The genus Castor is represented in Eurasia by Castor fiber, North America by C. canadensis, and has been in North America since the late Miocene. This study aims to assess whether morphology of Miocene-Pliocene C. californicus and extant C. canadensis are distinctly different. Specimens of Castor were compared using geometric morphometrics on cranial material and linear measurements of postcranial material. Species occurrence data were compared with past and future climate data to assess Castor distribution in North America through time. Results show that C. canadensis is highly variable in both cranial and postcranial morphology and C. californicus falls largely within the range of variation seen within the extant species. Past distributions match fossil occurrences of Castor, suggesting confidence in projected models. Morphological and distribution similarities between the two species suggest that they can be treated as ecological analogs, though evaluation of whether they are conspecific will require more data.

The paleobiology of the Pleistocene North American giant short-faced bear, Arctodus simus, has eluded paleontologists for decades. Its more gracile form has led past researchers to myriad intepretations of the locomotion and feeding ecology of this species. While earlier studies have focused on craniodental morphology and simple postcranial indices, it is forelimb morphology that represents a direct compromise between locomotor and foraging behavior. The study here uses traditional and 3D landmark morphometrics to more completely compare the 3-dimensional shape of the major forelimb elements and their muscle attachment sites between A. simus, extant ursids, and other carnivorans. Results herein agree well with previous studies and provide additional evidence for reduced abductor/adductor and supinator/pronator musculature, more restricted parasagittal motion, increased stride length, and lighter and more packed distal elements. Forelimb skeletal morphology therefore supports the hypothesis that A. simmus represents a bear in the early stages of cursorial evolution.

The genus Aneides (Caudata: Plethodontidae) is an arboreal salamander with a prehensile tail and a distribution that spans North America. It is hypothesized that adaptations for arboreality will be visible in the osteology of the sacral vertebra either by qualitative analysis or linear and morphometric analysis in comparison with other plethodontid salamanders. This study demonstrates that while qualitative and quantitative analyses are successful at making genus-level distinctions between taxa, identification to lower taxonomic levels remains inconclusive. Linear morphometrics and dorsal Procrustes landmarks were the most successful metrics to identify known taxa. Two unidentified fossil salamander sacral vertebrae from Oregon Caves National Monument are examined with the same techniques and are tentatively identified as Hydromantes based on qualitative similarities to modern Hydromantes specimens, as the quantitative analyses were unable to confidently diagnose the unknown specimens.

This study focuses on the morphometric and systematic studies of fossil vitaceous seeds recently recovered from the Gray Fossil Site (7-4.5 Ma, latest Miocene-earliest Pliocene) northeastern Tennessee. Morphologically, all fossil seeds correspond to the extant subgenus Vitis (genus Vitis) of the Vitaceae based on the smooth dorsal surface with a centrally positioned chalaza connected with a conspicuous chalaza-apex groove and short linear ventral infolds that are slightly diverged apically. A multivariate analysis based on 11 measured characters from 76 complete seeds identified three types of seeds, each representing a distinct morphotaxon. Based on comparison with modern and fossil vitaceous specimens, three new species were recognized: Vitis grayana sp. nov., Vitis lanatoides sp. nov., and Vitis latisulcata sp.nov. The close resemblance between the first two fossil grapes (Vitis grayana and Vitis lanatoides) with extant eastern Asian Vitis provides further evidence that the eastern Asian floristic elements existing in the southeastern North American flora continued to as late as late Neogene.

Understanding why some species coexist and others do not remains one of the fundamental challenges of ecology. While several lines of evidence suggest that closely related species are unlikely to occupy the same habitat because of competitive exclusion, there are many cases where closely related species do co-occur. Research comparing sympatric and allopatric populations of co-occurring species provides a framework to understand the role of phenotypic diversification in species coexistence. In this study I focus on the livebearing fish Poeciliopsis baenschi and ask if differences in phenotypic traits among populations can be explained by the presence or absence of the congeneric species P. turneri. I focus on phenotypic divergence in life history traits and in body shape, two sets of integrated traits likely to respond to variation in competition. Additionally, I compare explore the effects of sympatry and allopatry on sexual dimorphism. I take advantage of a natural experiment in western Mexico where P. baenschi co-occur with P. turneri in some locations (sympatric populations) but also exist in isolation in other locations (allopatric populations). My results show that sympatric populations of P. baenschi differed significantly in life history traits and body shape when compared to their allopatric counterparts. Additionally, the amount of sexual dimorphism differed between sympatric and allopatric populations of P. baenschi, suggesting different constraints might exist in sympatry and allopatry for sexual dimorphism. Lastly, I explore my results in the context of trait evolution as it relates to species coexistence.

The movement of individuals is foundational to many ecological processes. For example, the movement of an organism from one place to another alters population density at both sites and has potential for affecting the genetic dynamics within the new population. Individual movement events may be in synchrony with overall trends in populations, e.g. spawning migrations, or may be atypical (asynchronous). This latter movement type can affect population and metapopulation dynamics, depending on its prevalence within a population. Nevertheless, given the complexity of interactions, the causative factors of movement are understood vaguely, much less for aquatic organisms. Drivers of movement are extrinsic (e.g. habitat quality, predation or habitat heterogeneity) and intrinsic (e.g. sex, size, or behavioral tendencies). Interactions among these drivers provide crucial insight into the patterns of movement observed within populations. Habitat is here shown to affect observed movement patterns of populations of southern leatherside chub (Lepidomeda aliciae). Streams with higher-quality habitat were inhabited by populations exhibiting lower overall movement compared to lower-quality streams. However, observations of individual long distance movement relative to the norm within the population suggest that movement may also be behaviorally based. In further tests, it is shown that, indeed, behavioral tendencies of individuals can be measured and are predictive of annual movement by individuals. Other drivers, habitat availability and quality, were also found to influence movement on a yearly basis. Movement patterns are also affected by the presence or absence of predators. A tropical livebearer (Brachyrhaphis rhabdophora) has a higher percentage of individuals classified as generally moving when predators are absent from the environment compared to predator sites. Predation environment also significantly affects individual body shape with predator sites possessing caudal peduncles with greater surface area, an adaptation likely promoting burst speed for greater escape abilities. Classification of individuals as generally moving or generally not moving was also significantly related to variation of body shape of these fish. However, biological significance is ambiguous given the absence of obvious morphology trends explained by this factor. It is critical to understand these drivers to better understand the dynamic interface between ecology and evolution.

Island isolation can cause changes in body size, cranial characteristics, and genetic variation in mammals. We use geometric morphometrics to test skull and mandible shape and size change across three species of endemic Cozumel Island rodents in order to test the “island rule” of larger size in isolated rodents. We also sequenced the D-Loop and cytochrome b region of the mitochondrial genome and tested for differences in genetic variation between island and mainland groups, as well as population structure and gene flow in order to assess the effect of island isolation on these three rodents. We found that the three species of rodents showed varying degrees of size and shape differences from island to mainland with some species varying considerably and others not at all. The genetic results were similar with some species exhibiting potential founder effects, while others showed little differentiation between the island and mainland. We conclude that evolution on islands is highly conditional on the history, community composition, and biology of the colonizing species.

Body-size variability results from a variety of extrinsic and intrinsic factors (environmental and biological influences) underpinned by phylogeny. In ostracodes it is assumed that body size is predominantly controlled by ecological conditions, but investigations have mostly focused on local or regional study areas. In this study, we investigate the geographical size variability (length, height, and width) of Holocene and Recent valves of the salinity-tolerant ostracode species Cyprideis torosa within a large geographical area (31◦–51◦ latitude, and 12◦–96◦ longitude). It is shown that distant local size clusters of Cyprideis torosa are framed within two large-scale geographical patterns. One pattern describes the separation of two different size classes (i.e., morphotypes) at around ∼42◦ N. The co-occurrence of both size morphotypes in the same habitats excludes an environmental control on the distribution of the morphotypes but rather could point to the existence of two differentiated lineages. Generally, correlations between valve size and environmental parameters (salinity, geographical positions) strongly depend on the taxonomic resolution. While latitude explains the overall size variability of C. torosa sensu lato (i.e., undifferentiated for morphotypes), salinity-size correlations are restricted to the morphotype scale. Another large-scale pattern represents a continuous increase in valve size of C. torosa with latitude according to the macroecological pattern referred as Bergmann trend. Existing explanations for Bergmann trends insufficiently clarify the size cline of C. torosa which might be because these models are restricted to intraspecific levels. The observed size-latitude relationship of C. torosa may, therefore, result from interspecific divergence (i.e., size ordered spatially may result from interspecific divergence sorting) while environmental influence is of minor importance. Our results imply that geographical body-size patterns of ostracodes are not straightforward and are probably not caused by universal mechanisms. Consideration of phylogenetic relationships of ostracodes is therefore necessary before attempting to identify the role of environmental controls on body size variability.

In ancestry estimation of South African individuals, non-metric morphological trait assessment has not proven useful and previous results in FORDISC 3.0 leave room for improvement. The accuracy rates of software programs FORDISC 3.1 and 3D-ID were compared for ancestry estimation based on cranial data of black and white South Africans using discriminant function analysis. Cranial landmarks were digitized using a Microscribe G2 for geometric morphometric analysis in 3D-ID, and traditional craniometric measurements for use in FORDISC were calculated using the data collection software 3Skull. Data was collected from a total of 385 individuals (186 black and 199 white crania) from the Pretoria Bone Collection. Overall accuracy rates of 75.6% using FORDISC 3.1 and 63.1% using 3D-ID were obtained for black and white South Africans. Incorrect estimates were more often due to misclassifications of sex rather than ancestry, reflecting the decreased amount of sexual dimorphism in South African populations when compared against American populations, discussed previously. Black South Africans were more often classified correctly in FORDISC 3.1, and white South Africans were more often classified correctly in 3D-ID. Low sample size in comparative databases and broad ancestral differences between South Africans and the proxy populations used (American, European, and African) likely explain the low accuracy rates. The use of FORDISC and 3D-ID in conjunction can help South African anthropologists in estimating ancestry and ensuring correct classifications.

京都大学 / 新制・課程博士 / 博士(理学) / 甲第24181号 / 理博第4872号 / 新制||理||1697(附属図書館) / 京都大学大学院理学研究科生物科学専攻 / (主査)教授 中務 真人, 教授 森 哲, 准教授 森本 直記 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DFAM