The Great Australian Bight (GAB) was for many years thought to be an area of limited biological productivity due to a perceived lack of nutrient enrichment processes. These conclusions, however, were based on data from few studies in the western GAB which were assumed to reflect conditions throughout the entire GAB. More recent studies have reported the occurrence of coastal upwelling in the eastern GAB (EGAB) during summer/autumn (November-April), characterized by low sea surface temperatures and elevated concentrations of chlorophyll α, which suggests that certain areas of the GAB may be highly productive during certain times of the year. The eastern Great Australian Bight (EGAB) forms part of the Southern and Indian Oceans and is an area of high ecological and economic importance. Although it supports the largest fishery in Australia (the South Australian Sardine fishery, annual catches since 2004 ~ 25,000 to 42,500 t), quantitative estimates of the primary productivity underlying this industry are open to debate. Estimates range from < 100 mg C m⁻² day⁻¹ to > 500 mg C m⁻² day⁻¹. Part of this variation may be due to the unique upwelling circulation of shelf waters in summer/autumn (November-April), which shares some similarities with highly productive eastern boundary current upwelling systems, but differs due to the influence of a northern boundary current, the Flinders current, and a wide continental shelf. Shelf waters encompass an area of ~115,000 km², and the diverse coastal topography forms part of one of the longest stretches of southward facing coastline in the world. In summer-autumn, winds are upwelling favourable, and the Flinders current running along the continental slope causes the upwelling of the deep permanent thermocline from around 600 m depth (dynamic uplift), allowing nutrient rich cold water to entrain onto the shelf. In winterspring, the EGAB is dominated by westerly downwelling-favourable winds, and upwelling via the Flinders current is suppressed. Thus, the area is highly dynamic, with significant spatial and temporal variations in meteorology and oceanography which may drive variations in nutrient enrichment and productivity. This study represents the first intensive investigation of the primary and secondary productivity of the EGAB, and was designed to evaluate the general hypothesis that spatial and temporal variations in meteorology and oceanography in the EGAB will drive spatial and temporal variations in phytoplankton size structure, and primary and secondary productivity. It examines variations in primary and secondary productivity in the EGAB during the upwelling and downwelling seasons of 2004, and the upwelling seasons of 2005 and 2006. Daily integral productivity calculated using the vertically generalised production model (VGPM) showed a high degree of spatial variation. Productivity was low (<800 mg C m⁻² day⁻¹) in offshore central and western regions of the EGAB. High productivities (1600-3900 mg C m⁻² day⁻¹) were restricted to hotspots in the east that were influenced by the upwelled water mass. There was a strong correlation between the depth of the euphotic zone and the depth of the mixed layer that suggested that ~50% of the euphotic zone lay below the mixed layer depth. As a result, high rates of primary productivity did not require upwelled water to reach the surface. A significant proportion of total productivity in the euphotic zone (57% in 2005 and 65% in 2006) occurred in the upwelled water mass below the surface mixed layer. This result has implications for daily integral productivities modelled with the VGPM, which uses surface measures of phytoplankton biomass to calculate productivity. Macro nutrient concentrations could not be used to explain the difference in the low and high productivities (silica >1 μmol L⁻¹, nitrate/nitrite >0.4 μmol L⁻¹, phosphate >0.1 μmol L⁻¹). Mixing patterns or micro-nutrient concentrations are possible explanations for spatial variations in primary productivity in the EGAB. On a global scale, daily rates of primary productivity of the EGAB lie between the highly productive eastern boundary current upwelling systems, and less productive coastal regions of western and south eastern Australia, and the oligotrophic ocean. However, daily productivity rates in the upwelling hotspots of the EGAB rival productivities in Benguela and Humbolt currents. Temporal variation in mixing and primary productivity was examined in upwelling influenced nearshore waters off south western Eyre Peninsula (SWEP) in the EGAB. Mixing/stratification in the region was highly temporally variable due to the unique upwelling circulation in summer/autumn, and downwelling through winter/spring. Highest productivity was associated with pwelled/stratified water (up to 2958 mg C m⁻² d⁻¹), with low productivity during periods of downwelling and mixing (~300-550 mg C m⁻² d⁻¹), yet no major variations in macro-nutrient concentrations were detected between upwelling and downwelling events (silica >1 μmol L⁻¹, nitrate/nitrite >0.4 μmol L⁻¹, phosphate >0.1 μmol L⁻¹). We hypothesise that upwelling enriches the region with micro-nutrients. High productivity off SWEP appears to be driven by a shallowing of mixed layer depth due to the injection of upwelled waters above Z[subscript]cr. Low productivity follows the suppression of enrichment during downwelling/mixing events, and is exacerbated in winter/spring by low irradiances and short daylengths. Phytoplankton abundance and community composition was also examined in the shelf waters of the EGAB. Phytoplankton abundances were generally higher in near shore waters compared with offshore waters, and during the summer/autumn upwelling season compared with the winter/spring downwelling season. Three distinctly different phytoplankton communities were present in the region during the upwelling and downwelling seasons of 2004, and the upwelling season of 2005, with distinctions manifest in variations in the abundance of dominant types of phytoplankton, and differences in average cell sizes. In summer/autumn, waters influenced by upwelling were characterised by high phytoplankton abundances (particularly diatoms) and larger average cell sizes, while the warmer high-nutrientlow- chlorophyll (HNLC) waters in the region had lower phytoplankton abundances and smaller average cell sizes. The winter/spring community was made up of low abundances of relatively large cells. Diatoms always dominated, but evidence of Si limitation of further diatom growth suggests there may be an upper limit to diatom productivity in the region. The maximum observed diatom concentration of ~164,000 cells L⁻¹ occurred in February/March 2004, in an area influenced by the upwelled water mass. Variations in phytoplankton biodiversity in the shelf waters of southern Australia appear to be related to variations in the influence of upwelling in the region. Meso-zooplankton abundance and community composition was examined in the coastal upwelling system of the EGAB. Spatial and temporal variations were influenced by variations in primary productivity and phytoplankton abundance and community composition, which were driven by variations in the influence of upwelling in the region. Peak meso-zooplankton abundances and biomass occurred in the highly productive upwelling influenced nearshore waters of the EGAB. However, abundances were highly variable between regions and years, reflecting the high spatial and temporal variations in primary productivity and phytoplankton abundance that characterise the shelf waters of the region. Spatial and temporal variations in community composition were driven by changes in the abundance of classes of meso zooplankton common to all regions in both years of this study. Meroplanktonic larvae and opportunistic colonizers dominated the community through the upwelling season, in response to increased primary productivity and phytoplankton blooms. Differences in community composition between upwelling influenced waters and the more HNLC regions appear to be reflected in the relative abundances of cladocera and appendicularia, with cladocera more abundant in productive upwelling influenced areas, and appendicularia thriving in the more HNLC regions of the EGAB. Highest potential grazing rates in the EGAB occurred in nearshore regions with highest mesozooplankton biomass, most likely in response to the high phytoplankton biomass that occurs in the same regions. Peak meso-zooplankton grazing rates in the EGAB were ~80% less than those measured in south west Spencer Gulf in March 2007, and ~35% greater than grazing rates in the Huon Estuary in February 2005. Productivity in the EGAB shows significant spatial and temporal variation, with changes reflecting regional and seasonal variation in meteorology and oceanography, and the water masses present in the region. The overall productivity of a summer/autumn upwelling season was highly dependent on within-season variations in wind strength and direction, which dictate the number, intensity, and duration of upwelling events. Rates of primary productivity measured in the EGAB at a given time depended on the meteorological and oceanographic conditions in the region in the lead up to, and during, the sampling event. We hypothesise that during upwelling events, high productivity in the EGAB is driven by the enrichment of waters above Z[subscript]cr, but below the surface mixed layer, with micro-nutrients. Low productivity within summer/autumn upwelling seasons follows the suppression of this enrichment during downwelling/mixing events, and the overall productivity of the upwelling season will depend on the number, duration and intensity of these downwelling/mixing events. Low productivity during winter/spring is driven by the absence of upwelling, low irradiances and short daylengths. / Thesis (Ph.D.) - University of Adelaide, School of Earth and Environmental Sciences, 2009

The Great Australian Bight (GAB) was for many years thought to be an area of limited biological productivity due to a perceived lack of nutrient enrichment processes. These conclusions, however, were based on data from few studies in the western GAB which were assumed to reflect conditions throughout the entire GAB. More recent studies have reported the occurrence of coastal upwelling in the eastern GAB (EGAB) during summer/autumn (November-April), characterized by low sea surface temperatures and elevated concentrations of chlorophyll α, which suggests that certain areas of the GAB may be highly productive during certain times of the year. The eastern Great Australian Bight (EGAB) forms part of the Southern and Indian Oceans and is an area of high ecological and economic importance. Although it supports the largest fishery in Australia (the South Australian Sardine fishery, annual catches since 2004 ~ 25,000 to 42,500 t), quantitative estimates of the primary productivity underlying this industry are open to debate. Estimates range from < 100 mg C m⁻² day⁻¹ to > 500 mg C m⁻² day⁻¹. Part of this variation may be due to the unique upwelling circulation of shelf waters in summer/autumn (November-April), which shares some similarities with highly productive eastern boundary current upwelling systems, but differs due to the influence of a northern boundary current, the Flinders current, and a wide continental shelf. Shelf waters encompass an area of ~115,000 km², and the diverse coastal topography forms part of one of the longest stretches of southward facing coastline in the world. In summer-autumn, winds are upwelling favourable, and the Flinders current running along the continental slope causes the upwelling of the deep permanent thermocline from around 600 m depth (dynamic uplift), allowing nutrient rich cold water to entrain onto the shelf. In winterspring, the EGAB is dominated by westerly downwelling-favourable winds, and upwelling via the Flinders current is suppressed. Thus, the area is highly dynamic, with significant spatial and temporal variations in meteorology and oceanography which may drive variations in nutrient enrichment and productivity. This study represents the first intensive investigation of the primary and secondary productivity of the EGAB, and was designed to evaluate the general hypothesis that spatial and temporal variations in meteorology and oceanography in the EGAB will drive spatial and temporal variations in phytoplankton size structure, and primary and secondary productivity. It examines variations in primary and secondary productivity in the EGAB during the upwelling and downwelling seasons of 2004, and the upwelling seasons of 2005 and 2006. Daily integral productivity calculated using the vertically generalised production model (VGPM) showed a high degree of spatial variation. Productivity was low (<800 mg C m⁻² day⁻¹) in offshore central and western regions of the EGAB. High productivities (1600-3900 mg C m⁻² day⁻¹) were restricted to hotspots in the east that were influenced by the upwelled water mass. There was a strong correlation between the depth of the euphotic zone and the depth of the mixed layer that suggested that ~50% of the euphotic zone lay below the mixed layer depth. As a result, high rates of primary productivity did not require upwelled water to reach the surface. A significant proportion of total productivity in the euphotic zone (57% in 2005 and 65% in 2006) occurred in the upwelled water mass below the surface mixed layer. This result has implications for daily integral productivities modelled with the VGPM, which uses surface measures of phytoplankton biomass to calculate productivity. Macro nutrient concentrations could not be used to explain the difference in the low and high productivities (silica >1 μmol L⁻¹, nitrate/nitrite >0.4 μmol L⁻¹, phosphate >0.1 μmol L⁻¹). Mixing patterns or micro-nutrient concentrations are possible explanations for spatial variations in primary productivity in the EGAB. On a global scale, daily rates of primary productivity of the EGAB lie between the highly productive eastern boundary current upwelling systems, and less productive coastal regions of western and south eastern Australia, and the oligotrophic ocean. However, daily productivity rates in the upwelling hotspots of the EGAB rival productivities in Benguela and Humbolt currents. Temporal variation in mixing and primary productivity was examined in upwelling influenced nearshore waters off south western Eyre Peninsula (SWEP) in the EGAB. Mixing/stratification in the region was highly temporally variable due to the unique upwelling circulation in summer/autumn, and downwelling through winter/spring. Highest productivity was associated with pwelled/stratified water (up to 2958 mg C m⁻² d⁻¹), with low productivity during periods of downwelling and mixing (~300-550 mg C m⁻² d⁻¹), yet no major variations in macro-nutrient concentrations were detected between upwelling and downwelling events (silica >1 μmol L⁻¹, nitrate/nitrite >0.4 μmol L⁻¹, phosphate >0.1 μmol L⁻¹). We hypothesise that upwelling enriches the region with micro-nutrients. High productivity off SWEP appears to be driven by a shallowing of mixed layer depth due to the injection of upwelled waters above Z[subscript]cr. Low productivity follows the suppression of enrichment during downwelling/mixing events, and is exacerbated in winter/spring by low irradiances and short daylengths. Phytoplankton abundance and community composition was also examined in the shelf waters of the EGAB. Phytoplankton abundances were generally higher in near shore waters compared with offshore waters, and during the summer/autumn upwelling season compared with the winter/spring downwelling season. Three distinctly different phytoplankton communities were present in the region during the upwelling and downwelling seasons of 2004, and the upwelling season of 2005, with distinctions manifest in variations in the abundance of dominant types of phytoplankton, and differences in average cell sizes. In summer/autumn, waters influenced by upwelling were characterised by high phytoplankton abundances (particularly diatoms) and larger average cell sizes, while the warmer high-nutrientlow- chlorophyll (HNLC) waters in the region had lower phytoplankton abundances and smaller average cell sizes. The winter/spring community was made up of low abundances of relatively large cells. Diatoms always dominated, but evidence of Si limitation of further diatom growth suggests there may be an upper limit to diatom productivity in the region. The maximum observed diatom concentration of ~164,000 cells L⁻¹ occurred in February/March 2004, in an area influenced by the upwelled water mass. Variations in phytoplankton biodiversity in the shelf waters of southern Australia appear to be related to variations in the influence of upwelling in the region. Meso-zooplankton abundance and community composition was examined in the coastal upwelling system of the EGAB. Spatial and temporal variations were influenced by variations in primary productivity and phytoplankton abundance and community composition, which were driven by variations in the influence of upwelling in the region. Peak meso-zooplankton abundances and biomass occurred in the highly productive upwelling influenced nearshore waters of the EGAB. However, abundances were highly variable between regions and years, reflecting the high spatial and temporal variations in primary productivity and phytoplankton abundance that characterise the shelf waters of the region. Spatial and temporal variations in community composition were driven by changes in the abundance of classes of meso zooplankton common to all regions in both years of this study. Meroplanktonic larvae and opportunistic colonizers dominated the community through the upwelling season, in response to increased primary productivity and phytoplankton blooms. Differences in community composition between upwelling influenced waters and the more HNLC regions appear to be reflected in the relative abundances of cladocera and appendicularia, with cladocera more abundant in productive upwelling influenced areas, and appendicularia thriving in the more HNLC regions of the EGAB. Highest potential grazing rates in the EGAB occurred in nearshore regions with highest mesozooplankton biomass, most likely in response to the high phytoplankton biomass that occurs in the same regions. Peak meso-zooplankton grazing rates in the EGAB were ~80% less than those measured in south west Spencer Gulf in March 2007, and ~35% greater than grazing rates in the Huon Estuary in February 2005. Productivity in the EGAB shows significant spatial and temporal variation, with changes reflecting regional and seasonal variation in meteorology and oceanography, and the water masses present in the region. The overall productivity of a summer/autumn upwelling season was highly dependent on within-season variations in wind strength and direction, which dictate the number, intensity, and duration of upwelling events. Rates of primary productivity measured in the EGAB at a given time depended on the meteorological and oceanographic conditions in the region in the lead up to, and during, the sampling event. We hypothesise that during upwelling events, high productivity in the EGAB is driven by the enrichment of waters above Z[subscript]cr, but below the surface mixed layer, with micro-nutrients. Low productivity within summer/autumn upwelling seasons follows the suppression of this enrichment during downwelling/mixing events, and the overall productivity of the upwelling season will depend on the number, duration and intensity of these downwelling/mixing events. Low productivity during winter/spring is driven by the absence of upwelling, low irradiances and short daylengths. / Thesis (Ph.D.) - University of Adelaide, School of Earth and Environmental Sciences, 2009

The Great Australian Bight (GAB) was for many years thought to be an area of limited biological productivity due to a perceived lack of nutrient enrichment processes. These conclusions, however, were based on data from few studies in the western GAB which were assumed to reflect conditions throughout the entire GAB. More recent studies have reported the occurrence of coastal upwelling in the eastern GAB (EGAB) during summer/autumn (November-April), characterized by low sea surface temperatures and elevated concentrations of chlorophyll α, which suggests that certain areas of the GAB may be highly productive during certain times of the year. The eastern Great Australian Bight (EGAB) forms part of the Southern and Indian Oceans and is an area of high ecological and economic importance. Although it supports the largest fishery in Australia (the South Australian Sardine fishery, annual catches since 2004 ~ 25,000 to 42,500 t), quantitative estimates of the primary productivity underlying this industry are open to debate. Estimates range from < 100 mg C m⁻² day⁻¹ to > 500 mg C m⁻² day⁻¹. Part of this variation may be due to the unique upwelling circulation of shelf waters in summer/autumn (November-April), which shares some similarities with highly productive eastern boundary current upwelling systems, but differs due to the influence of a northern boundary current, the Flinders current, and a wide continental shelf. Shelf waters encompass an area of ~115,000 km², and the diverse coastal topography forms part of one of the longest stretches of southward facing coastline in the world. In summer-autumn, winds are upwelling favourable, and the Flinders current running along the continental slope causes the upwelling of the deep permanent thermocline from around 600 m depth (dynamic uplift), allowing nutrient rich cold water to entrain onto the shelf. In winterspring, the EGAB is dominated by westerly downwelling-favourable winds, and upwelling via the Flinders current is suppressed. Thus, the area is highly dynamic, with significant spatial and temporal variations in meteorology and oceanography which may drive variations in nutrient enrichment and productivity. This study represents the first intensive investigation of the primary and secondary productivity of the EGAB, and was designed to evaluate the general hypothesis that spatial and temporal variations in meteorology and oceanography in the EGAB will drive spatial and temporal variations in phytoplankton size structure, and primary and secondary productivity. It examines variations in primary and secondary productivity in the EGAB during the upwelling and downwelling seasons of 2004, and the upwelling seasons of 2005 and 2006. Daily integral productivity calculated using the vertically generalised production model (VGPM) showed a high degree of spatial variation. Productivity was low (<800 mg C m⁻² day⁻¹) in offshore central and western regions of the EGAB. High productivities (1600-3900 mg C m⁻² day⁻¹) were restricted to hotspots in the east that were influenced by the upwelled water mass. There was a strong correlation between the depth of the euphotic zone and the depth of the mixed layer that suggested that ~50% of the euphotic zone lay below the mixed layer depth. As a result, high rates of primary productivity did not require upwelled water to reach the surface. A significant proportion of total productivity in the euphotic zone (57% in 2005 and 65% in 2006) occurred in the upwelled water mass below the surface mixed layer. This result has implications for daily integral productivities modelled with the VGPM, which uses surface measures of phytoplankton biomass to calculate productivity. Macro nutrient concentrations could not be used to explain the difference in the low and high productivities (silica >1 μmol L⁻¹, nitrate/nitrite >0.4 μmol L⁻¹, phosphate >0.1 μmol L⁻¹). Mixing patterns or micro-nutrient concentrations are possible explanations for spatial variations in primary productivity in the EGAB. On a global scale, daily rates of primary productivity of the EGAB lie between the highly productive eastern boundary current upwelling systems, and less productive coastal regions of western and south eastern Australia, and the oligotrophic ocean. However, daily productivity rates in the upwelling hotspots of the EGAB rival productivities in Benguela and Humbolt currents. Temporal variation in mixing and primary productivity was examined in upwelling influenced nearshore waters off south western Eyre Peninsula (SWEP) in the EGAB. Mixing/stratification in the region was highly temporally variable due to the unique upwelling circulation in summer/autumn, and downwelling through winter/spring. Highest productivity was associated with pwelled/stratified water (up to 2958 mg C m⁻² d⁻¹), with low productivity during periods of downwelling and mixing (~300-550 mg C m⁻² d⁻¹), yet no major variations in macro-nutrient concentrations were detected between upwelling and downwelling events (silica >1 μmol L⁻¹, nitrate/nitrite >0.4 μmol L⁻¹, phosphate >0.1 μmol L⁻¹). We hypothesise that upwelling enriches the region with micro-nutrients. High productivity off SWEP appears to be driven by a shallowing of mixed layer depth due to the injection of upwelled waters above Z[subscript]cr. Low productivity follows the suppression of enrichment during downwelling/mixing events, and is exacerbated in winter/spring by low irradiances and short daylengths. Phytoplankton abundance and community composition was also examined in the shelf waters of the EGAB. Phytoplankton abundances were generally higher in near shore waters compared with offshore waters, and during the summer/autumn upwelling season compared with the winter/spring downwelling season. Three distinctly different phytoplankton communities were present in the region during the upwelling and downwelling seasons of 2004, and the upwelling season of 2005, with distinctions manifest in variations in the abundance of dominant types of phytoplankton, and differences in average cell sizes. In summer/autumn, waters influenced by upwelling were characterised by high phytoplankton abundances (particularly diatoms) and larger average cell sizes, while the warmer high-nutrientlow- chlorophyll (HNLC) waters in the region had lower phytoplankton abundances and smaller average cell sizes. The winter/spring community was made up of low abundances of relatively large cells. Diatoms always dominated, but evidence of Si limitation of further diatom growth suggests there may be an upper limit to diatom productivity in the region. The maximum observed diatom concentration of ~164,000 cells L⁻¹ occurred in February/March 2004, in an area influenced by the upwelled water mass. Variations in phytoplankton biodiversity in the shelf waters of southern Australia appear to be related to variations in the influence of upwelling in the region. Meso-zooplankton abundance and community composition was examined in the coastal upwelling system of the EGAB. Spatial and temporal variations were influenced by variations in primary productivity and phytoplankton abundance and community composition, which were driven by variations in the influence of upwelling in the region. Peak meso-zooplankton abundances and biomass occurred in the highly productive upwelling influenced nearshore waters of the EGAB. However, abundances were highly variable between regions and years, reflecting the high spatial and temporal variations in primary productivity and phytoplankton abundance that characterise the shelf waters of the region. Spatial and temporal variations in community composition were driven by changes in the abundance of classes of meso zooplankton common to all regions in both years of this study. Meroplanktonic larvae and opportunistic colonizers dominated the community through the upwelling season, in response to increased primary productivity and phytoplankton blooms. Differences in community composition between upwelling influenced waters and the more HNLC regions appear to be reflected in the relative abundances of cladocera and appendicularia, with cladocera more abundant in productive upwelling influenced areas, and appendicularia thriving in the more HNLC regions of the EGAB. Highest potential grazing rates in the EGAB occurred in nearshore regions with highest mesozooplankton biomass, most likely in response to the high phytoplankton biomass that occurs in the same regions. Peak meso-zooplankton grazing rates in the EGAB were ~80% less than those measured in south west Spencer Gulf in March 2007, and ~35% greater than grazing rates in the Huon Estuary in February 2005. Productivity in the EGAB shows significant spatial and temporal variation, with changes reflecting regional and seasonal variation in meteorology and oceanography, and the water masses present in the region. The overall productivity of a summer/autumn upwelling season was highly dependent on within-season variations in wind strength and direction, which dictate the number, intensity, and duration of upwelling events. Rates of primary productivity measured in the EGAB at a given time depended on the meteorological and oceanographic conditions in the region in the lead up to, and during, the sampling event. We hypothesise that during upwelling events, high productivity in the EGAB is driven by the enrichment of waters above Z[subscript]cr, but below the surface mixed layer, with micro-nutrients. Low productivity within summer/autumn upwelling seasons follows the suppression of this enrichment during downwelling/mixing events, and the overall productivity of the upwelling season will depend on the number, duration and intensity of these downwelling/mixing events. Low productivity during winter/spring is driven by the absence of upwelling, low irradiances and short daylengths. / Thesis (Ph.D.) - University of Adelaide, School of Earth and Environmental Sciences, 2009

Made available in DSpace on 2016-06-02T19:28:57Z (GMT). No. of bitstreams: 1 TeseMVR.pdf: 1800586 bytes, checksum: c44cb463d61ffeb5394f543684f66e59 (MD5) Previous issue date: 2003-06-24 / Concern with the effect of oil spills in coastal regions resulting from the production, refining and transport of this product has been one of the priorities of the institutions working with this sector. Consequently, there is a large demand for research on the impacts of by accidents on the environment and, particularly, on natural communities. In the present study, a mesocosm experiment was used to evaluate the effects of a mixture of light Arabian and Russian oil with the chemical dispersant Corexit® 9500, over a coastal plankton community. The experiment was carried out in Rio de Janeiro and lasted 25 consecutive days. Three replicates were used as control, with only seawater, three were treated with 800 mL of petroleum and the other three were treated with the mixture 800 mL of petroleum and 80 mL of dispersant. The chemical alterations in the water were striking, especially the rise in the concentration of organic compounds. The results demonstrated a severe reduction of phytoplankton density, as a result of the addition of oil. There was also a change in the composition of the organism groups, with alteration of dominance of diatoms to phytoflagelates. Similar effect was found for the zooplankton. Both the oil and its mixture with dispersant resulted in a reduction of population densities and changes, or disappearance, of some components. Meroplanktonic organisms had a higher sensitivity to the acute effects of the oil and oil-dispersant mixture than holoplanktonic organisms. Copepods were resistant to the effects of oil and oil-dispersant mixture. Among the herbivores, Acartia lilljeborgi had greater resistance to the acute toxic effect of oil, whereas Pseudodiaptomus acutus was more resistant to the chronic effects of both oil and the mixture. Among carnivores, Oithona hebes appeared as a resistant species to both acute and chronical effects. Mesocosms were shown to be useful for investigating the effects of oil spills on marine environments since standardized laboratory tests with algae and invertebrate test-organisms corroborated the field findings. / A avaliação dos efeitos de derrames de petróleo nas regiões costeiras decorrentes das atividades de produção, refinamento ou transporte deste produto tem sido uma das prioridades das instituições ligadas a este setor e há uma demanda muito grande de pesquisas sobre os impactos ocasionados por estes sobre o ambiente e as comunidades naturais, em particular. No presente estudo a experimentação em mesocosmos foi utilizada para avaliar os efeitos do derrame do petróleo ARLE/URAL e deste tratado com o dispersante químico Corexit® 9500, sobre uma comunidade planctônica costeira. O experimento foi realizado no Rio de Janeiro, Brasil e teve a duração de 25 dias consecutivos (19/06 a 13/07/2002). Os tratamentos foram feitos em triplicata com um volume aproximado de 1,7m3 de água do mar em cada unidade. Foram utilizadas três réplicas como controle, contendo apenas água do mar, três réplicas foram tratadas com 800 mL de petróleo e três outras réplicas foram tratadas com a mistura de 800 mL de petróleo e 80 mL de dispersante. As alterações químicas na água foram marcantes, principalmente em relação ao aumento na concentração dos compostos orgânicos. Os resultados evidenciaram uma redução severa na densidade do fitoplâncton, em decorrência da adição do óleo ou da mistura de óleo e dispersante. Houve também uma mudança na composição dos grupos, com alteração da dominância de diatomáceas para fitoflagelados. Em relação aos grupos zooplanctônicos também foi observado um efeito mais acentuado no tratamento com petróleo e dispersante. Os organismos meroplanctônicos foram mais sensíveis ao petróleo do que os holoplanctônicos. Os copépodes foram dominantes, em todos os tratamentos. A espécie herbívora Acartia lilljeborgi foi mais resistente ao efeito agudo do petróleo, enquanto Pseudodiaptomus acutus foi mais resistente ao efeito crônico Entre os Copepoda carnívoros Oithona hebes foi a espécie mais resistente, tanto ao impacto agudo quanto ao impacto crônico. Os mesocosmos são adequados para a avaliação dos efeitos do derrame de petróleo ou da mistura de petróleo e dispersante, como corroborado pelos estudos de toxicidade com algas e organismos-teste invertebrados, que corroboraram os efeitos observados em campo. A utilização de dispersante químico na etapa de remediação após os derrames necessita ser reavaliada tendo em vista os resultados deste trabalho que indicam que a mistura petróleodispersante é ainda mais tóxica do que o petróleo sozinho.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Biology; and the Woods Hole Oceanographic Institution), February 2013. / "February 2013." Cataloged from PDF version of thesis. / Includes bibliographical references. / Intact polar diacylglycerolipids (IP-DAGs) were used to study microbial dynamics in the surface ocean. IP-DAGs from surface ocean seawater were quantified using high performance liquid chromatography-mass spectrometry (HPLC-MS), after first developing a sensitive, high throughput molecular ion independent triple quadrupole MS method for quantification. Using this analytical technique I examined the distribution of the nine most abundant classes of IPDAGs across the Mediterranean, and found that phospholipids as a percent of total IP-DAGs correlated with phosphate concentration. Furthermore, phospholipids were a higher percent of total particulate phosphorus where phosphate was higher, ranging from 1-14%. Thus IP-DAGs can play not only a significant but also a dynamic role in defining planktonic nutrient needs and cellular C:N:P ratios in the environment. Additionally, microcosm incubations were amended with phosphate and ammonium, and in the course of several days this elicited a shift in the ratios of IP-DAGs. This study was the first to demonstrate the dynamic response of membrane lipid composition to changes in nutrients in a natural, mixed planktonic community, and indicated that the change in IP-DAG ratios in response to changing nutrients may be a useful indicator of microbial nutrient stress. In the surface waters of the western North Atlantic I used three experimental approaches to identify the microbial sources of the nine most abundant classes of IP-DAGs. Phytoplankton are the primary source of one class of sulfolipid, sulfoquinovosyldiacylglycerol, and one class of betaine lipid, diacylglyceryl-trimethyl-homoserine, while heterotrophic bacteria are the dominant source of the phospholipids phosphatidylglycerol and phosphatidylethanolamine. In regrowth experiments in the Sargasso Sea and the North Pacific I demonstrated that phospholipid specific production rate is representative of heterotrophic bacterial cell specific growth rate. I measured phospholipid specific production rate and bacterial production rate using uptake of 3H-leucine (³H-Leu) and 3H-thymidine (³H-TdR) across the North Atlantic, across the Mediterranean, and in the North Pacific subtropical gyre. I found that phospholipid specific production rates estimate heterotrophic bacterial cell specific growth rates that are on the order of 1 per day, an order of magnitude faster than cell specific growth rates suggested by uptake of ³H-Leu and ³H-TdR. / by Kimberly J. Popendorf. / Ph.D.

<p align="justify">The Southern Ocean (ca. 20% of the world ocean surface) is a key place for the regulation of Earth climate thanks to its capacity to absorb atmospheric carbon dioxide (CO2) by physico-chemical and biological mechanisms. The biological carbon pump is a major pathway of absorption of CO2 through which the CO2 incorporated into autotrophic microorganisms in surface waters is transferred to deep waters. This process is influenced by the extent of the primary production and by the intensity of the remineralization of organic matter along the water column. So, the annual cycle of sea ice, through its in situ production and remineralization processes but also, through the release of microorganisms, organic and inorganic nutrients (in particular iron)into the ocean has an impact on the carbon cycle of the Southern Ocean, notably by promoting the initiation of phytoplanktonic blooms at time of ice melting.</p><p><p align="justify">The present work focussed on the distribution of organic matter (OM) and its interactions with the microbial network (algae, bacteria and protozoa) in sea ice and ocean, with a special attention to the factors which regulate the biological carbon pump of the Southern Ocean. This thesis gathers data collected from a) late winter to summer in the Western Pacific sector, Western Weddell Sea and Bellingshausen Sea during three sea ice cruises ARISE, ISPOL-drifting station and SIMBA-drifting station and b) summer in the Sub-Antarctic and Polar Front Zone during the oceanographic cruise SAZ-Sense.</p><p><p align="justify">The sea ice covers were typical of first-year pack ice with thickness ranging between 0.3 and 1.2 m, and composed of granular and columnar ice. Sea ice temperature ranging between -8.9°C and -0.4°C, brines volume ranging between 2.9 to 28.2% and brines salinity from 10 to >100 were observed. These extreme physicochemical factors experienced by the microorganisms trapped into the semi-solid sea ice matrix therefore constitute an extreme change as compared to the open ocean. Sea ice algae were mainly composed of diatoms but autotrophic flagellates (such as dinoflagellates or Phaeocystis sp.) were also typically found in surface ice layers. Maximal algal biomass was usually observed in the bottom ice layers except during SIMBA where the maxima was localised in the top ice layers likely because of the snow and ice thickness which limit the light available in the ice cover. During early spring, the algal growth was controlled by the space availability (i.e. brine volume) while in spring/summer (ISPOL, SIMBA) the major nutrients availability inside sea ice may have controlled algal growth. At all seasons, high concentrations of dissolved and particulate organic matter were measured in sea ice as compared to the water column. Dissolved monomers (saccharides and amino acids) were accumulated in sea ice, in particular in winter. During spring and summer, polysaccharides constitute the main fraction of the dissolved saccharides pool. High concentrations of transparent exopolymeric particles (TEP), mainly constituted with saccharides, were present and their gel properties greatly influence the internal habitat of sea ice, by retaining the nutrients and by preventing the protozoa grazing pressure, inducing therefore an algal accumulation. The composition as well as the vertical distribution of OM in sea ice was linked to sea ice algae.</p><p><p align="justify">Besides, the distribution of microorganisms and organic compounds in the sea ice was also greatly influenced by the thermodynamics of the sea ice cover, as evidenced during a melting period for ISPOL and during a floodfreeze cycle for SIMBA. The bacteria distribution in the sea ice was not correlated with those of algae and organic matter. Indeed, the utilization of the accumulated organic matter by bacteria seemed to be limited by an external factor such as temperature, salinity or toxins rather than by the nature of the organic substrates, which are partly composed of labile monomeric saccharides. Thus the disconnection of the microbial loop leading to the OM accumulation was highlighted in sea ice.</p><p><p align="justify">In addition the biofilm formed by TEP was also involved in the retention of cells and other compounds(DOM, POM, and inorganic nutrients such as phosphate and iron) to the brine channels walls and thus in the timing of release of ice constituents when ice melts. The sequence of release in marginal ice zone, as studied in a microcosm experiments realized in controlled and trace-metal clean conditions, was likely favourable to the development of blooms in the marginal ice zone. Moreover microorganisms derived from sea ice (mainly <10 µm) seems able to thrive and grow in the water column as also the supply of organic nutrients and Fe seems to benefit to the pelagic microbial community.</p><p><p align="justify">Finally, the influence of the remineralization of organic matter by heterotrophic bacterioplankton on carbon export and biological carbon pump efficiency was investigated in the epipelagic (0-100 m) and mesopelagic(100-700 m) zones during the summer in the sub-Antarctic and Polar Front zones (SAZ and PFZ) of the Australian sector (Southern Ocean). Opposite to sea ice, bacterial biomass and activities followed Chl a and organic matter distributions. Bacterial abundance, biomass and activities drastically decreased below depths of 100-200 m. Nevertheless, depth-integrated rates through the thickness of the different water masses showed that the mesopelagic contribution of bacteria represents a non-negligible fraction, in particular in a diatom-dominated system./</p><p><br><p><p align="justify">L’océan Antarctique (± 20% de la surface totale des océans) est un endroit essentiel pour la régulation du climat de notre planète grâce à sa capacité d’absorber le dioxyde de carbone (CO2) atmosphérique par des mécanismes physico-chimique et biologique. La pompe biologique à carbone est un processus majeur de fixation de CO2 par les organismes autotrophes à la surface de l’océan et de transfert de carbone organique vers le fond de l’océan. Ce processus est influencé par l’importance de la production primaire ainsi que par l’intensité de la reminéralisation de la matière organique dans la colonne d’eau. Ainsi, le cycle annuel de la glace via sa production/reminéralisation in situ mais aussi via l’ensemencement de l’océan avec des microorganismes et des nutriments organiques et inorganiques (en particulier le fer) a un impact sur le cycle du carbone dans l’Océan Antarctique, notamment en favorisant l’initiation d’efflorescences phytoplanctoniques dans la zone marginale de glace.</p><p><p align="justify">Plus précisément, nous avons étudié les interactions entre le réseau microbien (algues, bactéries et protozoaires) et la matière organique dans le but d’évaluer leurs impacts potentiels sur la pompe biologique de carbone dans l’Océan Austral. Deux écosystèmes différents ont été étudiés :la glace de mer et le milieu océanique grâce à des échantillons prélevés lors des campagnes de glace ARISE, ISPOL et SIMBA et lors de la campagne océanographique SAZ-Sense, couvrant une période allant de la fin de l’hiver à l’été.</p><p><p align="justify">La glace de mer est un environnement très particulier dans lequel les microorganismes planctoniques se trouvent piégés lors de la formation de la banquise et dans lesquels ils subissent des conditions extrêmes de température et de salinité, notamment. Les banquises en océan ouvert étudiées (0,3 à 1,2 m d’épaisseur, températures de -8.9°C à -0.4°C, volumes relatifs de saumure de 2.9 à 28.2% et salinités de saumures entre 10 et jusque >100) étaient composées de glace columnaire et granulaire. Les algues de glace étaient principalement des diatomées mais des flagellés autotrophes (tels que des dinoflagellés ou Phaeocystis sp.) ont été typiquement observés dans les couches de glace de surface. Les biomasses algales maximales se trouvaient généralement dans la couche de glace de fond sauf à SIMBA où les maxima se trouvaient en surface, probablement en raison de l’épaisseur des couches de neige et de glace, limitant la lumière disponible dans la colonne de glace. Au début du printemps, la croissance algale était contrôlée par l’espace disponible (càd le volume des saumures) tandis qu’au printemps/été, la disponibilité en nutriments majeurs a pu la contrôler. A toutes les saisons, des concentrations élevées en matière organique (MO) dissoute et particulaire on été mesurées dans la glace de mer par rapport à l’océan. Des monomères dissous (sucres et acides aminés) étaient accumulés dans la glace, surtout en hiver. Au printemps et été, les polysaccharides dissous dominaient le réservoir de sucres. La MO était présente sous forme de TEP qui par leurs propriétés de gel modifie l’habitat interne de la glace. Ce biofilm retient les nutriments et gêne le mouvement des microorganismes. La composition et la distribution de la MO dans la glace étaient en partie reliées aux algues de glace. De plus, la thermodynamique de la couverture de glace peut contrôler la distribution des microorganismes et de la MO, comme observé lors de la fonte de la glace à ISPOL et lors du refroidissement de la banquise à SIMBA. La distribution des bactéries n’est pas corrélée avec celle des algues et de la MO dans la glace. En effet, la consommation de la MO par les bactéries semble être limitée non pas par la nature chimique des substrats mais par un facteur extérieur affectant le métabolisme bactérien tel que la température, la salinité ou une toxine. Le dysfonctionnement de la boucle microbienne menant à l’accumulation de la MO dans la glace a donc été mis en évidence dans nos échantillons.</p><p><p align="justify">De plus, le biofilm formé par les TEP est aussi impliquée dans l’attachement des cellules et autres composés aux parois des canaux de saumure et donc dans la séquence de largage lors de la fonte. Cette séquence semble propice au développement d’efflorescences phytoplanctoniques dans la zone marginale de glace. Les microorganismes originaires de la glace (surtout ceux de taille < 10 μm) semblent capables de croître dans la colonne d’eau et l’apport en nutriments organiques et inorganiques apparaît favorable à la croissance des microorganismes pélagiques.</p><p><p align="justify">Enfin, l’influence des activités hétérotrophes sur l’export de carbone et l’efficacité de la pompe biologique à carbone a été évaluée dans la couche de surface (0-100 m) et mésopélagique (100-700 m) de l’océan. Au contraire de la glace, les biomasses et activités bactériennes suivaient les distributions de la chlorophyll a et de la MO. Elles diminuent fortement en dessous de 100-200 m, néanmoins les valeurs intégrées sur la hauteur de la colonne d’eau indiquent que la reminéralisation de la MO par les bactéries dans la zone mésopélagique est loin d’être négligeable, spécialement dans une région dominée par les diatomées.</p> / Doctorat en Sciences agronomiques et ingénierie biologique / info:eu-repo/semantics/nonPublished