This corrigendum corrects an omission from the Acknowledgement section. The research leading to the results published in this manuscript was also supported by the project CALIPSOplus under Grant Agreement 730872 from the EU Framework Programme for Research and Innovation HORIZON 2020.

The synthesis and properties of novel Metal Organic Frameworks were investigated and reported in this thesis. Thirteen new materials have been synthesized and their properties have been discussed with nine of the structures being solved. The most interesting and useful MOF among the thirteen materials is STAM-1, a copper-based Metal Organic Framework in which the starting linker (Benzene-1,3,5-tricarboxylic acid) undergoes selective in situ monoesterification during the synthesis. The monoesterified BTC can be recovered easily from the MOF, opening up MOF synthesis as a “protection” tool for unexpected selectivity in preparative chemistry that is difficult to accomplish using standard organic chemistry approaches. The selective linker derivatisation leads to the formation of a porous MOF with two types of accessible channel; one hydrophilic lined by copper and the other hydrophobic, lined by the ester groups. The unique structure of the pores leads to unprecedented adsorption behaviour, which reacts differently to gases or vapours of dissimilar chemistry and allows them to access different parts of the structure. The structural flexibility of STAM-1 shows significant differences in the kinetics of O₂ and N₂ adsorption, showing potential for new materials to be developed for air separation. Having two types of channel systems, adsorption can be switched between the two channels by judicious choice of the conditions; a thermal trigger to open the hydrophilic channel and a chemical trigger to open the hydrophobic channel. The storage and release capability of NO in STAM-1 was investigated for use in biomedical applications. Successful studies showed the strength of the antibacterial effects of NO loaded STAM-1, by using three different bacterial strains as a test of performance and were found to be bactericidal. Furthermore the antibacterial effects of NO free STAM-1 were also probed and found to be bactericidal even with low concentrations of the material such as 5 wt%. STAM-1 showed some complex magnetic behaviour by displaying strong antiferromagnetic properties at room temperature and ferromagnetic properties at lower temperatures. The antiferromagnetic coupling was observed within the dimer and ferromagnetic coupling between the dimers. This property of ferromagnetism can only be attributed to the corporation of magnetic dimers in the framework. STAM-2 displays a different magnetic behaviour than STAM-1 which shows paramagnetic properties at room temperature and antiferromagnetic properties at lower temperatures. Other novel MOFs were also successfully characterised and their properties were investigated for potential applications.

Porous materials are essential to our everyday lives, for example as an effective catalyst in the cracking of crude oil, or as water softeners in washing powder. When developing novel functional porous materials, it is necessary to fully understand their structure-property relationships to maximise their ability to be used in industrially relevant settings. This thesis aims to understand the mechanical and adsorption properties of a class of porous solids metal-organic frameworks (or MOFs), which have many potential applications owing to their tuneable structures. Due to the inherent 3-D crystalline structure of MOFs, a wide range crystallographic techniques were used to determine structure-property relationships. To achieve maximum in-depth structural knowledge, both classical and quantum theoretical approaches were also applied to complement the understanding of both the energetics and structural details. Chapters One and Two begin with an overview of the state of the art studies carried out on MOFs, focusing on the use of high-pressure crystallography to understand their properties. In addition, there is emphasise on the importance of complementary computational methods that are used in the characterisation of MOFs. In Chapter Three, an isostructural series of MOFs (zeolitic imidazolate frameworks, or ZIFs) were studied for methanol adsorption by employing both experimental and molecular simulation techniques. These frameworks are gating materials, where the imidazole linker rotates upon adsorption of guest, and it was found that through ligand substitution the gate opening angle and onset pressure to gating could be tuned. By using high-pressure Xray crystallography the structure of the ZIFs were studied upon the uptake of guest and the degree of ring rotation quantified. In combination with periodic DFT and grand canonical Monte Carlo simulations the energy barrier to rotation and energies of adsorption could be calculated, respectively. Chapter Four focuses on one ZIF in particular, ZIF-8 ((Zn6(MeIm)12, MeIm = 2- methylimidazole) and details the adsorption of a selection of gases into the pores. The experimental method of cryogenic gas loading into a diamond anvil cell in this chapter is novel to MOFs. This method, in combination with molecular crystallography, is used to determine the structural response of the framework to guest-uptake as well as the crystallographic positions of the adsorption sites. In combination with in silico methods, the adsorption energies of guest-sites could be calculated, detailing which interactions drive the gating behaviour. The method of cryogenic loading highlighted how extreme conditions can be used to extract useful information about structural behaviour of MOFs on uptake of gas molecules into the pores, and when used in combination with computational methods, we have a powerful tool to analyse both positions and energies of adsorption sites. With this information, progress can be made in developing MOFs to maximize favourable interactions and lead to the development of MOFs with better selective gas storage properties. Chapter Five focuses on the synthesis and characterisation of the physical properties of a series of Zr-containing MOFs, called UiO-MOFs. The high valency of Zr(IV) and 12-fold coordination of the metal cluster in these materials, are associated with high shear and bulk moduli, which surpass those of other MOFs. A combination of single-crystal nano-indentation, high-pressure X-ray diffraction studies, density functional theory (DFT) calculations, and first-principles molecular dynamics (MD) simulations were used to determine the compressibility, elasticity and hardness of these materials, whose mechanical robustness was correlated to their different structural features, in-particular, how using non-linear linkers between the metal clusters stabilises the framework to compression. Chapter Six expands upon the series of Zr-MOFs in Chapter Five, and looks at how the mechanical properties of these MOFs are affected upon increasing the linker length. The experimentally determined elastics modulus of one of the frameworks, UiO-sdc (Zr6O4(OH)4(sdc)6 where sdc =4,4’-stillbene dicarboxylate), was found to lie above those of other highly porous MOFs. In addition, the elastic modulus was found to decrease linearly as a function of increasing the linker length, extending the structure-property relationships determined in Chapter Five.

The main objectives of this project are the synthesis and redox- or photo-active modification and CO2 adsorption studies of metal-organic frameworks (MOFs) based on Cu3-pyrazolate secondary building units (SBUs). Trinuclear copper(II) complexes of the formula [Cu3(µ3-O)(µ-4-R-pz)3X3]z have been studied extensively due to their redox, magnetic and catalytic properties. In earlier work, we have shown that trinuclear copper(II) complexes of the formula [Cu3(µ3-O)(µ-4-R-pz)3X3]z pz = pyrazolato anion; R = H, CH(O), Cl, Br and NO2; X = Cl, NCS, CH3COO, CF3COO and pyridine – can be oxidized to the corresponding z+1, formally CuII2CuIII, species. In this project, fourteen (14) new copper-pyrazolate complexes of varying nuclearities (Cu3, Cu6, Cu7 and Cu12), terminal ligands (-NO2, py, -N3, -Cl) and bridging ligands (4-Cl-pzH and 4-Ph-pzH) have been synthesized. Efforts have been made to prepare MOFs based on the Cu3(µ3-O)-SBUs. While attempting to design the most suitable SBU for redox-active MOF construction, it was found that the one-electron oxidation of the all-CuII complex [Cu3(µ3-O)(µ-pz)3(NO2)3]2–, [8]2-, was achieved at redox potential more cathodic than any other Cu3(µ3-O)-complexes studied in our laboratory. The mixed-valent compound, [Cu3(µ3-O)(µ-pz)3(NO2)3]–, [8]-, the easiest accessible CuII2CuIII species known to date, was characterized spectroscopically. Compound [8] and analogous [11] release NO almost quantitatively upon the addition of PhSH or acetic acid. The system is catalytic in the presence of excess nitrite. Before embarking on the study of photo-active MOFs, a simpler model compound – a dimer of trimer [{Cu3(µ3-OH)(µ-4-Cl-pz)3(py)2}2(µ-abp)](ClO4)4 [21], where abp = 4,4’-azopyridine, was synthesized and its photochemistry was studied. The absorption spectra recorded before and after irradiation indicated a structural change. Two dimensional (2D) and three dimensional (3D) materials with {[Cu3(µ3-OH)(µ-4-R-pz)3]2+}n SBUs where R = Ph or Cl , which can potentially undergo cis/trans-isomerization, have been prepared during this project. A Phenyl substituent at 4-position on the pyrazole ligand leads to the formation of new class of 2D sheets. Three new 3D porous MOFs based on {[Cu3(µ3-OH)(µ-4-Cl-pz)3]2+}n SBUs have interpenetrated- lattice structures and are capable of adsorbing CO2 selectively. Compounds FIU-1 and FIU-3 also exhibit hysteretic sorption-desorption profiles indicating the flexibility of the MOFs upon adsorption. Compound FIU-1 demonstrates the usefulness of a hexanuclear CuII -pyrazolate moiety as an SBU for generating 3-fold interpenetrated 3D polymeric network. Complexes FIU-2 and FIU-3 have novel 3-fold interpenetrating 3D hexagonal framework structures. Compound FIU-2 crystallizes in the monoclinic crystal system with the P21/c space group, whereas FIU-3 crystallizes in triclinic space group P . Both structures contain Cu3-SBUs connected by the linkers through the Cu-termini.

Mes travaux de thèse s'inscrivent dans le cadre de l'étude de l'adsorption de systèmes moléculaires confinés dans des matériaux nanoporeux. Le confinement d'un fluide a des effets importants sur ses propriétés thermodynamiques car la compétition entre les effets de la taille des pores et les effets d'interface engendre des comportements nouveaux très spécifiques, comme de nouvelles phases et de nouvelles transitions de phase. Ces phénomènes interviennent communément dans de nombreux processus et procédés industriels : échange ionique, séparations sélectives, catalyse hétérogène... En particulier, j'ai étudié par simulation moléculaire les propriétés d'adsorption de molécules polaires d'intérêt industriel (CO2 et H2O) dans une nouvelle classe de matériaux poreux cristallins hybrides organiques-inorganiques dénommés MOFs (Metal-Organic Frameworks). Il s'agit de systèmes avec des propriétés d'adsorption remarquables déterminées par leur variété topologique et versatilité dues à la richesse de la chimie organique et de coordination et au fait qu'ils peuvent être fonctionnalisés avant comme après synthèse. Dans un premier temps je me suis intéressée à l'adsorption du CO2 dans une famille de systèmes ayant tous la même topologie mais des volumes poreux différents, les IRMOFs. J'ai pu ainsi caractériser l'effet du confinement sur leur capacité d'adsorption et un comportement universel a été mis en évidence : la température critique diminue lorsque le confinement augmente. Ensuite, j'ai étudié une nouvelle MOF cationique dénommée Zn2(CBTACN). Après avoir réussi à localiser les anions halogénure extra-charpente (ce qui n'était pas possible expérimentalement), j'ai caractérisé l'adsorption du CO2 dans ce matériau, d'abord comme corps pur et ensuite dans des mélanges. Enfin, je me suis intéressée à la stabilité hydrothermique de ces matériaux, qui est une thématique cruciale pour les applications. En particulier, j'ai observé le mécanisme d'hydratation d'un analogue de la MOF-5 qui se fait en deux étapes. Des effets collaboratifs, qui n'avaient pas été soulignés jusqu'à présent dans la littérature, ont été également mis en évidence.

Metal-organic frameworks (MOFs) are porous networks of metal-centers connect by organic ligands, which have potential for an array of applications including gas separations and storage, drug delivery, and molecular sensing. A multitude of structures are reported with specific pore geometries and functionalities, but MOFs are not currently implemented in consumer or industrial applications. Two major setbacks have hindered their transition to the applied level. 1) Many MOFs are not stable in the presence of ambient moisture. 2) Most syntheses are costly and take place under batch-style solvothermal conditions. This thesis addresses both of these setbacks and examines the performance potential of water-stable MOFs for selective gas adsorption. A representative set of MOFs are exposed to water, and structural effects are monitored from a before and after comparison to identify properties of water-stable MOFs. A novel continuous-flow MOF synthesis process is reported along with preliminary optimization experiments, which yield direct suggestions for future process improvements. Batch-style scale-up experiments are also conducted for three other MOFs, which provide insight into synthesis phenomena. Application specific results are reported for toxic chemical filtration and carbon dioxide removal from flue gas using MOFs. The thesis concludes by summarizing the experimental findings, discussing the application potential of specific MOFs, and recommending topics for future research projects. Pitfalls observed during this research are also directly discussed along with potential solutions.

Metal-organic frameworks (MOFs) are a relatively new class of porous materials, assembled from inorganic metal nodes and organic ligands. MOFs have garnered significant attention in the porous materials and adsorption fields in recent years due to their various attractive features such as high surface areas and pore volumes, tunable and uniform pore sizes, chemically functionalized adsorption sites, and potential for post-synthetic modification. These features give MOFs enormous potential for use in applications such as air purification, methane and hydrogen storage, separations, catalysis, sensing, and drug delivery. Therefore, synthesis and adsorption studies of MOFs have increased tremendously in recent years. Among the aforesaid applications, air purification and air quality control are important topics because existing porous media are ineffective at the adsorptive removal of toxic industrial chemicals (TICs) and chemical warfare agents. Thus, there is a critical need for radical improvements in these purification systems. MOFs have shown great potential to become next-generation filter media as they outperform the traditional porous materials such as activated carbons and zeolites in the air purification of TICs such as ammonia and sulfur dioxide. In spite of the numerous desirable attributes of MOFs, the practical use of these new materials in most applications hinges on their stability in humid or aqueous environments. The sensitivity of certain MOFs under humid conditions is well known, but systematic studies of the water stability properties of MOFs are lacking. This information is critical for identifying structural factors that are important for development of next-generation, water stable MOFs. In addition to the water stability issue, difficulty in the scale up of MOF synthesis has also plagued MOFs. Hence, the goal of this Ph.D. dissertation research is to design ammonia-selective, water stable MOFs that can be synthesized on a large scale. This work will have a direct impact on moving the MOF field forward to the commercial level. To achieve the aforementioned goal, this Ph.D. dissertation research has been divided into following three objectives: (1) Advance our understanding of the water stability of MOFs and develop design criteria for the construction of water stable MOFs. (2) Design water stable, ammonia-selective MOFs for next-generation chemical, biological, radiological, and nuclear (CBRN) filter media. (3) Investigate the scale-up of the UiO-66 MOF scaffold. Through the research efforts over the past four years, it is discovered that it is possible to adjust the water stability of pillared MOFs in both positive and negative directions by proper shielding of the ligand via functional groups. This study is the first of its kind and is of high value for the MOF community. This shielding concept is further extended by synthesizing 4 novel isostructural MOFs with methyl functional groups at different positions on the ligand. For the first time, light is shed on the important distinction between kinetic and thermodynamic water stability and experimental evidence for a kinetically governed water stability mechanism in these MOFs is provided. It is also demonstrated that, using catenation in combination with a pillaring strategy, it is possible to obtain water stable MOFs even when the pillar ligand has lower basicity (pKa value). Ammonia breakthrough measurements have shown that a hydroxyl functionalized Zr-based UiO-66 material is promising as it could offer a method for targeting the removal of specific chemical threats in a chemically stable framework that does not degrade in the presence of water. Large scale synthesis of a water stable MOF, UiO-66, is studied using glass vials and Teflon lined autoclaves. UiO-66 synthesis methods have been refined such that it is now possible to produce more than 70 times the yield obtained from the original synthesis report using the same reaction volume. This would result in a significant reduction of the MOF production cost at the industrial scale. Methane and hydrogen are ‘clean fuels’ (less CO2 emissions than petroleum) and MOFs are being tested for their on-board storage in cars due to the extremely high storage capacities of MOFs being promising enough to meet the requirements. Hence, more broadly, this Ph.D. dissertation work will lead to commercial applications of MOFs, which can revolutionize a variety of gas separation and storage problems such as CO2 capture, natural gas upgrading, and methane and hydrogen storage for clean fuel technologies. This would greatly reduce the environmental concerns faced by our society today.

Es wurden verschiedene NMR-spektrokopische Messungen an flexiblen und chiralen MOFs durchgeführt. Zur Untersuchung der Porensysteme kamen 129Xe-NMR und 13C-NMR an adsorbiertem CO2 zum Einsatz, während die MOF-Gitter und ihre Wechselwirkungen mit adsorbierten Gastmolekülen mittels 13C- und 1H-MAS-NMR-Spektroskopie studiert wurden. Während DUT-8(Ni) Flexibilität zeigt, weist DUT-8(Cu) ein starres Gitter auf. Die Flexibilität der sogenannten Solid-Solutions hängt in ausgeprägter Weise vom Verhältnis der funktionalisierten bdc-Linker 2,5-bme-bdc und db-bdc ab. Dieses Verhältnis hat zudem einen großen Einfluss auf die Orientierung der adsorbierten CO2-Moleküle. Es wurde erstmals eine Methode vorgestellt, die den Festkörper-NMR-spektroskopischen Nachweis chiraler Seitengruppen in chiralen MOFs erlaubt, wie anhand des chiral modifizierten UMCM-1 (ChirUMCM-1) demonstriert wurde. Die Chiralität kann einen NMR-spektroskopisch messbaren Einfluss auf die intrinsische Dynamik des MOF-Gitters ausüben, wie am chiral modifizierten DUT-32 deutlich wurde, dessen chirale Seitengruppe selektiv 15N- und 13C-isotopenmarkiert wurde.

Synthesis of polycrystalline, vs. single-crystalline porous materials, such as metal-organic frameworks (MOFs), is usually beneficial due to shorter synthetic time and higher yields. However, the structural characterization of these materials by X-ray powder diffraction can be complicated. Even more difficult, is to track structural changes of MOFs by in situ experiments. Hence, we designed several successful techniques for the structural investigation of porous MOFs. These methods utilize the Structure Envelope (SE) density maps. SEs are surfaces which describing the pore system with the framework. It was shown that these maps can be easily generated from the structure factors of a few (1 to 10) of the most intense low index reflections. Application of SE in Charge Flipping calculations shortens and simplifies structure determination of MOF materials. This method provides excellent MOF models which can be used as a good starting point for their refinement. However, the most interesting results have been found by using Difference Envelope Density (DED) analysis. DED plots are made by taking the difference between observed and calculated SE densities. This allows us to study guest related issues of MOFs such as, location of guest molecules in the pores, tracking activation of MOFs and gas loading, etc. We also have shown that, DED created from routine powder diffraction patterns might provide very important information about MOF structure itself. In fact DED can be used for study of interpenetration, substituents locations and effects conformational changes in the MOF ligands. Generation and analysis of SEs and DEDs are easy and straightforward. It provides the information needed to explain major deviations in structure-property relationship in MOFs. In our opinion, this method might become one of the important and routine techniques for MOFs structural analysis.

Submitted by JADER BARBOSA DA SILVA FLOR null (jader@iq.unesp.br) on 2017-05-22T17:08:38Z No. of bitstreams: 1 TESE VERSÃO FINAL para a impressão.pdf: 8986552 bytes, checksum: 9b079a86ffb72f7d5def9d9e6c6ba45e (MD5) / Approved for entry into archive by Luiz Galeffi (luizgaleffi@gmail.com) on 2017-05-23T17:35:16Z (GMT) No. of bitstreams: 1 flor_jbs_dr_araiq.pdf: 8986552 bytes, checksum: 9b079a86ffb72f7d5def9d9e6c6ba45e (MD5) / Made available in DSpace on 2017-05-23T17:35:16Z (GMT). No. of bitstreams: 1 flor_jbs_dr_araiq.pdf: 8986552 bytes, checksum: 9b079a86ffb72f7d5def9d9e6c6ba45e (MD5) Previous issue date: 2017-05-03 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Neste projeto foram sintetizados e caracterizados materiais porosos conhecidos como Metal-Organic Frameworks (MOFs) que abrangem uma área da química que tem experimentado um crescimento muito grande nas duas últimas décadas. MOFs são compostos cristalinos contendo espaços potencialmente vazios (poros) construídos a partir de íons ou clusters metálicos interconectados por espaçadores orgânicos. Além da diversidade estrutural e topológica, estes materiais têm enorme potencial para muitas aplicações. Dentro desse contexto, o objetivo central do trabalho foi a preparação de MOFs de cobre(II) e zinco(II) e investigação da potencialidade de aplicação em catálise heterogênea. Dentre outros materiais, a MOF MOF-INZ foi preparada pela primeira vez a partir da funcionalização da HKUST-1 via processo PSM (Pos-Synthetic Modification) pela coordenação da isoniazida nos centros coordenativamente insaturados (CUSs) do íon cobre(II) do material precursor ativado. A utilização desse material como catalisador em reações de cicloadição de CO2 frente ao epóxido de propileno resultou em 95% de conversão do reagente em carbonato de propileno (após 72 horas, em presença de TBAI). A última etapa do trabalho consistiu na preparação das MOFs ZIF-8 e HKUST-1 em escala nanométrica, usando moduladores de concentração, e no desenvolvimento de uma técnica muito elegante para a formação de filmes finos sobre nanotubos de dióxido de titânio (com diâmetros da ordem de 50-100 nm). Os materiais híbridos preparados foram então submetidos a reações foto- e fotoeletrocatalíticas de redução de CO2. As MOFs adsorvidas nos eletrodos nanoestruturados mostraram atividades significativamente mais altas em comparação com o eletrodo não modificado. Sob irradiação de luz e na presença de ácido ascórbico, o compósito Ti/TiO2-ZIF-8 gerou cerca de 30 mmol/L de etanol e 2 mmol/L de metanol em fase gasosa, enquanto que reações fotoeletrocatalíticas de redução de CO2 produziram 104 mmol/L e 17 mmol/L desses mesmos produtos, respectivamente. Do que seja do nosso conhecimento, essa é a primeira vez que a redução fotoeletrocatalítica desse importante gás causador do efeito estufa é realizada sobre materiais baseado em MOFs e abre uma frente de pesquisa bastante promissora no que tange a introdução dessa importante classe de materiais porosos no design de fotoeletrocatalisadores para reações gasosas. / In this project, porous materials known as Metal-Organic Frameworks (MOFs) were synthesized and characterized, which cover a chemistry area that has experienced a very large growth in the last two decades. MOFs are crystalline compounds containing potentially empty spaces (pores) constructed from ions or metal clusters interconnected by organic spacers. In addition to structural and topological diversity, these materials have enormous potential for many applications. In this context, the main objective of the work was the preparation of copper (II) and zinc (II) MOFs and the investigation of the potentiality of application in heterogeneous catalysis. Among other materials, MOF MOF-INZ was prepared for the first time from the functionalization of HKUST-1 via PSM (Post-Synthetic Modification) process by the coordination of isoniazid to the coordinated unsaturated (CUSs) centers of the copper (II) activated precursor. The use of this material as a catalyst in CO2-cycloaddition reactions to propylene epoxide resulted in 95% conversion of the reactant into propylene carbonate (after 72 hours in the presence of TBAI). The last stage of the work consisted in the preparation of the ZIF-8 and HKUST-1 MOFs at nanoscale using concentration modulators and the development of a very elegant technique for the formation of thin films on titanium dioxide nanotubes (with diameters in the order of 50-100 nm). The prepared hybrid materials were then submitted to photo- and photoelectrocatalytic CO2 reduction reactions. The MOFs adsorbed on the nanostructured electrodes showed significantly higher activities compared to the unmodified electrode. Under light irradiation and in the presence of ascorbic acid, the Ti / TiO2-ZIF-8 composite generated about 30 mmol / L of ethanol and 2 mmol / L of methanol in the gas phase, while photoelectrocatalytic CO2 reduction reactions produced 104 Mmol / L and 17 mmol / L of these same products, respectively. To our knowledge, this is the first time that the photoelectrocatalytic reduction of this important greenhouse gas is carried out on materials based on MOFs and opens a very promising research front regarding the introduction of this important class of porous materials in the design of photoelectrocatalysts for gaseous reactions.