Indiana University-Purdue University Indianapolis (IUPUI) / Hematopoiesis proceeds through three developmental phases, each with a unique and indispensable function. The individual roles of these phases in the pathogenesis of blood disorders is unknown. We have adapted murine lineage trace models to identify the relative contributions of embryonic, fetal, and adult hematopoietic phases to the origin of Juvenile Myelomonocytic Leukemia. We hypothesized that the fetal phase would have the most pronounced contribution to the development of JMML, a pediatric myeloproliferative disorder whose disease-initiating somatic mutations occur in utero. Progenitors expressing PTPN11E76K from all three waves were growth hypersensitive to GM-CSF due to hyperactive RAS-ERK signaling. However, fulminant myeloproliferation was only seen in fetal and adult cohorts. We observed equal disease severity in FLT3Cre; PTPN11E76K; ROSA26mTmG and CSF1R-MCM; PTPN11E76K; ROSA26YFP cohorts, which had high and low mutant allele frequencies, respectively. This led to the revelation that all progenitors in the BM niche of mutant animals have equal growth hypersensitivity and RAS-ERK hyperactivation due to non-cell autonomous effects of PTPN11E76K. We further identified that FLT3Cre has hematopoietic-restricted expression, and thereby circumvented morbidity from PTPN11E76K expression in endothelial and stromal cells. This led us to hypothesize that FLT3Cre; KrasG12D; ROSA26mTmG would be the first faithful model of JMML to express this disease-initiating mutation. Indeed, FLT3Cre; KrasG12D mice were born at expected Mendelian ratio and showed normal weight gain to 2 weeks of age. Thereafter, they acquired defining features of JMML including monocytosis, anaemia, thrombocytopenia, and hepatosplenomegaly. All FLT3Cre; KrasG12D mice succumb to a JMML-like disease, which was propagated following transplantation. This is in contrast with CSF1R-MCM; KrasG12D; ROSA26YFP mice, in which low mutant allele frequencies in either fetal or adult HSCs uniformly resulted in T-ALL. Our models reveal previously underappreciated features of JMML including an expansion of dendritic cells and a pronounced defect in T-lymphocyte development. We are the first to demonstrate non-cell autonomous effects of hematopoietic-restricted PTPN11E76K expression. Most importantly, we have shown that both the spatial and the temporal origin of JMML-initiating mutations will affect disease manifestations. Each of our findings suggest novel strategies to treat this intractable disease.

<p>One of the most serious and economically important defects caused by clostridia in milk products is the late blowing of semi-hard cheeses.</p><p>Clostridia occur naturally in soil and can contaminate milk through crops contaminated by dung and soil followed by a less successful silage process, that give them opportunity to grow unaerobically. When anaerobic conditions occur, such as storage of semi-hard cheese, they ferment lactic acid to butyric acid and the gases CO₂ and H₂.</p><p>At the fusion of Arla and MD Foods, a series of changes were conducted on the MPN method for lactic acid fermentation for clostridia in milk. These changes resulted in an increased accuracy due to an increased number of test tubes and the change of media from MRCM to BBB, Bryant & Burkey Broth, that was thought to be more selective for <em>Cl. tyrobutyricum</em>, the organism mostly found in hard cheese. When the number of dairy farmers that were given quality reduction fines increased, the new method was suspected and a validation was conducted.</p><p>The validation included inoculation of different clostridia and bacillus strains into BBB substrate and enzymatic testing of positive samples with Rapid ID 32A. The inoculation result showed that almost all tested different clostridia strains could grow in BBB substrate.</p><p>Test on BBB positive tubes with Rapid ID 32A resulted in 95% clostridia of which 70% was <em>Cl. tyrobutyricum</em>. These results correlated well with earlier studies on MRCM substrate and the increase in quality reduction fines probably depended on the larger number of test tubes used in the new method rather than the change of substrate.</p> / <p>Clostridier eller främst <em>Cl. tyrobutyricum</em> är den art som i de flesta fall orsakar feljästa ellersönderjästa ostar, vilket är ett välkänt problem inom mejeriindustrin. Clostridiesporer finns naturligt i jord och hamnar i mjölkråvaran via gröda som kontaminerats med gödsel och jord och som tillsammans med en mindre lyckad ensileringsprocess gör att clostridierna växer till. När anaeroba förhållanden uppstår, såsom vid lagring av hårdost, förjäser clostridierna laktat och smörsyra varvid vätgas och koldioxid bildas.</p><p>I samband med fusionen av Arla/MD Foods, genomfördes metodförändringar för MPN-metoden för laktatjäsande clostridier i mjölk, som används inom mjölkbedömningen. Dessa förändringar innebar en skärpning i noggrannheten genom att man ökade antal rör, samt ett substratbyte från MRCM till BBB, Bryant & Burkey Broth, som ansågs mer gynnsamt för <em>Cl. tyrobutyricum</em>.</p><p>Då antalet mjölkproducenter som fick kvalitetsavdrag ökade, riktades misstankar mot den nya metoden och en validering genomfördes.</p><p>Resultatet av valideringen, som innebar ympning av renkulturer, utodling av positiva rör med efterföljande typning, visade att de flesta av de tillsatta stammarna av clostridier hade förmågan att ge ett positivt utslag vid tillsats av renkulturer. Utodling och typning av positiva rör visade att ca 70 % av de positiva utslagen innehöll <em>Cl. tyrobutyricum</em> och hela 95 % någon clostridieart. Dessa resultat korrelerar med tidigare studier på MRCM-substrat och ökningen av positiva utslag berodde troligtvis på det ökade antalet rör som den nya metoden innebar.</p>

One of the most serious and economically important defects caused by clostridia in milk products is the late blowing of semi-hard cheeses. Clostridia occur naturally in soil and can contaminate milk through crops contaminated by dung and soil followed by a less successful silage process, that give them opportunity to grow unaerobically. When anaerobic conditions occur, such as storage of semi-hard cheese, they ferment lactic acid to butyric acid and the gases CO2 and H2. At the fusion of Arla and MD Foods, a series of changes were conducted on the MPN method for lactic acid fermentation for clostridia in milk. These changes resulted in an increased accuracy due to an increased number of test tubes and the change of media from MRCM to BBB, Bryant &amp; Burkey Broth, that was thought to be more selective for Cl. tyrobutyricum, the organism mostly found in hard cheese. When the number of dairy farmers that were given quality reduction fines increased, the new method was suspected and a validation was conducted. The validation included inoculation of different clostridia and bacillus strains into BBB substrate and enzymatic testing of positive samples with Rapid ID 32A. The inoculation result showed that almost all tested different clostridia strains could grow in BBB substrate. Test on BBB positive tubes with Rapid ID 32A resulted in 95% clostridia of which 70% was Cl. tyrobutyricum. These results correlated well with earlier studies on MRCM substrate and the increase in quality reduction fines probably depended on the larger number of test tubes used in the new method rather than the change of substrate. / Clostridier eller främst Cl. tyrobutyricum är den art som i de flesta fall orsakar feljästa ellersönderjästa ostar, vilket är ett välkänt problem inom mejeriindustrin. Clostridiesporer finns naturligt i jord och hamnar i mjölkråvaran via gröda som kontaminerats med gödsel och jord och som tillsammans med en mindre lyckad ensileringsprocess gör att clostridierna växer till. När anaeroba förhållanden uppstår, såsom vid lagring av hårdost, förjäser clostridierna laktat och smörsyra varvid vätgas och koldioxid bildas. I samband med fusionen av Arla/MD Foods, genomfördes metodförändringar för MPN-metoden för laktatjäsande clostridier i mjölk, som används inom mjölkbedömningen. Dessa förändringar innebar en skärpning i noggrannheten genom att man ökade antal rör, samt ett substratbyte från MRCM till BBB, Bryant &amp; Burkey Broth, som ansågs mer gynnsamt för Cl. tyrobutyricum. Då antalet mjölkproducenter som fick kvalitetsavdrag ökade, riktades misstankar mot den nya metoden och en validering genomfördes. Resultatet av valideringen, som innebar ympning av renkulturer, utodling av positiva rör med efterföljande typning, visade att de flesta av de tillsatta stammarna av clostridier hade förmågan att ge ett positivt utslag vid tillsats av renkulturer. Utodling och typning av positiva rör visade att ca 70 % av de positiva utslagen innehöll Cl. tyrobutyricum och hela 95 % någon clostridieart. Dessa resultat korrelerar med tidigare studier på MRCM-substrat och ökningen av positiva utslag berodde troligtvis på det ökade antalet rör som den nya metoden innebar.

Le compostage est une technique de valorisation des déchets organiques en un produit stable et riche en matières humiques. Certains composts « verts » se sont révélés être de 2 à 3 fois plus efficaces sur la croissance des plantes que les composts classiques. Notre étude réalisée sur un compost fabriqué à partir de déchets végétaux a permis de suivre l’évolution de la densité et de la diversité de la microflore (bactéries, champignons) au cours du processus de maturation puis de tester l’impact de ce compost sur la diversité et l’activité de la microflore tellurique. Cette analyse a été effectuée par des techniques complémentaires : biochimiques (dosages enzymatiques), microbiologiques (cultures in vitro) et de biologie moléculaire (PCR-DGGE, Séquençage). Les résultats montrent qu’au cours de sa maturation, le compost étudié présente une baisse significative de son taux d’humidité et une augmentation sensible de son pH. Sa microflore subit une complète restructuration avec apparition de souches bactériennes susceptibles de dégrader des composés polluants comme les plastiques, les pesticides et les hydrocarbures. L’ajout de ce compost à deux types de sol présentant des propriétés physico-chimiques différentes, n’a pas montré de modifications importantes et durables de la diversité microbienne et fonctionnelle de celui-ci. Les causes de l’effet remarquable de ce compost sur la croissance végétale sont discutées. / Composting is a technique of transformation organic waste in a stable product rich in organic materials. Some "green" compost proved to be from 2 to 3 times more benefit on the growth of the plants than traditional composts. The main of this study is to follow the evolution of density and diversity of the microflora (bacteria, fungi) during the process of maturation of green compost manufactured from vegetable wastes, and to investigate the impact of this compost on the diversity and the activity of the telluric microflora. This analysis was carried out by complementary techniques: biochemical (enzymatic activity), microbiological (in vitro cultures) and molecular biology (PCR-DGGE, DNA sequencing). The results show that during its maturation, the studied compost presents a significant decrease of its water content and an appreciable increase in its pH. The microflora undergoes a complete reorganization with appearance of bacterial strain suitable for degrade polluting compounds like the plastics, the pesticides and hydrocarbons. The addition of this compost with two types of soil presenting of the different physicochemical properties, did not show significant and durable modifications of the microbial and functional diversity of this one. The causes of the remarkable effect of this compost on the vegetable growth are discussed.

Bifenilas policloradas (PCBs) são compostos de difícil degradação presentes na composição de ascarel, muito utilizado como fluidos dielétricos e isolantes. Neste contexto, a presente pesquisa teve como objetivo avaliar a diversidade de microrganismos em biofilmes de reatores anaeróbios na presença de PCB empregando Métodos de Microbiologia de Anaeróbios Estritos e de Biologia Molecular. Em reator anaeróbio horizontal de leito fixo (RAHLF), alimentado com etanol, formiato, Triton X-100 (0,1%) e ascarel (1 mL/L), operado com tempo de detenção hidráulica (TDH) de 24 horas, foi retirado a comunidade microbiana do biofilme da espuma de poliuretano. Os grupos microbianos encontrados por meio da clonagem e sequenciamento do gene RNAr 16S para o domínio Bacteria foram relacionados aos filos Thermogae, Proteobacteria (Brachymonas petroleovorans, 100% de similaridade e Methylobacillus, 98% de similaridade), Firmicutes (Clostridium, 97% de similaridade, Syntrophomonas, 100% de similaridade e Sporomusa com 100% de similaridade), Synegistetes (Synergistes, 98% de similaridade), Spirochaetes (Leptonema illini, 98% de similaridade), Aminanaerobia, Deferribacteres, Chlorobi, Chloroflexi e Armatimonadetes. Além disso, como nesse biofilme foram identificadas bactérias redutoras de ferro, procedeu-se a sua quantificação por meio da técnica de tubos múltiplos (NMP, Número Mais Provável) obtendo 5,26 x \'10 POT.12\' NMP/g STV de bactérias redutoras de ferro. Ensaio em batelada foi realizado separadamente sob duas condições: (1) metanogênica e (2) ferro redutora. Em ambas as condições foram adicionadas aroclor 1260 (PCB). Os reatores, sob condição metanogênica, foram alimentados com meio de cultivo Angelidaki e substratos orgânicos (formiato e etanol), além de aroclor 1260 (0,2 \'mü\'g/L). Para simular a condição redutora de ferro foi acrescido ao meio de cultura Angelidaki, EDTA férrico (1,86 g/L). A produção de metano, na presença de aroclor 1260 foi de 3,8 x \'10 POT.-4\' mmol \'CH IND.4\'/g STV. A presença de bactérias ferro redutoras foi confirmada indiretamente pela taxa média de redução férrica (90%) nos reatores em batelada, após 60 dias de operação. Por meio de PCR/DGGE, elaborou-se um dendograma das amostras deste ensaio em batelada (metanogênico e redutor de ferro) comparativamente com as do reator RAHLF (biofilme presente na parede do reator e no material suporte). Os reatores em batelada apresentaram similaridade entre si de 79% e 92% para os domínios Bacteria e Archaea, respectivamente. As amostras do reator RAHLF foram 80% (Bacteria) e 96% (Archaea) similares. A existência de bactérias degradadoras de PCB, bem como, bactérias redutoras de ferro no biofilme anaeróbio contribuiu com informações sobre o consórcio microbiano e sua diversidade. / Polychlorinated biphenyls (PCBs) are compounds of difficult degradation, a component of askarel, which were used widely as coolants and lubricants. Hence, this study evaluated the diversity of microorganisms in the presence of PCBs in anaerobic reactors. For such, methods as Strict Anaerobic Microbiology and Molecular Biology were employed. The microbial community of the biofilm, developed in a fixed horizontal bed anaerobic reactor (RAHLF), was studied using the technique of cloning and sequencing of RNAr 16S gene for the Bacteria domain. The reactor had immobilized cells in polyurethane foam with ethanol and formate as a carbon source, Triton X-100 (0.1%) and polychlorinated biphenyls (1 mL/L), and operated with 24 hours HRT. The microbial groups found in this biofilm were related to phyla Thermogae, Proteobacteria (Brachymonas petroleovorans, 100% similarity and Methylobacillus, 98% similarity), Firmicutes (Clostridium, 97% similarity Syntrophomonas, and 100% similarity with Sporomusa 100% similarity), Synegistetes (Synergistes, 98% similarity), Spirochaetes (Leptonema Illini, 98% similarity), Aminanaerobia, Deferribacteres, Chlorobi, Chloroflexi and Armatimonadetes. Furthermore, as bacteria that reduce iron were found, we proceeded the quantification by the multiple tube method (MPN) for this group, obtaining 5.26 x \'10 POT.12\' MPN/g STV of iron-reducing bacteria. The batch reactors evaluated the growth of microorganisms in two condictions: (1) methanogenic e (2) iron reduction, both had the presence of PCBs (Aroclor 1260). The reactor, under methanogenic condition, was fed with synthetic substrate Angelidaki, ethanol and formate, used as carbon source, and aroclor 1260 (0.2 \'mü\'g /L). To simulate the condition of iron reducing, the same synthetic substrate was supplemented with ferric EDTA (1.86 g/L). The production of methane in the presence of aroclor 1260, was 3.8 x \'10 POT.-4\' mmol \'CH IND.4\'/g STV. The presence of iron reducing bacteria, after 60 days, was confirmed indirectly by the average rate of iron ferric reduction (90%). Filogenetics analysis (PCR/DGGE) compared the samples of this batch reactor - methanogenic and reduction of iron ferric -, with the samples of RAHLF - the biofilm in the reactor wall and the support material. The two condictions in batch reactors showed similarity of 79% and 92% respectively for the Bacteria and Archaea domain. Therefore, both samples of RAHLF showed 80% (Bacteria) and 96% (Archaea) of similarity. In other words, more similarity were presented due configuration of the reactor as well as the type of PCB added. As a result, the existence of PCBs degrading bacteria and iron-reducing bacteria in anaerobic biofilm, provided informations about the microbial consortium and its diversity in the presence of PCB.

The breakdown of contaminants in soil resulting from microbial activity that is enhanced in the presence of the plant root zone, rhizosphere, has been termed rhizoremediation. To date, Australian native plants have not been assessed for their hydrocarbon rhizoremediation potential. The use of native plants offers an economically feasible and environmentally sustainable cleanup option for the rehabilitation and restoration of hydrocarbon contaminated sites in Australia. The aim of the study was to evaluate the potential of Australian native grass species for the rhizoremediation of aliphatic hydrocarbon contaminated soil from a mine site. Candidate Australian native grass species Poaceae were selected following the development of essential and desirable growth criteria. Nine perennial Australian grasses were evaluated for seedling emergence in sandy loam soil sourced from a mine site which was artificially contaminated with a 60:40 diesel/oil mix at concentrations of 30 000 mg/kg, 10 000 mg/kg, 5 000 mg/kg and 0 mg/kg control. Seedling emergence was not adversely affected by the presence of hydrocarbon contamination at the exposed concentrations for eight of the nine species studied p > 0.05. Three promising species were assessed for relative growth performance in diesel/oil contaminated 10 000 mg/kg, 5 000 mg/kg and uncontaminated control soils in greenhouse studies to assess their tolerance of aliphatic hydrocarbon contaminated soil. Cymbopogon ambiguus Lemon Scented grass is a summer growing perennial with widespread distribution throughout Australia including the region where the mine site is situated. Brachiaria decumbens Signal grass – naturalised - is adapted to humid tropical areas of Australia and is native to the site and sourced from seed banks. Microlaena stipoides Weeping grass var. Griffin is a cool season grass, widely distributed throughout Australia in moister regions. The three evaluated species survived for 120 days in the diesel/oil contaminated soil at the exposed concentrations without adverse growth affect p > 0.05. In some instances e.g. C. ambiguus growth stimulation occurred in the presence of contamination producing significantly more root biomass compared with the control p < 0.0001. Most hydrocarbon degradation is believed to occur through microbial processes, and so the plant-associated microbial community was examined in the three tolerant species. The assessment of the influence of grass on the abundance and activity of microorganisms in the rhizosphere revealed species-specific plant-induced changes in the soil microbial community. Selective enrichment of hydrocarbon degrading microorganisms was demonstrated in the rhizosphere soil of the Australian grasses tested, to varying degrees. C. ambiguus appeared to have the greatest influence on stimulation of hydrocarbon degrading microorganisms, followed by the cool season grass M. stipoides. B. decumbens showed consistently lower numbers of hydrocarbon degrading microorganisms in rhizosphere soil over time compared to the other two species p < 0.01. The influence of grasses on microbial community structure - defined as community DNA fingerprint - in diesel/oil contaminated soil suggested no new microbial population was favoured by the grasses - qualitative shift - rather there were relative quantitative changes in existing members of the microbial population. Soil lipase activity did not appear to be an optimal bioindicator of rhizoremediation and may encompass total soil microbial activity not exclusively the hydrocarbon degrading microorganisms of interest. The assessment of biodegradation of hydrocarbons in soil is essential to characterise the effectiveness of plant species in rhizoremediation. Residual diesel and oil concentrations as total petroleum hydrocarbons, TPH were measured using Gas Chromatography. The presence of single species successfully enhanced the removal of hydrocarbons from soil for all species. All showed significantly lower residual hydrocarbon concentrations than those in unplanted soil after 100 days p < 0.01. Significantly, it was not necessary to add N and P to achieve up to 90% reduction in hydrocarbon concentrations in the soil. The relative performance of each grass species varied. In soil planted with C. ambiguus hydrocarbon concentrations were reduced faster and to a greater extent than the other species studied, from 10 000 mg/kg to approximately 1 100 mg/kg TPH, 88% removal. Similar endpoint success was recorded for M. stipoides which facilitated 80% reduction in hydrocarbon concentrations. Interestingly, B. decumbens, the only naturalised species, did not perform as well as the other species, although still significantly better compared to unplanted controls, with hydrocarbon concentrations reduced to approximately 4 500 mg/kg, 49%. Hydrocarbon concentrations in unplanted control soil were reduced by 45% through natural biodegradation processes. Plant root and shoot tissue was periodically assessed for hydrocarbon accumulation and was shown to be negligible. A multispecies planted trial using C. ambiguus plus B. decumbens had no additional influence on total TPH removal. The final TPH removal efficiency in the multispecies trial was not significantly different p > 0.05 from that of the best single species performer of the two i.e. C. ambiguus. In a field application the planting of multiple species may still be desirable in order to preserve site biodiversity and assist rehabilitation of the area. A strong relationship between abundance of hydrocarbon degrading microorganisms in the rhizosphere and hydrocarbon biodegradation was demonstrated for all species p < 0.01. Those species which showed greatest stimulation of the microbial population resulted in enhanced TPH removal from soil. These species were the summer grass C. ambiguus and the winter species M. stipoides. This may allow for broader application both seasonally and geographically across Australia. B. decumbens showed successful rhizoremediation to a lesser degree, but may still be an option in multiple planting strategies. This investigation identified three Australian grass species from the nine evaluated that are candidates for further investigation for in situ rhizoremediation potential at field scale.

Made available in DSpace on 2014-06-11T19:31:35Z (GMT). No. of bitstreams: 0 Previous issue date: 2002-05Bitstream added on 2014-06-13T21:02:53Z : No. of bitstreams: 1 rocha_mm_dr_botfca.pdf: 1150326 bytes, checksum: 893acd7e01d7f269b3eaa875876c771e (MD5) / Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) / O manejo agrícola altera, em muito, as características físicas, químicas e biológicas dos solos. A cultura e as condições climáticas, assim como o tipo de solo propriamente dito, afetam a decomposição da matéria orgânica do solo e, consequentemente, a biogeociclagem dos nutrientes. A matéria orgânica é uma característica importante em relação à fertilidade do solo, de modo que o impacto do uso do solo precisa ser avaliado principalmente em agroecossistemas. O conhecimento dos efeitos do uso da terra e das práticas agrícolas sobre a comunidade microbiana é de fundamental importância, em vista das importantes funções que os microorganismos desempenham no solo e que irão se refletir na produtividade agrícola. Neste sentido, uma avaliação da biomassa microbiana e de microorganismos do solo pode evidenciar diversas alterações no ecossistema do solo que estão associadas ao teor de argila e/ou sistemas de plantio. No presente estudo, caracterizou-se a camada superficial do perfil de solos sob plantio direto e plantio convencional em quatro fazendas no Brasil em relação a alguns de seus componentes microbiológicos. Para tanto, analisou-se, mensalmente, a respiração do solo, a biomassa microbiana e grupos de microorganismos. A avaliação da biomassa microbiana foi feita através da técnica da fumigação-incubação (FI), utilizando-se a Equação: [(C-CO2 liberado pelo solo fumigado, no período de 0-10 dias de incubação) - (C-CO2 liberado pelo solo não-fumigado, ao longo de 10-20 dias de incubação)]/0,45. Os cálculos indicaram um conteúdo de carbono da biomassa microbiana significativamente maior nos solos sob sistema de plantio direto em relação àqueles sob plantio convencional, na camada amostrada (0-10 cm de profundidade). Quantidades significativamente maiores... / The crop management changes greatly the physical, chemical and biological soil properties. Furthermore, the crop and soil types, and the climatic conditions would affect on soil organic matter decomposition and on nutrients biogeociclying. Soil organic matter is a important characteristic in relationship soil fertility. The knowledge about effects on soil using and agriculture practices on soil microbial communities is very important, due to the function that microorganisms have in soil and it was going to in soil fertility. In this sense, evaluation of the soil microbial biomass and micro-organisms greatly aids predictions several changes in the soil ecosystems are associated with reduced tillage as compared with conventional tillage. Surface soils from long-term no-till and conventional tillage plots at four Brazil farms were characterised for microbial components. Soil respiration, microbial biomass carbon and counts of microorganisms were measured at intervals monthly. The evaluation of microbial biomass carbon was done by fumigation-incubation technique (FI). For calculating the soil microbial biomass carbon, the equation used was: Equation = [(CO2-C evolved by fumigated soil, 0-10 days) - (CO2-C evolved by unfumigated soil, 10-20 days)]/0,45. Significantly greater amounts of CO2-C were released from no-till than from conventional tilled soils. qCO2 values were not significantly different between tillage systems. This observation confirms that the tillage affected biological activity in those soils, further that qCO2 values didn't have significantily different which two tillage systems, in studied soils. Number both fungi and bacteria were assayed by Most Probable Number (MPN) by the agar drop counting technique and the microorganisms groups were calculated using by traditional Most Probable Number (MPN) method...(Complete abstract, click electronic access below)

Bifenilas policloradas (PCBs) são compostos de difícil degradação presentes na composição de ascarel, muito utilizado como fluidos dielétricos e isolantes. Neste contexto, a presente pesquisa teve como objetivo avaliar a diversidade de microrganismos em biofilmes de reatores anaeróbios na presença de PCB empregando Métodos de Microbiologia de Anaeróbios Estritos e de Biologia Molecular. Em reator anaeróbio horizontal de leito fixo (RAHLF), alimentado com etanol, formiato, Triton X-100 (0,1%) e ascarel (1 mL/L), operado com tempo de detenção hidráulica (TDH) de 24 horas, foi retirado a comunidade microbiana do biofilme da espuma de poliuretano. Os grupos microbianos encontrados por meio da clonagem e sequenciamento do gene RNAr 16S para o domínio Bacteria foram relacionados aos filos Thermogae, Proteobacteria (Brachymonas petroleovorans, 100% de similaridade e Methylobacillus, 98% de similaridade), Firmicutes (Clostridium, 97% de similaridade, Syntrophomonas, 100% de similaridade e Sporomusa com 100% de similaridade), Synegistetes (Synergistes, 98% de similaridade), Spirochaetes (Leptonema illini, 98% de similaridade), Aminanaerobia, Deferribacteres, Chlorobi, Chloroflexi e Armatimonadetes. Além disso, como nesse biofilme foram identificadas bactérias redutoras de ferro, procedeu-se a sua quantificação por meio da técnica de tubos múltiplos (NMP, Número Mais Provável) obtendo 5,26 x \'10 POT.12\' NMP/g STV de bactérias redutoras de ferro. Ensaio em batelada foi realizado separadamente sob duas condições: (1) metanogênica e (2) ferro redutora. Em ambas as condições foram adicionadas aroclor 1260 (PCB). Os reatores, sob condição metanogênica, foram alimentados com meio de cultivo Angelidaki e substratos orgânicos (formiato e etanol), além de aroclor 1260 (0,2 \'mü\'g/L). Para simular a condição redutora de ferro foi acrescido ao meio de cultura Angelidaki, EDTA férrico (1,86 g/L). A produção de metano, na presença de aroclor 1260 foi de 3,8 x \'10 POT.-4\' mmol \'CH IND.4\'/g STV. A presença de bactérias ferro redutoras foi confirmada indiretamente pela taxa média de redução férrica (90%) nos reatores em batelada, após 60 dias de operação. Por meio de PCR/DGGE, elaborou-se um dendograma das amostras deste ensaio em batelada (metanogênico e redutor de ferro) comparativamente com as do reator RAHLF (biofilme presente na parede do reator e no material suporte). Os reatores em batelada apresentaram similaridade entre si de 79% e 92% para os domínios Bacteria e Archaea, respectivamente. As amostras do reator RAHLF foram 80% (Bacteria) e 96% (Archaea) similares. A existência de bactérias degradadoras de PCB, bem como, bactérias redutoras de ferro no biofilme anaeróbio contribuiu com informações sobre o consórcio microbiano e sua diversidade. / Polychlorinated biphenyls (PCBs) are compounds of difficult degradation, a component of askarel, which were used widely as coolants and lubricants. Hence, this study evaluated the diversity of microorganisms in the presence of PCBs in anaerobic reactors. For such, methods as Strict Anaerobic Microbiology and Molecular Biology were employed. The microbial community of the biofilm, developed in a fixed horizontal bed anaerobic reactor (RAHLF), was studied using the technique of cloning and sequencing of RNAr 16S gene for the Bacteria domain. The reactor had immobilized cells in polyurethane foam with ethanol and formate as a carbon source, Triton X-100 (0.1%) and polychlorinated biphenyls (1 mL/L), and operated with 24 hours HRT. The microbial groups found in this biofilm were related to phyla Thermogae, Proteobacteria (Brachymonas petroleovorans, 100% similarity and Methylobacillus, 98% similarity), Firmicutes (Clostridium, 97% similarity Syntrophomonas, and 100% similarity with Sporomusa 100% similarity), Synegistetes (Synergistes, 98% similarity), Spirochaetes (Leptonema Illini, 98% similarity), Aminanaerobia, Deferribacteres, Chlorobi, Chloroflexi and Armatimonadetes. Furthermore, as bacteria that reduce iron were found, we proceeded the quantification by the multiple tube method (MPN) for this group, obtaining 5.26 x \'10 POT.12\' MPN/g STV of iron-reducing bacteria. The batch reactors evaluated the growth of microorganisms in two condictions: (1) methanogenic e (2) iron reduction, both had the presence of PCBs (Aroclor 1260). The reactor, under methanogenic condition, was fed with synthetic substrate Angelidaki, ethanol and formate, used as carbon source, and aroclor 1260 (0.2 \'mü\'g /L). To simulate the condition of iron reducing, the same synthetic substrate was supplemented with ferric EDTA (1.86 g/L). The production of methane in the presence of aroclor 1260, was 3.8 x \'10 POT.-4\' mmol \'CH IND.4\'/g STV. The presence of iron reducing bacteria, after 60 days, was confirmed indirectly by the average rate of iron ferric reduction (90%). Filogenetics analysis (PCR/DGGE) compared the samples of this batch reactor - methanogenic and reduction of iron ferric -, with the samples of RAHLF - the biofilm in the reactor wall and the support material. The two condictions in batch reactors showed similarity of 79% and 92% respectively for the Bacteria and Archaea domain. Therefore, both samples of RAHLF showed 80% (Bacteria) and 96% (Archaea) of similarity. In other words, more similarity were presented due configuration of the reactor as well as the type of PCB added. As a result, the existence of PCBs degrading bacteria and iron-reducing bacteria in anaerobic biofilm, provided informations about the microbial consortium and its diversity in the presence of PCB.

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