fish Hoek. In addition, I explored the influence of sea surface temperature (SST), El Niño/Southern Oscillation (ENSO), dolphin presence, diatom patch presence and the occurrence of purse-seine fishing (treknetting) on shark presence. A total of 1209 shark sightings were recorded from 1 January 2006 - 31 December 2015 with 742 sightings at Muizenberg and 467 at Fish Hoek. I used randomization tests to determine whether the occurrence of shark sightings was randomly distributed across the environmental and biological variables and determined the dependencies between the predictor variables. I confirmed that shark sightings were clearly seasonal and sightings peaked between 17.49 - 18.57°C. Fish presence revealed a similar peak at 17.94°C. Randomization tests indicate that a spotter is 66% more likely to detect a shark when fish are present, which supports my prediction of a prey mediated cue. The occurrence of treknetting was also found to be non-randomly linked to white shark presence, increasing the probability to spot a shark to 38% instead of 20% at random. The presence of diatom patches was found to be negatively correlated with SST; with numbers increasing in colder waters. The presence of dolphins, as other predators in False Bay, didn't show a significant pattern with any of the analysed variables. The influence of ENSO on the presence of white sharks was also hypothesized and the data revealed that there was a significant influence of weak negative ENSO values on their inshore occurrence. In addition to providing a better understanding of the ecology of white sharks in False Bay, my results can also be used in shark safety and education programs to reduce the risk of shark human conflict.

Includes bibliographical references. / The high latitude coral communities of southern Africa suffered minimal impacts during mass bleaching events in the recent past. However, during the 2005 warm-water anomaly in the southern Indian Ocean, coral bleaching reached unprecedented levels. There is surprisingly little known about the fate of bleached corals, which may either regain their zooxanthellae and recover, or may die, in which case they generally become overgrown by macroalgae. The nature and dynamics of this algal overgrowth are not well understood. This study was done on Two-Mile Reef, Sodwana Bay, located in the iSimangaliso Wetland Park, a World Heritage Site. The first aim was to investigate the abundance and diversity of benthic algal communities colonising different hard substrata (comprising bleached digitate, brain and plate coral assemblages, and beach rock). The second was to compare the algal communities colonising various artificial hard substrata. The third was to document the species of non-geniculate coralline red algae found on the natural hard substrata during sampling. Fieldwork was carried out during the marine autumn (March) and spring (September) of 2010 using SCUBA. A total of 90 quadrats (10 cm x 10 cm) were sampled and the underlying substratum was recorded and classified. A Braun-Blanquet scale was used to assign cover-abundance values to each species within each quadrat. Additionally, the relative cover of different types of substrata was estimated using line-point intercept methods. Multivariate analysis (detrended correspondence analysis) and cluster analysis (complete linkage Bray-Curtis) were used to show how substrata and season relate with respect to their seaweed flora. Additionally, Kruskal-Wallis nonparametric tests with pairwise Mann-WhitneyU-tests were used to examine differences in macroalgal assemblages among substratum types.

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